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Target CDS Information

Gene Symbol (Gene ID) Cyb561 (ENSMUSG00000019590)
Cross Reference
GO GO:0000293, GO:0016021, GO:0022865, ...show all
goslim_goa GO:0003674, GO:0005575, GO:0006091, ...show all
MGI_trans_name Cyb561-007
OTTP OTTMUSP00000065570
OTTT OTTMUST00000117238
UCSC uc007lxr.1
UniParc UPI0003B929C3
Uniprot/SPTREMBL V9GXF4
Vega_transcript Cyb561-007, OTTMUST00000117238
Vega_translation 212073, OTTMUSP00000065570
Definition codon_start:2
protein_id:ENSMUSP00000139125
translation:
XALPYYVAFSQLLGLTVVAVTGAWLGLYRGGIAWESSLQFNVHPLCMVIGMIFLQGDALL
VYRVFRREAKRTTKILHGLLHVFAFIIALVGPSTARLNLRGCWPTC

Chromosome 11
Length
Position(start - end)
2279
105935518 - 105937798
Orient to Chromosome minus
Link Location : (11:105935518-105937798)
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Detail Map


 

Report

Polymorphisms Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Cyb561 (ENSMUSG00000019590)
Transcript ID ENSMUST00000183493
Reports
substitution
cSNPs0
Insertion5
Deletion8
SNPs
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
Insertions
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
Deletions
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
coding sequence substitutions
premature termination by the nucleotide substitution0
synonymous num0
non-synonymous num0
synonymous substitutions
non-synonymous substitutions
B6 transcript
(ENSMUST00000183493)
ALPYYVAFSQLLGLTVVAVTGAWLGLYRGGIAWESSLQFNVHPLCMVIGMIFLQGDALLV
YRVFRREAKRTTKILHGLLHVFAFIIALVGPSTARLNLRGCWPTC*
MSMv4 transcript
ALPYYVAFSQLLGLTVVAVTGAWLGLYRGGIAWESSLQFNVHPLCMVIGMIFLQGDALLV
YRVFRREAKRTTKILHGLLHVFAFIIALVGPSTARLNLRGCWPTC*
homology100.00 (106 / 106)

Exon Detail Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Cyb561 (ENSMUSG00000019590)
Transcript ID ENSMUST00000183493
No. Exon / Intron Start End Start Phase End Phase Length Sequence
5' upstream sequence
..........TGGTGGCATTGGTGGTAGCTTTTGTGTTGAGTCCCAGCCATTGCCAGCAC
TGAGGCAAAGGGAACAGAGGCCAGAGCCAGCCTGTTCCCCTTCCACCCTCTTTACTTATG
GGAACACTGGGGCAATAGGAGAACATGCAGAAGAAGGGCTGAGGGCTGGCCTGAGGTTGG
ATGTCAAGGGTCTCCCGATGCAGGCGGTGCCTCCTTAAATAGCTGCGTGCCTGCTGTGTC
TTCCTGCACAGATCGCCAGCAGTTGAGTAAGGTAGATGGGGACACATGGGTTCAGAATGT
GAGGCCACAGTGCTGGGACCTTCGGTTCTGGAAACCTCACCTGAGGGAGGAGAGCACTCC
CTCCCACACTTGGTTTGGGAAGGAACTGGAAAGGATAGGTGGGGGGCGGGGGTGATGGGG
GCTAGTGGGCTAGCCTGTGGTCTGGTACAGTGGGGGCAGAAAAGAGCTATGTAGAACAAG
GGGACCCTCTCTGGTGCGCCCATGCTGACTCGGGGTGAAAGAGCAAAGCTTCTACTTCTC
ACCCGGGAAGGACTTTCCCATTGACCTGGACAAAGAAGGGGATTTGCTTGCATTTTCAAC
ACATCTGTCAGCCCTACCCCAGAAAATGCAGGACCTCTGAAAATAGGAACTGTAACCCCG
GGATGGAGGCCATGCTGTCATTAGAACTCAGGATGTTTTCAAACTTGTGCCTTCCCTTAT
ACATAGAACCCAGGTCAAGTTTGTCTGTGTGGGAAGGCCTGGCCTCCTGCTGATGTGTTC
CTGGGATGTTGGGACTCTGCCCAAGGATGTGGGCATGGGTCTTAATGGTGGGAGAGTGAA
CAGAGGCGTGCACGGCTTAGGCCCTGGGGTGGAAGAGGTGGCAGTCCCGGGGGCAGGTCA
TGGGTGGTTCCTTTTAGCTAGCTCTCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC
TCTTGCAGCTGGGGTCTCAGAATGGAGCACAGTTCTGCGTCTGTCCCTGC
1 EXON 1 105937629 105937798 - 1 170
TGCACTGCCGTACTATGTGGCCTTCTCCCAGCTGCTGGGCCTCACTGTAGTGGCTGTGAC
TGGTGCGTGGCTGGGTCTGTACCGAGGTGGCATTGCCTGGGAAAGCTCCCTGCAGTTTAA
TGTGCACCCGCTCTGCATGGTCATAGGCATGATCTTCCTTCAAGGAGATG
INTRON 1 - 2 105936654 105937628 975
GTGAGTCCCGTGGGGCCAGCTCCCT..........ACATCTTTCTCTCACTTTCCATAAG
2 EXON 2 105936555 105936653 1 1 99
CTCTGCTGGTGTACCGTGTCTTCAGAAGAGAAGCCAAACGCACGACCAAGATCTTGCATG
GGCTGCTGCACGTCTTCGCCTTCATCATCGCCCTGGTGG
INTRON 2 - 3 105935568 105936554 987
GTGAGTTCCTGAACACAGTGTTTCC..........CTTTTCCCTTCACCCTACCCTACAG
3 EXON 3 105934951 105935567 1 - 617
GTCCAAGTACAGCACGTTTGAACCTGAGGGGGTGCTGGCCAACGTGCTAGGCTTGCTGCT
GGTCTGTTTTGGGGTGGTTGTGCTCTACATCTTGGCTCAGGCTGACTGGAAGCGGCCTTC
CCAGGCTGAAGAGCAAGCCCTCTCCATGGACTTCAAGACACTCACGGAGGGAGACAGCCC
CAGTCCCCAGTGATCGCCCTCCTTGTCCTCTTGGCTCTGTGGGTTTCCAGATATCTTTTT
GCTCTTCCCTGCAGACACTGAGTCTCTTAGGTCCAGGAGTGTGAGTGTGGGGCTGTGTTG
TTAGTTTAGTGGGGTTCCAGGCTTTGGAGTTGTTCTCAGTCTCCCTTCCTCCCCTTCCTC
TCTGCAGCTTTTGATGAATCCTGTGAGCCCTGAGTAGGCTCTGTCTGCCTGTACCCGCTG
TTGTCCGTTCACGTGCAGAAAGCTTGGTTAGGGGATCTGGGGTCAAGCCTGGCCCTGATC
CCTATTGGAGCTAGACAATAGCTCCGCCCTCCATGCAGCAGATGGCTGCTGGGCCTGGGC
CTGAGGGACTGGCATGGAGAAGTCAGACCGCTGCTTTGTGTATTCAACCCAGAAGTTCCA
GCAGCTTGGGAAGCATG
3' upstream sequence
TGTCCTTGGCAGTAGAGCAAGTGATATTATGTGTAAAATATGCTGGTGTTCAGAGGAAGG
CTCCCCAGAAAGGTTGACTCTGGCTCCCGAAGGAGCCTTGGCGTGTGGGTTGGCCACAGT
CTTTAGGCCTTTCTGTTCTTTTAAAATCCCTGATCATTAAATAGGCTTTTCGTGGGGAAG
GGGATTAGTGATCAAAACTCAGGTAAATACCTGCCCTGGTGGAGGAGGGCAGGCTGCTTG
CTCACAGTGAGGGCTGCCCTGGCAGAGTGCCTCCCTTCAGCAGGGGCTAAGCCCTAGCTT
CCTTCTGCGGGCCAGCCTGGGCAGACTCTGAGAGTGGGAGGCCACACCTCTGGAGTTTTT
GGAAGAGGGCTGCTGTTTGCCTTGTTCTCCAGGGGGGCTGCTGGGGTACTCTGGCTTGGG
GTGCCCTGTCTTGGTTGAAGCAGCCCTGAGGGATCATGGTCCTCCCAGCCCTGGGTCCAT
TATCGCTGGACAGTAGGACTGAAGTGGAAGAGAGGAACGGGATTGGTCTCCTGCACTTAG
CTTCAACCCCCTACTGCCTGTTGCGTTGTTAGCTGAGTCACTGTTTGGCTTGAGTCTAGA
GATATTGGGATTAGAGCACTGATCTTGTATTCTCTGGCTTGGCACATGCTCTCTTCTTGT
TTTCCTTCTCTCGGGTTTTGAGCCTCACAGTTTGTGACACACATGGTTAACTTAGTGAGG
AAATGAATGGTTTCTGAACCTGGCAGTTCTTTAAGTCACTAGGCTGGCTTTCTCTGTCAG
ATTTCTAATAACTGCGTGGGCCCTGCTTCTGGTGAGGTCTCTTCCCCCAGCTGTGGTGTA
GCTCTCTCCCTGATGCTCCCTCACCTTCCCTCCCGTCTCTCCACTTGCTAGGATGGTGAG
GTTTGCCTCCAGTTTCAACTGTATATGCTGTAGGGCTAGGGAATCTTAGGAGTTCTGTCG
TCGGTTGGCACACTTGTACAGTCAAGTGTTTACATCTGGG..........

Sequence Detail Report

Gene Symbol (Gene ID) Cyb561 (ENSMUSG00000019590)
Transcript ID ENSMUST00000183493
SNP Information
Strain :
Sequence Retrieve :
Exon translate :
CDS Start ( 1 ) - End ( 106 )
-
Strand : forward reverse
Show sequence : nucleotide amino acid
Color information