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Target CDS Information

Gene Symbol (Gene ID) Insig2 (ENSMUSG00000003721)
Cross Reference
CCDS CCDS15236.1
EMBL AF527631, AK040703, AK050394, ...show all
Fantom 4921537P11, A530017D05, C730043J18, ...show all
GO GO:0006641, GO:0006695, GO:0006991, ...show all
goslim_goa GO:0005575, GO:0005622, GO:0005623, ...show all
MGI_trans_name Insig2-004
OTTP OTTMUSP00000048266
OTTT OTTMUST00000088554
protein_id AAH15288.1, AAH23067.1, AAH23874.1, ...show all
Reactome R-MMU-1430728, R-MMU-1655829, R-MMU-556833
RefSeq_mRNA NM_001271531.1
RefSeq_peptide NP_001258460
RefSeq_peptide_predicted XP_006529952.1, XP_006529953.1, XP_006529954.1, ...show all
UCSC uc007cjo.1
UniParc UPI0000020D82
Uniprot/SWISSPROT Q91WG1
Vega_transcript Insig2-004, OTTMUST00000088554
Vega_translation 180524, OTTMUSP00000048266
Definition protein_id:ENSMUSP00000124345
translation:
MAEGETESPRPKKCGPYISSVTSQSVNVVIRGVVLFFIGVFLALVLNLLQIQRNVTLFPP
DVITSIFSSAWWVPPCCGTASAVIGLLYPCIDRHLGEPHKFKREWSSVMRCVAVFVGINH
ASAKVDFDNNFQFSLTLAALSVGLWWTFDRSRSGFGLGVGIAFLATVVTQLLVYNGVYQY
TSPDFLYVRSWLPCIFFAGGITMGNIGRQLAMYECKVIAEKSHQE

Chromosome 1
Length
Position(start - end)
13933
121305906 - 121319840
Orient to Chromosome minus
Link Location : (1:121305906-121319840)
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Detail Map


 

Report

Polymorphisms Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Insig2 (ENSMUSG00000003721)
Transcript ID ENSMUST00000159085
Reports
substitution
cSNPs0
Insertion13
Deletion24
SNPs
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
Insertions
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
Deletions
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
coding sequence substitutions
premature termination by the nucleotide substitution0
synonymous num0
non-synonymous num0
synonymous substitutions
non-synonymous substitutions
B6 transcript
(ENSMUST00000159085)
MAEGETESPRPKKCGPYISSVTSQSVNVVIRGVVLFFIGVFLALVLNLLQIQRNVTLFPP
DVITSIFSSAWWVPPCCGTASAVIGLLYPCIDRHLGEPHKFKREWSSVMRCVAVFVGINH
ASAKVDFDNNFQFSLTLAALSVGLWWTFDRSRSGFGLGVGIAFLATVVTQLLVYNGVYQY
TSPDFLYVRSWLPCIFFAGGITMGNIGRQLAMYECKVIAEKSHQE*
MSMv4 transcript
MAEGETESPRPKKCGPYISSVTSQSVNVVIRGVVLFFIGVFLALVLNLLQIQRNVTLFPP
DVITSIFSSAWWVPPCCGTASAVIGLLYPCIDRHLGEPHKFKREWSSVMRCVAVFVGINH
ASAKVDFDNNFQFSLTLAALSVGLWWTFDRSRSGFGLGVGIAFLATVVTQLLVYNGVYQY
TSPDFLYVRSWLPCIFFAGGITMGNIGRQLAMYECKVIAEKSHQE*
homology100.00 (226 / 226)

Exon Detail Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Insig2 (ENSMUSG00000003721)
Transcript ID ENSMUST00000159085
No. Exon / Intron Start End Start Phase End Phase Length Sequence
5' upstream sequence
..........AAAAAAAAAAAAGAGTCCTTAAGGACTTCATACAATGCATTTTTATATTT
ACTCCCCACTTCCCTGACACATCTCCCGGATTCGCACTCCACTTCCCCACTCGAACTTCA
AGTCCTTAAAATCTTCAAGGAATAAAGAAAACAAAACTTCTCTGTACCATTTTCCATCCA
AAACAACAGCTCATCTGCACCATCTCCAACGTGCACACTATCCATTCTCTTAATTATGGT
TTCCAGTTCTAAAAGGAAGGTCTTAGCTGGGCGTGGTGGCGCACACTTCTGATCCTAGCA
CTGAGGAAGCAGAGACAAGTAGCTCTCGAGGTCTGCCTGGTCTACCTGGGTAGCTTCAGA
CCGGCTAAGGCTACATACACAGTGTGACCCTGTCTCAAGAAGGAAGCGCTTTAAGTCAAA
TTTTGACAGTAACAGAGGTGATAAGGTTTTGTGTTGCTTGGTCTTTGACCCAAGTCTCTC
GAGAGCTGATGCAAAGAGCTGCCTTTAATCCGTATTCAGAAAGGATACTGAGGCACACTC
CAAGGCGGGAAGAAGTTGCAGGCGACAACCGTGGAGCCTGTCACCCGGCTGGCAACTGCG
GCCCACGCAGAGGGTGGAGTCTCGGGCTGCGCGTGCGTGCGCGCACGAGTCCCTTACTCC
GCCCACAGAGTCCAGACGCCCATCCAGAACCTCTGACTCCGGAGGGCACCAACAACAGCT
GATTTCGCAGCCTCTCCTCCTCCCAGACAGGGTCCCCACCTCCTTCCAGCCCGGAGTGCC
CTGCACACCGGAAGTCCTTTTGCCCCGTCTCCGCAGAGCGGAGGCAGTGCGCGCAGAGGC
AACCGGAAGCTCCTCTGCCCCTACCGTCAGCGTGAAGCGGCCGGGCGGCGCAGGCGCAGA
GCGGCTCAGGCGGAGCTGTGGGAGGGGAGTAGGTCGGGGGCCGGTCCCTGAAGATGGCGG
AGGCGGGGGTGAACTGGGGGTCTCCGGGCAGAGCTCAGGTGAGCTTATTT
1 EXON 1 121327521 121327678 - - 158
GGCCGGGGACGGCTCGAGGACGGCGGTGGCTTTTGGGAAGAGGAGCTGTTTATGTTTTAA
CGTCGCAGGCTGGCAACACTCCTAGCTGGTGTTGGGGGATCCAGGACCCGCAGGTGGGGC
CTGCTGGGGCGAGGGGTCCCCGGCTTACCTGGAGAGAG
INTRON 1 - 2 121319906 121327520 7615
GTCAGCGAGATCTAGGGAAAAACCA..........AACATTGGTCTGCTTCACTTCACAG
2 EXON 2 121319597 121319905 - 1 309
TTCACCTTTTCCACTGGGAAGCCACATTTTGTTTTACGGCTTAGGCCTACTGAACTTATG
AAACCATGGCGGAAGGAGAGACGGAGTCACCTCGGCCTAAAAAGTGTGGCCCATACATTT
CCTCTGTCACCAGCCAGAGTGTGAACGTGGTGATCCGCGGGGTGGTACTCTTCTTCATTG
GAGTGTTCCTGGCATTAGTGTTGAACTTGCTTCAGATTCAGAGAAACGTGACACTTTTTC
CACCAGATGTGATCACGAGCATCTTTTCATCTGCCTGGTGGGTACCACCATGCTGCGGCA
CAGCCTCAG
INTRON 2 - 3 121312326 121319596 7271
GTATGTGCAAGGCAGTTCTGTGTCG..........CTTACTTTTTTTATTCTTTCCACAG
3 EXON 3 121312201 121312325 1 0 125
CTGTGATTGGGCTGTTGTACCCCTGCATTGACAGGCATCTAGGAGAACCTCATAAATTTA
AAAGAGAGTGGTCCAGTGTCATGCGCTGCGTGGCGGTGTTCGTGGGTATAAATCACGCCA
GTGCT
INTRON 3 - 4 121307307 121312200 4894
GTATCCTTTCTGAAACATGCAGTAA..........GATGGCTCCTTAGCACTGGTCTCAG
4 EXON 4 121307140 121307306 0 2 167
AAAGTAGACTTCGACAACAACTTCCAGTTTTCCCTCACACTGGCTGCACTGTCAGTAGGA
CTGTGGTGGACTTTTGACAGATCTAGAAGTGGTTTTGGCCTTGGTGTTGGAATTGCTTTC
TTAGCAACCGTTGTCACCCAACTGTTAGTCTACAATGGTGTTTATCA
INTRON 4 - 5 121306964 121307139 176
GTAAGTATTGTCCTTGTCACCTGTT..........TATTAAAATATTTCTATTATTCTAG
5 EXON 5 121306864 121306963 2 0 100
ATACACATCTCCAGATTTTCTCTATGTCCGTTCTTGGTTGCCATGTATATTTTTTGCTGG
AGGCATAACGATGGGAAACATTGGCCGTCAACTGGCAATG
INTRON 5 - 6 121305948 121306863 916
GTAAGCTGAGGCCATGCAGTGTGTG..........CTTTTTGACCTTTTAATCTTTGCAG
6 EXON 6 121305555 121305947 0 - 393
TATGAATGCAAAGTTATTGCTGAAAAATCTCATCAAGAATGAAGAGGGCAGACGTCTTAT
CTGTTCTTTGGGAGCCTTGGGAAAGCACCGTGGGTATGAGAGGTTCACCAACGGAGGACC
CAGTTTTCCCTTGATTGTGTATGTGTGTGGTGTGTGTGTGTGTGTGACACACATGTTTTT
GCAGTCTGTGATTGCTTCTGTAAATCAGTTACCAACCTTTCGGTATTTGATTTCAATAAA
TGTAAGATATCTGTGCGCTACATGAAAGATATGTTTATGAGTACATGAAATTTCTAAGTT
TTTTGAACACAGCATACATTGTATCACAATGTCAATGTGCCAAACGTGTTACTGACACAG
AGAATAAGAATGCTTTGAACAATTTAGAAATGT
3' upstream sequence
AATGAAAGAGAAAAAGAAAGCTAAAAACAAAGCAAATAGAAAGCAAATTATAGCTGGCCG
TTCCCTCTCACCGGCTGGTGTGCCTTTTCCCGTTTCTAATCAGCTGTGTTCGTCACAGCA
CCCACATGTGTTGTCTCTGTTGCTATCGTTTCAGAGTTTGAGTCTTATATGGTACTCATG
AACTTCCATAGAATGGTTTTAAGTCTGCATTGTTGTAGGGACCCAAAGAATACTTTCCCG
ATTTCTTCAGAAGGCTGTGTGATGGGCAGAGGTGGTTATCAACATCACCCCACTTTGAGT
CTACATTTGGAAAAAACAAATGACTAAAATCAGGGGCTTTGTTTAGATGAATGTGCTTGG
GAATACTGTGTAGCCCCCTCTCTGCCACAGAGGCCAAAGTGATGCTAATTGTCACTGGCT
ACTGAAGCTCACAGCTCCAGTGCATGGATGACAGGAACACAGGCAGATCAAGGTGACAGG
TCATACAGAACCTATTGGACTCTAGAAAGCAGGCCATGTGACTGAGCAGCTATAGAGGGC
CTGAGTGTGTGGCCTTCATCAGTGCAGTCGGAAGATGCTGGAACCTGACTCCCTGTGTGC
CAATGTCTATTACAAGGTCTGTCCTTGGAGAGCGTATGGAGAGCACACTTCACACATCCC
GTTAACAACGCCTGCCATGTATTTATGGGTTAAGTCTATCAGCTGACTCTCCGCTCGCTT
TGCATTTCTGAAATTGTTAATTGTCTGGCACACAAGGGTAAATTCTTCTGACTACTGTGG
TGTGCGTGTGCTTCTGTTTTGAGTGTGAGAGAAAATGTATTCATGTGTCTGTGTGTGCAT
GTGCCCATGCTTTCCTATAGTGTCAGGTAGACATTTTAATTTCTTTTAAAGCAGTGCTGT
CAGACTGAAATCTTGTACACTGGAGTGTAATGTGCTTTGTGTTCTCAGGCGCAGAGTGTG
AACATCCCAAGAGTACTCCATACTGAATATGTATACACAA..........

Sequence Detail Report

Gene Symbol (Gene ID) Insig2 (ENSMUSG00000003721)
Transcript ID ENSMUST00000159085
SNP Information
Strain :
Sequence Retrieve :
Exon translate :
CDS Start ( 1 ) - End ( 226 )
-
Strand : forward reverse
Show sequence : nucleotide amino acid
Color information