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Target CDS Information

Gene Symbol (Gene ID) Insig2 (ENSMUSG00000003721)
Cross Reference
EMBL AC163333
GO GO:0006641, GO:0006695, GO:0006991, ...show all
goslim_goa GO:0005575, GO:0005622, GO:0005623, ...show all
MGI_trans_name Insig2-008
OTTP OTTMUSP00000048270
OTTT OTTMUST00000088558
UniParc UPI0001DD35A4
Uniprot/SPTREMBL E0CXS5
Vega_transcript Insig2-008, OTTMUST00000088558
Vega_translation 180527, OTTMUSP00000048270
Definition protein_id:ENSMUSP00000125046
translation:
MAEGETESPRPKKCGPYISSVTSQSVNVVIRGVVLFFIGVFLALVLNLLQIQRNVTLFPP
DVITSIFSSAWWVPPCCGTASDTHLQIFSM

Chromosome 1
Length
Position(start - end)
12902
121306937 - 121319840
Orient to Chromosome minus
Link Location : (1:121306937-121319840)
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Detail Map


 

Report

Polymorphisms Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Insig2 (ENSMUSG00000003721)
Transcript ID ENSMUST00000162582
Reports
substitution
cSNPs0
Insertion12
Deletion23
SNPs
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
Insertions
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
Deletions
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
coding sequence substitutions
premature termination by the nucleotide substitution0
synonymous num0
non-synonymous num0
synonymous substitutions
non-synonymous substitutions
B6 transcript
(ENSMUST00000162582)
MAEGETESPRPKKCGPYISSVTSQSVNVVIRGVVLFFIGVFLALVLNLLQIQRNVTLFPP
DVITSIFSSAWWVPPCCGTASDTHLQIFSM
MSMv4 transcript
MAEGETESPRPKKCGPYISSVTSQSVNVVIRGVVLFFIGVFLALVLNLLQIQRNVTLFPP
DVITSIFSSAWWVPPCCGTASDTHLQIFSM
homology100.00 (90 / 90)

Exon Detail Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Insig2 (ENSMUSG00000003721)
Transcript ID ENSMUST00000162582
No. Exon / Intron Start End Start Phase End Phase Length Sequence
5' upstream sequence
..........CCTTTAAAAACACTCTGTAGAGGAATGTAGTGGTGGGCAGGAAAAATGAT
CAAAACGTATTGTATATGTATGAAATTTTTCTTTAAAAAAAAAAAAAAAGAGTCCTTAAG
GACTTCATACAATGCATTTTTATATTTACTCCCCACTTCCCTGACACATCTCCCGGATTC
GCACTCCACTTCCCCACTCGAACTTCAAGTCCTTAAAATCTTCAAGGAATAAAGAAAACA
AAACTTCTCTGTACCATTTTCCATCCAAAACAACAGCTCATCTGCACCATCTCCAACGTG
CACACTATCCATTCTCTTAATTATGGTTTCCAGTTCTAAAAGGAAGGTCTTAGCTGGGCG
TGGTGGCGCACACTTCTGATCCTAGCACTGAGGAAGCAGAGACAAGTAGCTCTCGAGGTC
TGCCTGGTCTACCTGGGTAGCTTCAGACCGGCTAAGGCTACATACACAGTGTGACCCTGT
CTCAAGAAGGAAGCGCTTTAAGTCAAATTTTGACAGTAACAGAGGTGATAAGGTTTTGTG
TTGCTTGGTCTTTGACCCAAGTCTCTCGAGAGCTGATGCAAAGAGCTGCCTTTAATCCGT
ATTCAGAAAGGATACTGAGGCACACTCCAAGGCGGGAAGAAGTTGCAGGCGACAACCGTG
GAGCCTGTCACCCGGCTGGCAACTGCGGCCCACGCAGAGGGTGGAGTCTCGGGCTGCGCG
TGCGTGCGCGCACGAGTCCCTTACTCCGCCCACAGAGTCCAGACGCCCATCCAGAACCTC
TGACTCCGGAGGGCACCAACAACAGCTGATTTCGCAGCCTCTCCTCCTCCCAGACAGGGT
CCCCACCTCCTTCCAGCCCGGAGTGCCCTGCACACCGGAAGTCCTTTTGCCCCGTCTCCG
CAGAGCGGAGGCAGTGCGCGCAGAGGCAACCGGAAGCTCCTCTGCCCCTACCGTCAGCGT
GAAGCGGCCGGGCGGCGCAGGCGCAGAGCGGCTCAGGCGGAGCTGTGGGA
1 EXON 1 121327691 121327765 - - 75
GGGGAGTAGGTCGGGGGCCGGTCCCTGAAGATGGCGGAGGCGGGGGTGAACTGGGGGTCT
CCGGGCAGAGCTCAG
INTRON 1 - 2 121319973 121327690 7718
GTGAGCTTATTTGGCCGGGGACGGC..........TGATTCTTATTTTTATCTCTTGTAG
2 EXON 2 121319597 121319972 - 1 376
GATTTCTGGTAGGTCCCACGTTCAGACAAGATGTACCATTGAAACATTGGTCTGCTTCAC
TTCACAGTTCACCTTTTCCACTGGGAAGCCACATTTTGTTTTACGGCTTAGGCCTACTGA
ACTTATGAAACCATGGCGGAAGGAGAGACGGAGTCACCTCGGCCTAAAAAGTGTGGCCCA
TACATTTCCTCTGTCACCAGCCAGAGTGTGAACGTGGTGATCCGCGGGGTGGTACTCTTC
TTCATTGGAGTGTTCCTGGCATTAGTGTTGAACTTGCTTCAGATTCAGAGAAACGTGACA
CTTTTTCCACCAGATGTGATCACGAGCATCTTTTCATCTGCCTGGTGGGTACCACCATGC
TGCGGCACAGCCTCAG
INTRON 2 - 3 121306964 121319596 12633
GTATGTGCAAGGCAGTTCTGTGTCG..........TATTAAAATATTTCTATTATTCTAG
3 EXON 3 121306937 121306963 1 - 27
ATACACATCTCCAGATTTTCTCTATGT
3' upstream sequence
CCGTTCTTGGTTGCCATGTATATTTTTTGCTGGAGGCATAACGATGGGAAACATTGGCCG
TCAACTGGCAATGGTAAGCTGAGGCCATGCAGTGTGTGAGTTGCATGACAAAGTGGCCAT
TACTCAAGGGAAAGCATTGACAAAAGTAGTGTTCTTTGACCTGTCTTTTGCACTTTAATT
GAAATAAGTCATTAGGATGAATTTAATCTGAGGAATATTAATACTTGAGAAACAACTGGA
GAGAAAAGGAAAAATAGGTTATGGGTAGGATGGTAGAATTTGTTGACCATATTTGATACT
TGACTTTTGTTGTTTTAATTAGCTTGCACTTTCCCGTTCTACAAACAAAGAACTTTTTTT
TTTCCTTGAGACTAAGTCTCAAGTAGCCCATCTGGCCTTGAACTCACTACGTAGCCTAGG
ATGCCCTTGAGTTTTTGGTCTTCCTGCTTCTTCCTCAAGTGCTGAGATTGTAGGCCTTGC
ACCACTACACCGGGTTATGTGGGACTGGGGATTGAAGCCTGGTTTTCTTCATACCCTCAA
CCCCTAGGAAAAGAACAATGTTTACAATGAAAAGGGCATAATATACATCATACATTTTAC
TAGCTATTCTTTTAGAATATTGTTTTAATTATTATCCTTCATATTGTTACATACAGTGAT
TTGAAATAATGATTAAAATTCAGGTTTGTCCTAAGGTCATGGCTTACCCTTGGCTGATCT
TGGAGCACAAAAGAAACACACTGTGCTTATTATATATGTTATATTATATTATACCAGCTA
TTGTTGCTTGCAGTGTGGAAATGGTTCTCTTTTTTGCTGTCTTCCATTGTTGTCTTCACT
TTCAGAATGCCATTATATAACTCTTGGTTCTTTGAGGAATAAAGTGAACACATACTGAAA
CATTCATTTTTAGAGCTTTTTAATTTGTTTGAAAGTTGCAATTCACAAGAGATTAATATG
TTAACTTTTTGACCTTTTAATCTTTGCAGTATGAATGCAA..........

Sequence Detail Report

Gene Symbol (Gene ID) Insig2 (ENSMUSG00000003721)
Transcript ID ENSMUST00000162582
SNP Information
Strain :
Sequence Retrieve :
Exon translate :
CDS Start ( 1 ) - End ( 90 )
-
Strand : forward reverse
Show sequence : nucleotide amino acid
Color information