MoG+ -Mouse Genome database with high added value-

Target CDS Information

Gene Symbol (Gene ID)

C6 (ENSMUSG00000022181)

Cross Reference

EMBL	AC102033, AC117588, AK041057
Fantom	A530072O03
GO	GO:0001701, GO:0005579, GO:0006955, ...show all
goslim_goa	GO:0002376, GO:0005575, GO:0005576, ...show all
MGI_trans_name	C6-002
OTTP	OTTMUSP00000043174
OTTT	OTTMUST00000080941
protein_id	BAC30803.1
Reactome	R-MMU-166658, R-MMU-166665, R-MMU-168249, ...show all
UCSC	uc011zqw.1

UniParc	UPI00000EAD71
Uniprot/SPTREMBL	Q8BRY4
Vega_transcript	C6-002, OTTMUST00000080941
Vega_translation	216673, OTTMUSP00000043174

Definition

protein_id:ENSMUSP00000125358
translation:

MTRHLTLCFILLVMLIDKSEACFCDHYPWTHWSSCSKSCNSGTQSRQRQVVVNDYYWKNL
CDKLCIKQETRECNLQTCPINCVLGDYGTWSDCDPCTEKQVKVKSVLRPSQFGGQPCTEP
LVTFQPCVPSKLCKIEETNCKNKFLCDSGRCIPSKLECNGENDCGDNSDERNCGRTKPVC
TRIYTPIPSVQLMGTGFHFLAGEPRGEVLDNSFTGGICKLVKTSRASNPYRVSANLENVN
FEVQTIEDDLKTEFYKNLISF

Chromosome

Length
Position(start - end)

28197
4731660 - 4759858

Orient to Chromosome

plus

Link

Location : (15:4731660-4759858)
/

Detail Map

name	C6 (ENSMUSG00000022181)
type	gene
link	VEGA Ensembl MGI
xref
definition	locus_tag : C6 note : complement component 6 [Source:MGI Symbol;Acc:MGI:88233]

name	C6 (ENSMUSG00000022181)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000162585

name	C6 (ENSMUSG00000022181)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000161997

name	C6 (ENSMUSG00000022181)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000022788

name	C6 (ENSMUSG00000022181)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000162350

name	C6 (ENSMUSG00000022181) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	CCDS:CCDS37025.1 RefSeq_peptide:NP_057913 RefSeq_mRNA:NM_016704.2 RefSeq_mRNA_predicted:XM_011245322.1 RefSeq_peptide_predicted:XP_006520020.1 RefSeq_peptide_predicted:XP_006520021.1 RefSeq_peptide_predicted:XP_011243624.1 Vega_transcript:C6-001 Vega_transcript:OTTMUST00000080935 Uniprot/SPTREMBL:Q91X70 UCSC:uc007vco.2 EMBL:AC102033 EMBL:AC117588 EMBL:BC011251 EMBL:CH466581 GO:GO:0001701 GO:GO:0001970 GO:GO:0005579 GO:GO:0006955 GO:GO:0045766 GO:GO:0045917 GO:GO:0070062 GO:GO:0070062 MGI_trans_name:C6-001 Vega_translation:216672 Vega_translation:OTTMUSP00000043171 goslim_goa:GO:0002376 goslim_goa:GO:0005575 goslim_goa:GO:0005576 goslim_goa:GO:0005623 goslim_goa:GO:0005886 goslim_goa:GO:0008150 goslim_goa:GO:0009790 goslim_goa:GO:0043226 goslim_goa:GO:0043234 goslim_goa:GO:0048856 protein_id:AAH11251.1 protein_id:EDL03393.1 OTTP:OTTMUSP00000043171 OTTT:OTTMUST00000080935 Reactome:R-MMU-166658 Reactome:R-MMU-166665 Reactome:R-MMU-168249 Reactome:R-MMU-168256 Reactome:R-MMU-977606 UniParc:UPI000002943A
definition	note : transcript_id=ENSMUST00000162585 protein_id : ENSMUSP00000124417 translation : MTRHLTLCFILLVMLIDKSEACFCDHYPWTHWSSCSKSCNSGTQSRQRQVVVNDYYWKNLCDKLCIKQETRECNLQTCPINCVLGDYGTWSDCDPCTEKQVKVKSVLRPSQFGGQPCTEPLVTFQPCVPSKLCKIEETNCKNKFLCDSGRCIPSKLECNGENDCGDNSDERNCGRTKPVCTRIYTPIPSVQLMGTGFHFLAGEPRGEVLDNSFTGGICKLVKTSRASNPYRVSANLENVNFEVQTIEDDLKTEFYKNLISFEKNKNEDSLSVDERTKFFPIPIFHFSEKNEHSHYSSAFNKVIKASHKKDSSFIRIHKLIKVLNFTMKATDLQLSDVFLKALVHLPLEYNSAVYSRIFDDFGTHYFTSGSLGGKYDLIYQFSRQELQNSGLTEEEAQNCVQYETKKLKFLYMEIHKEDTCTKNKLSEKYGGSFLQGSEKSISLVQGGRSQQAAALAWEKGTSGPEENVYSEWLESVKENPAVVDYKLAPITDLVRNIPCAVTKRNNLRRALQEYAAKFDPCQCAPCPNNGRPRLSGTECLCVCQSGTYGENCERRSPGYKSDAVDGNWGCWSSWSACNAAYRRSRTRECNNPAPQRGGQSCGGKDQQEEDCTVSIMENVGQPCINDDEEMKEVDLAEPEAESGCSQPPLPENAFTWNEKKLYSVGEEVEISCLTGFTAVGFQYLRCLPDRTWSQGDVECQRTSCLKPVVQDVLTISPFQRVYQIGESIELTCPRGFVVAGPSRYTCKEDSWTPPISNSLTCEQGVRDHP

name	C6 (ENSMUSG00000022181) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	Vega_transcript:C6-002 Vega_transcript:OTTMUST00000080941 Uniprot/SPTREMBL:Q8BRY4 UCSC:uc011zqw.1 Fantom:A530072O03 EMBL:AC102033 EMBL:AC117588 EMBL:AK041057 GO:GO:0001701 GO:GO:0005579 GO:GO:0006955 GO:GO:0070062 MGI_trans_name:C6-002 Vega_translation:216673 Vega_translation:OTTMUSP00000043174 goslim_goa:GO:0002376 goslim_goa:GO:0005575 goslim_goa:GO:0005576 goslim_goa:GO:0005623 goslim_goa:GO:0005886 goslim_goa:GO:0008150 goslim_goa:GO:0009790 goslim_goa:GO:0043226 goslim_goa:GO:0043234 goslim_goa:GO:0048856 protein_id:BAC30803.1 OTTP:OTTMUSP00000043174 OTTT:OTTMUST00000080941 Reactome:R-MMU-166658 Reactome:R-MMU-166665 Reactome:R-MMU-168249 Reactome:R-MMU-168256 Reactome:R-MMU-977606 UniParc:UPI00000EAD71
definition	note : transcript_id=ENSMUST00000161997 protein_id : ENSMUSP00000125358 translation : MTRHLTLCFILLVMLIDKSEACFCDHYPWTHWSSCSKSCNSGTQSRQRQVVVNDYYWKNLCDKLCIKQETRECNLQTCPINCVLGDYGTWSDCDPCTEKQVKVKSVLRPSQFGGQPCTEPLVTFQPCVPSKLCKIEETNCKNKFLCDSGRCIPSKLECNGENDCGDNSDERNCGRTKPVCTRIYTPIPSVQLMGTGFHFLAGEPRGEVLDNSFTGGICKLVKTSRASNPYRVSANLENVNFEVQTIEDDLKTEFYKNLISF

name	C6 (ENSMUSG00000022181) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	CCDS:CCDS37025.1 RefSeq_peptide_predicted:XP_006520020.1 RefSeq_peptide_predicted:XP_006520021.1 Uniprot/SPTREMBL:Q91X70 UCSC:uc007vco.2 EMBL:AC102033 EMBL:AC117588 EMBL:BC011251 EMBL:CH466581 GO:GO:0001701 GO:GO:0001970 GO:GO:0005579 GO:GO:0006955 GO:GO:0045766 GO:GO:0045917 GO:GO:0070062 MGI_trans_name:C6-201 goslim_goa:GO:0002376 goslim_goa:GO:0005575 goslim_goa:GO:0005576 goslim_goa:GO:0005623 goslim_goa:GO:0005886 goslim_goa:GO:0008150 goslim_goa:GO:0009790 goslim_goa:GO:0043226 goslim_goa:GO:0043234 goslim_goa:GO:0048856 protein_id:AAH11251.1 protein_id:EDL03393.1 Reactome:R-MMU-166658 Reactome:R-MMU-166665 Reactome:R-MMU-168249 Reactome:R-MMU-168256 Reactome:R-MMU-977606 UniParc:UPI000002943A
definition	note : transcript_id=ENSMUST00000022788 protein_id : ENSMUSP00000022788 translation : MTRHLTLCFILLVMLIDKSEACFCDHYPWTHWSSCSKSCNSGTQSRQRQVVVNDYYWKNLCDKLCIKQETRECNLQTCPINCVLGDYGTWSDCDPCTEKQVKVKSVLRPSQFGGQPCTEPLVTFQPCVPSKLCKIEETNCKNKFLCDSGRCIPSKLECNGENDCGDNSDERNCGRTKPVCTRIYTPIPSVQLMGTGFHFLAGEPRGEVLDNSFTGGICKLVKTSRASNPYRVSANLENVNFEVQTIEDDLKTEFYKNLISFEKNKNEDSLSVDERTKFFPIPIFHFSEKNEHSHYSSAFNKVIKASHKKDSSFIRIHKLIKVLNFTMKATDLQLSDVFLKALVHLPLEYNSAVYSRIFDDFGTHYFTSGSLGGKYDLIYQFSRQELQNSGLTEEEAQNCVQYETKKLKFLYMEIHKEDTCTKNKLSEKYGGSFLQGSEKSISLVQGGRSQQAAALAWEKGTSGPEENVYSEWLESVKENPAVVDYKLAPITDLVRNIPCAVTKRNNLRRALQEYAAKFDPCQCAPCPNNGRPRLSGTECLCVCQSGTYGENCERRSPGYKSDAVDGNWGCWSSWSACNAAYRRSRTRECNNPAPQRGGQSCGGKDQQEEDCTVSIMENVGQPCINDDEEMKEVDLAEPEAESGCSQPPLPENAFTWNEKKLYSVGEEVEISCLTGFTAVGFQYLRCLPDRTWSQGDVECQRTSCLKPVVQDVLTISPFQRVYQIGESIELTCPRGFVVAGPSRYTCKEDSWTPPISNSLTCEQGVRDHP

name	C6 (ENSMUSG00000022181) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	Vega_transcript:C6-004 Vega_transcript:OTTMUST00000083365 Uniprot/SPTREMBL:E9Q6D8 UCSC:uc007vco.2 EMBL:AC102033 EMBL:AC117588 GO:GO:0001701 GO:GO:0005579 GO:GO:0006955 GO:GO:0070062 MGI_trans_name:C6-004 Vega_translation:216674 Vega_translation:OTTMUSP00000044780 goslim_goa:GO:0002376 goslim_goa:GO:0005575 goslim_goa:GO:0005576 goslim_goa:GO:0005623 goslim_goa:GO:0005886 goslim_goa:GO:0008150 goslim_goa:GO:0009790 goslim_goa:GO:0043226 goslim_goa:GO:0043234 goslim_goa:GO:0048856 OTTP:OTTMUSP00000044780 OTTT:OTTMUST00000083365 Reactome:R-MMU-166658 Reactome:R-MMU-166665 Reactome:R-MMU-168249 Reactome:R-MMU-168256 Reactome:R-MMU-977606 UniParc:UPI0001889C64
definition	note : transcript_id=ENSMUST00000162350 protein_id : ENSMUSP00000125693 translation : MTRHLTLCFILLVMLIDKSEACFCDHYPWTHWSSCSKSCNSGTQSRQRQVVVNDYYWKNLCDKLCIKQETRECNLQTCPINCVLGDYGTWSDCDPCTEKQVKVKSVLRPSQFGGQPCTEPLVTFQPCVPSKLCKIEETNCKNKFLCDSGRCIPSKLECNGENDCGDNSDERNCGRTKPVCTRIYTPIPSVQLMGTGFHFLAGEPRGEVLDNSFTGGICKLVKTSRASNPYRVSANLENVNFEVQTIEDDLKTEFYKNLISFEKNKNEDSLSVDERTKFFPIPIFHFSEKNEHSHYSSAFNKVIKASHKKDSSFIRIHKLIKVLNFTMKATDLQLSDVFLKALVHLPLEYNSAVYSRIFDDFGTHYFTSGSLGGKYDLIYQFSRQELQNSGLTEEEAQNCVQYETKKLKFLYMEIHKEDTCTKNKLSEKYGGSFLQGSEKSISLVQGGRSQQAAALAWEKGTSGPEENVYSEWLESVKENPAVVDYKLAPITDLVRNIPCAVTKRNNLRRALQEYAAKFDPCQCAPCPNNGRPRLSGTECLCVCQSGTYGENCERRSPGYKSDAVDGNWGCWSSWSACNAAYRRSRTRECNNPAPQRGGQSCGGKDQQEEDCTVSIMENVGQPCINDDEEMKEVDLAEPEAESGCSQPPLPENAFTWNEKKLYSVGEEVEISCLTGFTAVGFQYLRCLPDRTWSQGDVECQRTSCLKPVVQDVLTISPFQRVYQIGESIELTCPRGFVVAGPSRYTCKEDSWTPPISNSLTCEQGEQIFAWTCHLHVLSALRPNTCFPSSDSAYSEDLCIFDGGSSQYFTSSACKFLAGKCLNNTQSHFVHSGSCQEGLQLEWGLERLKLAVNSTKRVSCGYNTCYDWENCSAHTSNCVCLLPPQCSKDENQLYCVKIGSSMREKTVNICTLGAVRCANIKVEILNPGRCPD

name
type	misc_feature
link
xref
definition	note : contig AC102033.9 35728..202269(1)

name
type	misc_feature
link
xref
definition	note : contig AC117588.11 1..164907(-1)

Polymorphisms Report

Target Strain	MSMv4 JF1v3 KJRv1 SWNv1 CHDv1 NJLv1 BLG2v1 HMIv1 BFMv1 PGN2v1

Gene Symbol (Gene ID)	C6 (ENSMUSG00000022181)
Transcript ID	ENSMUST00000161997

Reports
substitution
cSNPs	1
Insertion	12
Deletion	15
SNPs	-1kb 4722227(c.-9433A>G), 4722340(c.-9320T>G), 4722518(c.-9142A>G), 4722550(c.-9110G>A), 4723885(c.-7775T>C), 4724233(c.-7427G>A), 4724356(c.-7304A>G), 4724590(c.-7070G>C), 4724650(c.-7010T>C), 4724705(c.-6955T>C), 4724988(c.-6672G>A), 4725002(c.-6658C>A), 4725785(c.-5875T>G), 4725787(c.-5873C>A), 4725792(c.-5868T>G), 4725793(c.-5867C>A), 4726707(c.-4953T>C), 5'UTR CDS 4733716(c.197T>A), 3'UTR 4727235(c.-118C>T), 4727260(c.-93C>T), INTRON 4727391(c.-36+74G>A), 4727450(c.-36+133T>C), 4727483(c.-36+166T>G), 4728552(c.-36+1235C>G), 4728626(c.-36+1309A>T), 4728784(c.-36+1467G>A), 4729104(c.-36+1787G>A), 4729208(c.-36+1891A>G), 4729387(c.-36+2070T>C), 4729579(c.-35-2046A>G), 4729603(c.-35-2022T>C), 4729621(c.-35-2004T>C), 4729874(c.-35-1751T>C), 4729911(c.-35-1714C>T), 4730269(c.-35-1356A>G), 4730272(c.-35-1353T>C), 4730422(c.-35-1203A>G), 4730928(c.-35-697G>A), 4731006(c.-35-619C>T), 4731514(c.-35-111G>A), 4731612(c.-35-13G>A), 4731621(c.-35-4T>A), 4732381(c.143+579A>T), 4732493(c.143+691A>C), 4732652(c.143+850A>G), 4733031(c.144-632C>G), 4733176(c.144-487G>A), 4733334(c.144-329C>G), 4733379(c.144-284A>G), 4733836(c.300+17C>A), 4733963(c.300+144C>G), 4733994(c.300+175G>A), 4734015(c.300+196G>A), 4734571(c.301-553A>G), 4734599(c.301-525A>G), 4734753(c.301-371C>A), 4735806(c.445+538A>G), 4736025(c.445+757A>G), 4736191(c.445+923A>G), 4736809(c.445+1541C>A), 4736961(c.445+1693A>G), 4737259(c.445+1991G>A), 4737326(c.445+2058T>C), 4737595(c.446-2164C>G), 4737725(c.446-2034C>A), 4738312(c.446-1447T>A), 4739056(c.446-703T>C), 4739069(c.446-690C>A), 4739269(c.446-490A>G), 4739327(c.446-432C>T), 4740557(c.587+657T>C), 4741148(c.587+1248G>C), 4741434(c.587+1534T>C), 4741658(c.587+1758T>G), 4741665(c.587+1765T>A), 4741726(c.587+1826T>C), 4741762(c.587+1862G>A), 4747079(c.587+7179G>T), 4747103(c.587+7203G>A), 4747167(c.587+7267C>T), 4747254(c.587+7354G>T), 4748262(c.588-6979G>A), 4748735(c.588-6506T>C), 4749166(c.588-6075C>T), 4749210(c.588-6031A>G), 4749444(c.588-5797C>A), 4750417(c.588-4824C>T), 4750533(c.588-4708T>G), 4751622(c.588-3619G>A), 4752189(c.588-3052A>G), 4752482(c.588-2759A>G), 4752586(c.588-2655G>A), 4752800(c.588-2441A>G), 4752939(c.588-2302G>A), 4752953(c.588-2288G>T), 4753127(c.588-2114C>T), 4753162(c.588-2079C>T), 4753473(c.588-1768A>G), 4753648(c.588-1593C>A), 4754102(c.588-1139T>C), 4754216(c.588-1025A>G), 4754471(c.588-770A>T), 4754594(c.588-647C>T), 4754858(c.588-383C>T), 4754900(c.588-341G>A), 4754952(c.588-289T>C), 4755070(c.588-171C>T), 4755095(c.588-146C>G), 4755463(c.726+84A>G), 4756310(c.726+931A>G), 4756598(c.726+1219C>G), 4756725(c.726+1346T>A), 4757038(c.726+1659G>C), 4757515(c.726+2136G>A), 4757564(c.726+2185T>G), 4757642(c.727-2159A>G), 4757916(c.727-1885A>G), 4758045(c.727-1756A>T), 4758124(c.727-1677A>G), 4758333(c.727-1468A>G), 4758567(c.727-1234A>G), 4758784(c.727-1017T>G), 4758899(c.727-902C>A), 4759180(c.727-621G>A), 4759279(c.727-522T>G), 4759497(c.727-304T>C), 4759511(c.727-290T>C), 4759557(c.727-244C>G), +1kb 4760238(c.380G>T), 4760385(c.527G>A), 4760770(c.912A>G), 4761824(c.1966G>A), 4761881(c.2023G>A), 4762017(c.2159C>T), 4762082(c.2224G>A), 4762213(c.2355G>A), 4762271(c.2413T>C), 4762370(c.2512G>T), 4762930(c.3072T>G), 4763013(c.3155C>A), 4763238(c.3380A>C), 4763312(c.3454C>T), 4764531(c.4673T>C), 4764533(c.4675T>C), 4764754(c.4896A>G), 4764774(c.4916T>C),
Insertions	-1kb 4726430 (c.-5230_-5229insGTGGAC), 4726443 (c.-5217_-5216insC), 4726451 (c.-5209_-5208insC), 4726612 (c.-5048_-5047insA), 5'UTR CDS 3'UTR INTRON 4733513 (c.144-149_144-148insGTAAGGT), 4741576 (c.587+1679dupA), 4749846 (c.588-5388dupT), 4750776 (c.588-4465dupT), 4755555 (c.726+187dupT), +1kb 4760716 (c.858_859insAC), 4760728 (c.870_871insCAA), 4763674 (c.3816_3817insACTTA),
Deletions	-1kb 4724487 (c.-7172delA), 4726086 (c.-5573_-5572delGG), 5'UTR CDS 3'UTR INTRON 4730040 (c.-35-1578delT), 4737623 (c.446-2129delA), 4748913 (c.588-6320delA), 4752025 (c.588-3213_588-3210delTTTG), 4754553 (c.588-676_588-672delAAAAA), 4758029 (c.727-1758_727-1756delAAA), 4758251 (c.727-1543delT), +1kb 4760634 (c.777delT), 4762726 (c.2869_2872delAAAA), 4763657 (c.3800_3802delTTT), 4763676 (c.3819_3821delTTT), 4764706 (c.4849_4850delCA), 4764754 (c.4897_*4898delTT),
coding sequence substitutions
premature termination by the nucleotide substitution	0
synonymous num	0
non-synonymous num	1
synonymous substitutions
non-synonymous substitutions	4733716 (p.Ile66Asn),
B6 transcript (ENSMUST00000161997)	MTRHLTLCFILLVMLIDKSEACFCDHYPWTHWSSCSKSCNSGTQSRQRQVVVNDYYWKNL CDKLCIKQETRECNLQTCPINCVLGDYGTWSDCDPCTEKQVKVKSVLRPSQFGGQPCTEP LVTFQPCVPSKLCKIEETNCKNKFLCDSGRCIPSKLECNGENDCGDNSDERNCGRTKPVC TRIYTPIPSVQLMGTGFHFLAGEPRGEVLDNSFTGGICKLVKTSRASNPYRVSANLENVN FEVQTIEDDLKTEFYKNLISF
MSMv4 transcript	MTRHLTLCFILLVMLIDKSEACFCDHYPWTHWSSCSKSCNSGTQSRQRQVVVNDYYWKNL CDKLCNKQETRECNLQTCPINCVLGDYGTWSDCDPCTEKQVKVKSVLRPSQFGGQPCTEP LVTFQPCVPSKLCKIEETNCKNKFLCDSGRCIPSKLECNGENDCGDNSDERNCGRTKPVC TRIYTPIPSVQLMGTGFHFLAGEPRGEVLDNSFTGGICKLVKTSRASNPYRVSANLENVN FEVQTIEDDLKTEFYKNLISF
homology	99.62 (261 / 261)

Exon Detail Report

Target Strain	MSMv4 JF1v3 KJRv1 SWNv1 CHDv1 NJLv1 BLG2v1 HMIv1 BFMv1 PGN2v1

Gene Symbol (Gene ID)	C6 (ENSMUSG00000022181)
Transcript ID	ENSMUST00000161997


..........GGTGGGGACATTAAACACAATCGATTTAAACTCAATTTCTAGTCATTTTT
AAAGTAACACAAAAAAGGAGAAGACCATGATAGCCCAACACATTCCTATTTCTTCTGTGT
GTAAGAGTTTTCATCTATCGTTTCCTAAGCCAAACAGTGCAACTTGTCACTCCTCTTAGT
CTACTCCCATACTGACTAACAAAGTACATTTACTGCATTTGAGACTGATTAGCATTTTCC
TAATGAGAACCTGCAGTATTTGTCTGCAAGAATGGTCAGGTGGCGTGTGGATACAGGACA
TGTGGAAGACCTAGTAGACAGACTCAGGTTTTCCACAGTTGGTTGCCTTTGACTTGGGAT
TTTCTTGGCAGAATCACTTGGTTTTGAATCTATTGTCACTAGGAGAGAAAAAAAATGGTT
CCTAACTGAATACAAACGCTCCTGAAAAAAAGAATAACGGTTTCATTTTAATTCTTAATT
TCCTTTGCTTCCATTCTGTTCCGTTACACTCACAAGTTTTCTCACTAATCAATTGCCAGC
AATTTTACATATTATAAAAATATAGGGCATTTTATGTGATCTTGGTTCTCAGGCCCCTGT
CAATACCTTGGAAGCCCCATGATTGCCAAAACCCCGAAGAAAGTTAATTTCTTAGTACAT
TGGTTCCTCAGTAGCTAGTGTCCAAATAAATTTATTGTACACTTAGAAGAAGACCTATGC
ACAGGTTTTTATCCTTATCTCTAGAATTACCTCTCACTCCACAGGACAAGTGGAACCACA
CCTACTTTCTAAAGACTTCTCTGCAGCCACAAGAGCTATTGCAACAACTCTCAATGTGGA
AATCACTGCAAATAACTCAAGACCATAGAAACTGCTATACTTAGAATTTCGGGATTTCTG
CTTATCTAAGCTAATTATTTCAAAAGTCGGAGTTTCGACACAATATTTATTCTGTCAACA
GTTTAGGTCACCGTTAGGGTTTTGGGACTGTACTTGTGTTTCCCAGTAGT
ATGAAGGACGCTTTGGATGTTCACACAAACCCCTGCTTAGCGTGTGTGTCTTTGGTTTCTACATCCATTCAGGTTCCTGAGCACAACTAGGTCGATTTGAAG
GTAAGTGATCTAATGATTTCTATTT..........GTAACTCTCATTACTTATCTAACAG
GGCATTCTATTTCAGGGTCTGGAGATTGTGGAAGCATGACCAGACATCTCACCTTGTGTTTCATTTTGCTGGTCATGCTGATTGACAAGAGTGAAGCCTGTTTCTGTGACCACTACCCATGGACTCACTGGTCCAGCTGTTCTAAGTCCTGCAATTCTGGAACCCAGAGCAGACAGAG
GTGGGTGTGAGATATTCAGTATATT..........GAGTAACTTTTTCTCACTGTTACAG
ACAAGTAGTAGTGAACGATTACTATTGGAAAAACTTATGCGATAAGCTTTGTAACAAGCAGGAGACCAGAGAGTGCAACTTGCAGACATGTCCCATCAACTGTGTCCTAGGAGACTATGGGACATGGTCAGACTGTGACCCTTGTACTGAAAAACAG
GTATGTGAGCCACAGAAATGCCCAG..........TCACTCACCCTTACTTCTCTTTCAG
GTTAAAGTTAAATCTGTCCTGCGCCCAAGTCAGTTTGGGGGGCAACCATGCACAGAGCCCCTGGTGACCTTTCAACCATGTGTCCCCTCCAAGCTCTGCAAAATTGAAGAGACTAACTGCAAGAATAAGTTCCTCTGTGACAGTG
GTAATATATTCTGATAAAAAATTCA..........TGCTGTGGTGTGCTTTCTTGACCAG
GGCGCTGTATTCCCAGCAAGTTAGAATGCAATGGAGAGAATGACTGTGGAGACAATTCAGATGAAAGGAACTGTGGGAGGACAAAGCCAGTGTGCACACGGATATACACTCCCATCCCTAGTGTGCAGCTGATGGGCACTGG
GTATGTAACATCTTTTTATAATTTT..........TTCTTCAAAATTGCTTTGTTTCCAG
GTTTCATTTTCTGGCAGGAGAGCCCAGAGGAGAAGTTCTTGACAACTCTTTCACTGGAGGAATATGTAAACTTGTCAAGACCAGTCGAGCCAGTAATCCATACCGTGTTTCAGCCAATCTGGAAAATGTCAACTTTGAG
GTATGACAGTGTGGCGTGGTGGTCA..........ATTTCTTACGCACTTTTTTGGTCAG
GTACAAACTATAGAAGATGACTTGAAAACAGAATTCTACAAGAATTTAATCTCTTTTG
AAAAAAATAAAAATGAAGACAGTCTTTCAGTGGATGAAAGGACAAAATTTTTCCCTATAC
CAATTTTCCATTTCTCAGAGAAAAATGAACATTCCCATTATAGCTCTGCCTTCAACAAAG
TCATTAAAGCTTCCCACAAGAAGGTAAGGAAATAGGTGATGATTCACTCTTTCTTCAAAA
TGAATAACTAACAAAGCAATCAAGCAACAAGAAGCAGAACATTTCTGTATCAGTAGGATT
TCTAAAAGATGCTCAAATAGACTCTTTTCATAATTCTCAATGTAGTATTAAAGATGTGCT
GCATGGAGTTGTTCTTGTCTTATTTTCAGTTTTCTCTCCCAGGTTGTGGTCAATATGGAT
TGTTTTCAATAAATTTTAATGCTTGTTTTTTATTTTCATTTACTGTGTATATCTGTGTGA
ATAAGTATATGCCACGTGAGTGCATACCCACAGACCCAGAAGAAGGTGTGAGATCCCTTC
AAACTGGAATTACAAATAATTGTGAGCTGCTAGATGTGGGTGCAGGAACCAAGCCCAGGT
CCTCTAGAAGAATAATCAAGTAACTTAACTGATGATTGGTCTCTCAAGCCCCAAAGAGAG
CTATCTTTCTAAGCATTTGGAAGCTATACAAAGTAAAAGGTTTCATTATGATGCTGCCAA
TGATGGAGATAGTTTTTAGACTGCTTGTGACGTTAATGTATTTTTTTTAATTTTAAAAAT
CTTTTGAGACTTTTATATATGAGCATTGAAGATTTATATTATTTCTACCTTTTTTTTCTG
TCCTAACTCCTTCTTTGCCCCTCCATTCTCTCTGAAATTTAATACCTTTTCTTCATTATT
TAGTATTGTTATATATATACACACACACACATATTTAACTTACTGAGTCCATTTAGTACA
TTTGCTCACATGCACATGTGTTTAGAGCTGACACCTTGAGATTTTGTAATCTATTGGGTG
ATTCGTTACCTCCTCAGCAGCCATTGATTGCCTGGACATC..........

No.	Exon / Intron	Start	End	Start Phase	End Phase	Length	Sequence
	5' upstream sequence						..........GGTGGGGACATTAAACACAATCGATTTAAACTCAATTTCTAGTCATTTTT AAAGTAACACAAAAAAGGAGAAGACCATGATAGCCCAACACATTCCTATTTCTTCTGTGT GTAAGAGTTTTCATCTATCGTTTCCTAAGCCAAACAGTGCAACTTGTCACTCCTCTTAGT CTACTCCCATACTGACTAACAAAGTACATTTACTGCATTTGAGACTGATTAGCATTTTCC TAATGAGAACCTGCAGTATTTGTCTGCAAGAATGGTCAGGTGGCGTGTGGATACAGGACA TGTGGAAGACCTAGTAGACAGACTCAGGTTTTCCACAGTTGGTTGCCTTTGACTTGGGAT TTTCTTGGCAGAATCACTTGGTTTTGAATCTATTGTCACTAGGAGAGAAAAAAAATGGTT CCTAACTGAATACAAACGCTCCTGAAAAAAAGAATAACGGTTTCATTTTAATTCTTAATT TCCTTTGCTTCCATTCTGTTCCGTTACACTCACAAGTTTTCTCACTAATCAATTGCCAGC AATTTTACATATTATAAAAATATAGGGCATTTTATGTGATCTTGGTTCTCAGGCCCCTGT CAATACCTTGGAAGCCCCATGATTGCCAAAACCCCGAAGAAAGTTAATTTCTTAGTACAT TGGTTCCTCAGTAGCTAGTGTCCAAATAAATTTATTGTACACTTAGAAGAAGACCTATGC ACAGGTTTTTATCCTTATCTCTAGAATTACCTCTCACTCCACAGGACAAGTGGAACCACA CCTACTTTCTAAAGACTTCTCTGCAGCCACAAGAGCTATTGCAACAACTCTCAATGTGGA AATCACTGCAAATAACTCAAGACCATAGAAACTGCTATACTTAGAATTTCGGGATTTCTG CTTATCTAAGCTAATTATTTCAAAAGTCGGAGTTTCGACACAATATTTATTCTGTCAACA GTTTAGGTCACCGTTAGGGTTTTGGGACTGTACTTGTGTTTCCCAGTAGT
1	EXON 1	4727216	4727317	-	-	102	ATGAAGGACGCTTTGGATGTTCACACAAACCCCTGCTTAGCGTGTGTGTCTTTGGTTTCT ACATCCATTCAGGTTCCTGAGCACAACTAGGTCGATTTGAAG
	INTRON 1 - 2	4727318	4731624			4307	GTAAGTGATCTAATGATTTCTATTT..........GTAACTCTCATTACTTATCTAACAG
2	EXON 2	4731625	4731802	-	2	178	GGCATTCTATTTCAGGGTCTGGAGATTGTGGAAGCATGACCAGACATCTCACCTTGTGTT TCATTTTGCTGGTCATGCTGATTGACAAGAGTGAAGCCTGTTTCTGTGACCACTACCCAT GGACTCACTGGTCCAGCTGTTCTAAGTCCTGCAATTCTGGAACCCAGAGCAGACAGAG
	INTRON 2 - 3	4731803	4733662			1860	GTGGGTGTGAGATATTCAGTATATT..........GAGTAACTTTTTCTCACTGTTACAG
3	EXON 3	4733663	4733819	2	0	157	ACAAGTAGTAGTGAACGATTACTATTGGAAAAACTTATGCGATAAGCTTTGTAACAAGCA GGAGACCAGAGAGTGCAACTTGCAGACATGTCCCATCAACTGTGTCCTAGGAGACTATGG GACATGGTCAGACTGTGACCCTTGTACTGAAAAACAG
	INTRON 3 - 4	4733820	4735123			1304	GTATGTGAGCCACAGAAATGCCCAG..........TCACTCACCCTTACTTCTCTTTCAG
4	EXON 4	4735124	4735268	0	1	145	GTTAAAGTTAAATCTGTCCTGCGCCCAAGTCAGTTTGGGGGGCAACCATGCACAGAGCCC CTGGTGACCTTTCAACCATGTGTCCCCTCCAAGCTCTGCAAAATTGAAGAGACTAACTGC AAGAATAAGTTCCTCTGTGACAGTG
	INTRON 4 - 5	4735269	4739758			4490	GTAATATATTCTGATAAAAAATTCA..........TGCTGTGGTGTGCTTTCTTGACCAG
5	EXON 5	4739759	4739900	1	2	142	GGCGCTGTATTCCCAGCAAGTTAGAATGCAATGGAGAGAATGACTGTGGAGACAATTCAG ATGAAAGGAACTGTGGGAGGACAAAGCCAGTGTGCACACGGATATACACTCCCATCCCTA GTGTGCAGCTGATGGGCACTGG
	INTRON 5 - 6	4739901	4755240			15340	GTATGTAACATCTTTTTATAATTTT..........TTCTTCAAAATTGCTTTGTTTCCAG
6	EXON 6	4755241	4755379	2	0	139	GTTTCATTTTCTGGCAGGAGAGCCCAGAGGAGAAGTTCTTGACAACTCTTTCACTGGAGG AATATGTAAACTTGTCAAGACCAGTCGAGCCAGTAATCCATACCGTGTTTCAGCCAATCT GGAAAATGTCAACTTTGAG
	INTRON 6 - 7	4755380	4759800			4421	GTATGACAGTGTGGCGTGGTGGTCA..........ATTTCTTACGCACTTTTTTGGTCAG
7	EXON 7	4759801	4759858	0	-	58	GTACAAACTATAGAAGATGACTTGAAAACAGAATTCTACAAGAATTTAATCTCTTTTG
	3' upstream sequence						AAAAAAATAAAAATGAAGACAGTCTTTCAGTGGATGAAAGGACAAAATTTTTCCCTATAC CAATTTTCCATTTCTCAGAGAAAAATGAACATTCCCATTATAGCTCTGCCTTCAACAAAG TCATTAAAGCTTCCCACAAGAAGGTAAGGAAATAGGTGATGATTCACTCTTTCTTCAAAA TGAATAACTAACAAAGCAATCAAGCAACAAGAAGCAGAACATTTCTGTATCAGTAGGATT TCTAAAAGATGCTCAAATAGACTCTTTTCATAATTCTCAATGTAGTATTAAAGATGTGCT GCATGGAGTTGTTCTTGTCTTATTTTCAGTTTTCTCTCCCAGGTTGTGGTCAATATGGAT TGTTTTCAATAAATTTTAATGCTTGTTTTTTATTTTCATTTACTGTGTATATCTGTGTGA ATAAGTATATGCCACGTGAGTGCATACCCACAGACCCAGAAGAAGGTGTGAGATCCCTTC AAACTGGAATTACAAATAATTGTGAGCTGCTAGATGTGGGTGCAGGAACCAAGCCCAGGT CCTCTAGAAGAATAATCAAGTAACTTAACTGATGATTGGTCTCTCAAGCCCCAAAGAGAG CTATCTTTCTAAGCATTTGGAAGCTATACAAAGTAAAAGGTTTCATTATGATGCTGCCAA TGATGGAGATAGTTTTTAGACTGCTTGTGACGTTAATGTATTTTTTTTAATTTTAAAAAT CTTTTGAGACTTTTATATATGAGCATTGAAGATTTATATTATTTCTACCTTTTTTTTCTG TCCTAACTCCTTCTTTGCCCCTCCATTCTCTCTGAAATTTAATACCTTTTCTTCATTATT TAGTATTGTTATATATATACACACACACACATATTTAACTTACTGAGTCCATTTAGTACA TTTGCTCACATGCACATGTGTTTAGAGCTGACACCTTGAGATTTTGTAATCTATTGGGTG ATTCGTTACCTCCTCAGCAGCCATTGATTGCCTGGACATC..........

Sequence Detail Report

Gene Symbol (Gene ID)	C6 (ENSMUSG00000022181)
Transcript ID	ENSMUST00000161997

		SNP Information
Strain :
Sequence Retrieve :
Exon translate : CDS Start ( 1 ) - End ( 261 ) -
Strand :	forward reverse
Show sequence :	nucleotide amino acid
Color information