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Target CDS Information

Gene Symbol (Gene ID) C6 (ENSMUSG00000022181)
Cross Reference
CCDS CCDS37025.1
EMBL AC102033, AC117588, BC011251, ...show all
GO GO:0001701, GO:0001970, GO:0005579, ...show all
goslim_goa GO:0002376, GO:0005575, GO:0005576, ...show all
MGI_trans_name C6-001
OTTP OTTMUSP00000043171
OTTT OTTMUST00000080935
protein_id AAH11251.1, EDL03393.1
Reactome R-MMU-166658, R-MMU-166665, R-MMU-168249, ...show all
RefSeq_mRNA NM_016704.2
RefSeq_mRNA_predicted XM_011245322.1
RefSeq_peptide NP_057913
RefSeq_peptide_predicted XP_006520020.1, XP_006520021.1, XP_011243624.1
UCSC uc007vco.2
UniParc UPI000002943A
Uniprot/SPTREMBL Q91X70
Vega_transcript C6-001, OTTMUST00000080935
Vega_translation 216672, OTTMUSP00000043171
Definition protein_id:ENSMUSP00000124417
translation:
MTRHLTLCFILLVMLIDKSEACFCDHYPWTHWSSCSKSCNSGTQSRQRQVVVNDYYWKNL
CDKLCIKQETRECNLQTCPINCVLGDYGTWSDCDPCTEKQVKVKSVLRPSQFGGQPCTEP
LVTFQPCVPSKLCKIEETNCKNKFLCDSGRCIPSKLECNGENDCGDNSDERNCGRTKPVC
TRIYTPIPSVQLMGTGFHFLAGEPRGEVLDNSFTGGICKLVKTSRASNPYRVSANLENVN
FEVQTIEDDLKTEFYKNLISFEKNKNEDSLSVDERTKFFPIPIFHFSEKNEHSHYSSAFN
KVIKASHKKDSSFIRIHKLIKVLNFTMKATDLQLSDVFLKALVHLPLEYNSAVYSRIFDD
FGTHYFTSGSLGGKYDLIYQFSRQELQNSGLTEEEAQNCVQYETKKLKFLYMEIHKEDTC
TKNKLSEKYGGSFLQGSEKSISLVQGGRSQQAAALAWEKGTSGPEENVYSEWLESVKENP
AVVDYKLAPITDLVRNIPCAVTKRNNLRRALQEYAAKFDPCQCAPCPNNGRPRLSGTECL
CVCQSGTYGENCERRSPGYKSDAVDGNWGCWSSWSACNAAYRRSRTRECNNPAPQRGGQS
CGGKDQQEEDCTVSIMENVGQPCINDDEEMKEVDLAEPEAESGCSQPPLPENAFTWNEKK
LYSVGEEVEISCLTGFTAVGFQYLRCLPDRTWSQGDVECQRTSCLKPVVQDVLTISPFQR
VYQIGESIELTCPRGFVVAGPSRYTCKEDSWTPPISNSLTCEQGVRDHP

Chromosome 15
Length
Position(start - end)
71981
4731660 - 4803642
Orient to Chromosome plus
Link Location : (15:4731660-4803642)
/

Detail Map


 

Report

Polymorphisms Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) C6 (ENSMUSG00000022181)
Transcript ID ENSMUST00000162585
Reports
substitution
cSNPs5
Insertion25
Deletion37
SNPs
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
Insertions
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
Deletions
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
coding sequence substitutions
premature termination by the nucleotide substitution0
synonymous num3
non-synonymous num2
synonymous substitutions 4791119 (p.Thr537Thr), 4793169 (p.Glu632Glu), 4798376 (p.Ser742Ser),
non-synonymous substitutions 4733716 (p.Ile66Asn), 4791181 (p.Gly558Asp),
B6 transcript
(ENSMUST00000162585)
MTRHLTLCFILLVMLIDKSEACFCDHYPWTHWSSCSKSCNSGTQSRQRQVVVNDYYWKNL
CDKLCIKQETRECNLQTCPINCVLGDYGTWSDCDPCTEKQVKVKSVLRPSQFGGQPCTEP
LVTFQPCVPSKLCKIEETNCKNKFLCDSGRCIPSKLECNGENDCGDNSDERNCGRTKPVC
TRIYTPIPSVQLMGTGFHFLAGEPRGEVLDNSFTGGICKLVKTSRASNPYRVSANLENVN
FEVQTIEDDLKTEFYKNLISFEKNKNEDSLSVDERTKFFPIPIFHFSEKNEHSHYSSAFN
KVIKASHKKDSSFIRIHKLIKVLNFTMKATDLQLSDVFLKALVHLPLEYNSAVYSRIFDD
FGTHYFTSGSLGGKYDLIYQFSRQELQNSGLTEEEAQNCVQYETKKLKFLYMEIHKEDTC
TKNKLSEKYGGSFLQGSEKSISLVQGGRSQQAAALAWEKGTSGPEENVYSEWLESVKENP
AVVDYKLAPITDLVRNIPCAVTKRNNLRRALQEYAAKFDPCQCAPCPNNGRPRLSGTECL
CVCQSGTYGENCERRSPGYKSDAVDGNWGCWSSWSACNAAYRRSRTRECNNPAPQRGGQS
CGGKDQQEEDCTVSIMENVGQPCINDDEEMKEVDLAEPEAESGCSQPPLPENAFTWNEKK
LYSVGEEVEISCLTGFTAVGFQYLRCLPDRTWSQGDVECQRTSCLKPVVQDVLTISPFQR
VYQIGESIELTCPRGFVVAGPSRYTCKEDSWTPPISNSLTCEQGVRDHP*
MSMv4 transcript
MTRHLTLCFILLVMLIDKSEACFCDHYPWTHWSSCSKSCNSGTQSRQRQVVVNDYYWKNL
CDKLCNKQETRECNLQTCPINCVLGDYGTWSDCDPCTEKQVKVKSVLRPSQFGGQPCTEP
LVTFQPCVPSKLCKIEETNCKNKFLCDSGRCIPSKLECNGENDCGDNSDERNCGRTKPVC
TRIYTPIPSVQLMGTGFHFLAGEPRGEVLDNSFTGGICKLVKTSRASNPYRVSANLENVN
FEVQTIEDDLKTEFYKNLISFEKNKNEDSLSVDERTKFFPIPIFHFSEKNEHSHYSSAFN
KVIKASHKKDSSFIRIHKLIKVLNFTMKATDLQLSDVFLKALVHLPLEYNSAVYSRIFDD
FGTHYFTSGSLGGKYDLIYQFSRQELQNSGLTEEEAQNCVQYETKKLKFLYMEIHKEDTC
TKNKLSEKYGGSFLQGSEKSISLVQGGRSQQAAALAWEKGTSGPEENVYSEWLESVKENP
AVVDYKLAPITDLVRNIPCAVTKRNNLRRALQEYAAKFDPCQCAPCPNNGRPRLSGTECL
CVCQSGTYGENCERRSPDYKSDAVDGNWGCWSSWSACNAAYRRSRTRECNNPAPQRGGQS
CGGKDQQEEDCTVSIMENVGQPCINDDEEMKEVDLAEPEAESGCSQPPLPENAFTWNEKK
LYSVGEEVEISCLTGFTAVGFQYLRCLPDRTWSQGDVECQRTSCLKPVVQDVLTISPFQR
VYQIGESIELTCPRGFVVAGPSRYTCKEDSWTPPISNSLTCEQGVRDHP*
homology99.74 (770 / 770)

Exon Detail Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) C6 (ENSMUSG00000022181)
Transcript ID ENSMUST00000162585
No. Exon / Intron Start End Start Phase End Phase Length Sequence
5' upstream sequence
..........CTGATAGTGTCAATCACTTAGAGAAGATTGTGTGAGCAGGAGGTGGGGAC
ATTAAACACAATCGATTTAAACTCAATTTCTAGTCATTTTTAAAGTAACACAAAAAAGGA
GAAGACCATGATAGCCCAACACATTCCTATTTCTTCTGTGTGTAAGAGTTTTCATCTATC
GTTTCCTAAGCCAAACAGTGCAACTTGTCACTCCTCTTAGTCTACTCCCATACTGACTAA
CAAAGTACATTTACTGCATTTGAGACTGATTAGCATTTTCCTAATGAGAACCTGCAGTAT
TTGTCTGCAAGAATGGTCAGGTGGCGTGTGGATACAGGACATGTGGAAGACCTAGTAGAC
AGACTCAGGTTTTCCACAGTTGGTTGCCTTTGACTTGGGATTTTCTTGGCAGAATCACTT
GGTTTTGAATCTATTGTCACTAGGAGAGAAAAAAAATGGTTCCTAACTGAATACAAACGC
TCCTGAAAAAAAGAATAACGGTTTCATTTTAATTCTTAATTTCCTTTGCTTCCATTCTGT
TCCGTTACACTCACAAGTTTTCTCACTAATCAATTGCCAGCAATTTTACATATTATAAAA
ATATAGGGCATTTTATGTGATCTTGGTTCTCAGGCCCCTGTCAATACCTTGGAAGCCCCA
TGATTGCCAAAACCCCGAAGAAAGTTAATTTCTTAGTACATTGGTTCCTCAGTAGCTAGT
GTCCAAATAAATTTATTGTACACTTAGAAGAAGACCTATGCACAGGTTTTTATCCTTATC
TCTAGAATTACCTCTCACTCCACAGGACAAGTGGAACCACACCTACTTTCTAAAGACTTC
TCTGCAGCCACAAGAGCTATTGCAACAACTCTCAATGTGGAAATCACTGCAAATAACTCA
AGACCATAGAAACTGCTATACTTAGAATTTCGGGATTTCTGCTTATCTAAGCTAATTATT
TCAAAAGTCGGAGTTTCGACACAATATTTATTCTGTCAACAGTTTAGGTC
1 EXON 1 4727175 4727317 - - 143
ACCGTTAGGGTTTTGGGACTGTACTTGTGTTTCCCAGTAGTATGAAGGACGCTTTGGATG
TTCACACAAACCCCTGCTTAGCGTGTGTGTCTTTGGTTTCTACATCCATTCAGGTTCCTG
AGCACAACTAGGTCGATTTGAAG
INTRON 1 - 2 4727318 4731639 4322
GTAAGTGATCTAATGATTTCTATTT..........TATCTAACAGGGCATTCTATTTCAG
2 EXON 2 4731640 4731802 - 2 163
GGTCTGGAGATTGTGGAAGCATGACCAGACATCTCACCTTGTGTTTCATTTTGCTGGTCA
TGCTGATTGACAAGAGTGAAGCCTGTTTCTGTGACCACTACCCATGGACTCACTGGTCCA
GCTGTTCTAAGTCCTGCAATTCTGGAACCCAGAGCAGACAGAG
INTRON 2 - 3 4731803 4733662 1860
GTGGGTGTGAGATATTCAGTATATT..........GAGTAACTTTTTCTCACTGTTACAG
3 EXON 3 4733663 4733819 2 0 157
ACAAGTAGTAGTGAACGATTACTATTGGAAAAACTTATGCGATAAGCTTTGTAACAAGCA
GGAGACCAGAGAGTGCAACTTGCAGACATGTCCCATCAACTGTGTCCTAGGAGACTATGG
GACATGGTCAGACTGTGACCCTTGTACTGAAAAACAG
INTRON 3 - 4 4733820 4735123 1304
GTATGTGAGCCACAGAAATGCCCAG..........TCACTCACCCTTACTTCTCTTTCAG
4 EXON 4 4735124 4735268 0 1 145
GTTAAAGTTAAATCTGTCCTGCGCCCAAGTCAGTTTGGGGGGCAACCATGCACAGAGCCC
CTGGTGACCTTTCAACCATGTGTCCCCTCCAAGCTCTGCAAAATTGAAGAGACTAACTGC
AAGAATAAGTTCCTCTGTGACAGTG
INTRON 4 - 5 4735269 4739758 4490
GTAATATATTCTGATAAAAAATTCA..........TGCTGTGGTGTGCTTTCTTGACCAG
5 EXON 5 4739759 4739900 1 2 142
GGCGCTGTATTCCCAGCAAGTTAGAATGCAATGGAGAGAATGACTGTGGAGACAATTCAG
ATGAAAGGAACTGTGGGAGGACAAAGCCAGTGTGCACACGGATATACACTCCCATCCCTA
GTGTGCAGCTGATGGGCACTGG
INTRON 5 - 6 4739901 4755240 15340
GTATGTAACATCTTTTTATAATTTT..........TTCTTCAAAATTGCTTTGTTTCCAG
6 EXON 6 4755241 4755379 2 0 139
GTTTCATTTTCTGGCAGGAGAGCCCAGAGGAGAAGTTCTTGACAACTCTTTCACTGGAGG
AATATGTAAACTTGTCAAGACCAGTCGAGCCAGTAATCCATACCGTGTTTCAGCCAATCT
GGAAAATGTCAACTTTGAG
INTRON 6 - 7 4755380 4759800 4421
GTATGACAGTGTGGCGTGGTGGTCA..........ATTTCTTACGCACTTTTTTGGTCAG
7 EXON 7 4759801 4760001 0 0 201
GTACAAACTATAGAAGATGACTTGAAAACAGAATTCTACAAGAATTTAATCTCTTTTGAA
AAAAATAAAAATGAAGACAGTCTTTCAGTGGATGAAAGGACAAAATTTTTCCCTATACCA
ATTTTCCATTTCTCAGAGAAAAATGAACATTCCCATTATAGCTCTGCCTTCAACAAAGTC
ATTAAAGCTTCCCACAAGAAG
INTRON 7 - 8 4760002 4763341 3340
GTAAGGAAATAGGTGATGATTCACT..........TTATGCTTTTGCCCTTTTTATTTAG
8 EXON 8 4763342 4763582 0 1 241
GATTCTAGCTTTATCAGGATCCATAAGCTGATAAAAGTCTTAAACTTCACAATGAAAGCA
ACAGACCTACAGCTTTCAGATGTCTTCCTGAAAGCCCTTGTCCACCTGCCTTTAGAATAC
AACTCTGCTGTGTACAGCCGGATATTTGATGACTTCGGGACCCACTACTTCACCTCAGGC
TCCCTTGGGGGCAAGTATGACCTTATCTACCAATTCAGCCGCCAGGAGCTACAGAACTCA
G
INTRON 8 - 9 4763583 4781839 18257
GTGTGTGCGCTTCGGTTAATTTGGC..........GTTTGCTTGGGTTTATATTTTTCAG
9 EXON 9 4781840 4781962 1 1 123
GTTTAACAGAAGAAGAAGCTCAAAACTGTGTCCAGTATGAAACAAAGAAACTTAAGTTTC
TTTATATGGAAATACACAAGGAAGACACGTGCACCAAAAACAAGCTGTCTGAAAAATATG
GAG
INTRON 9 - 10 4781963 4789478 7516
GTAACTGTTCTCTGGGCACTTTATC..........ATCATTTTCTTGAATCATCTTGCAG
10 EXON 10 4789479 4789645 1 0 167
GTTCCTTTTTGCAGGGATCAGAGAAATCCATTTCCCTGGTCCAGGGCGGGAGGAGTCAGC
AGGCAGCAGCCTTGGCTTGGGAGAAGGGCACCTCTGGTCCAGAGGAGAATGTCTATTCTG
AGTGGCTAGAATCGGTGAAGGAAAACCCTGCTGTAGTTGATTATAAG
INTRON 10 - 11 4789646 4790966 1321
GTGAGACTGAAGAGTTCTGTGGGTA..........AGTTGTCTCTGTCACCTGTTCGCAG
11 EXON 11 4790967 4791192 0 1 226
CTTGCCCCAATTACAGACTTGGTCAGAAACATCCCATGTGCAGTGACAAAACGGAACAAC
CTCAGGAGAGCGCTTCAAGAGTATGCAGCCAAGTTTGACCCTTGCCAGTGTGCTCCATGT
CCCAATAATGGCCGCCCCAGGCTCTCAGGCACTGAATGCCTGTGTGTGTGCCAGAGCGGC
ACCTACGGTGAGAACTGTGAGCGCAGGTCCCCAGATTACAAATCTG
INTRON 11 - 12 4791193 4792684 1492
GTAAGTGTCAGGAAATGATTGTCAG..........GGCTGTGGGTCTTCCTCTGTTACAG
12 EXON 12 4792685 4792856 1 2 172
ATGCAGTGGATGGAAACTGGGGCTGCTGGTCTTCCTGGAGTGCGTGCAATGCTGCTTATA
GGAGATCAAGAACCCGAGAGTGTAATAACCCTGCGCCACAGCGAGGAGGACAAAGCTGTG
GTGGCAAGGATCAGCAAGAAGAAGACTGTACAGTCTCAATAATGGAAAATGT
INTRON 12 - 13 4792857 4793129 273
GTAAGGTCGGGTGTGAGGGAGCAAA..........ACGCATTTATTTCTTTCCCTTTTAG
13 EXON 13 4793130 4793241 2 0 112
TGGACAACCATGTATCAATGATGATGAAGAAATGAAAGAGGTAGACCTTGCTGAGCCAGA
AGCAGAATCAGGGTGTTCTCAACCACCTCTCCCAGAAAACGCATTTACCTGG
INTRON 13 - 14 4793242 4796904 3663
GTGAGTGTCCTGAATGTAACTCTTG..........TTTCTTATTTCTCTTTTAATTCTAG
14 EXON 14 4796905 4797037 0 1 133
AATGAGAAGAAACTGTACTCAGTTGGGGAGGAAGTTGAAATTTCATGTCTTACTGGATTC
ACAGCTGTTGGATTCCAGTACTTGAGATGTTTACCAGACAGAACCTGGAGTCAAGGAGAT
GTGGAATGCCAAA
INTRON 14 - 15 4797038 4798251 1214
GTAAGCATGGGGCAAACACAAGCAT..........ATCGGAGATATTGTTCTCCCTGCAG
15 EXON 15 4798252 4798440 1 1 189
GGACCTCGTGCCTCAAGCCCGTTGTTCAGGATGTCCTGACCATCTCCCCATTTCAGAGAG
TGTATCAGATTGGGGAATCCATTGAGCTGACATGCCCCAGAGGCTTTGTTGTTGCTGGAC
CATCGAGGTATACATGCAAGGAAGACTCCTGGACACCTCCCATTTCAAATTCATTGACCT
GTGAACAAG
INTRON 15 - 16 4798441 4803622 5182
GTGAGCAAATCTGTGATTCCAAAGG..........CTAGCAGTTTTCTTGTTTTTCACAG
16 EXON 16 4803623 4804045 1 - 423
GTGTCAGAGACCATCCGTGAGAAAGTGATCCCTTCACAATCTCCTTAACAAGTCAAAGGG
CCTTGAACTAAGAGCTGGTTGCCACCCCCTTCCTCCTTATTCCCTTCCTAACACCTAAGG
CTGTAAAATTTGAATAACAGTCCCCTCTTCCCTATCTCTTTCCGAGTTCCCACGACATCC
AAAAACATGAGCTGTGCCTGAGCCCAGCTTGACTCCCAAGGCTGTTGAGGAGGATCAAGG
CTCCAGAGACAAGATGCAAAGTGCCTGCTGCTTGGCGCCTGACTTCAGCCCCCTTGTCAG
CAGTCTTCCTTTCCCTTGTTCTTTGTATAACTCTCCCTCGACCCCTCCCCTATTTTCCGC
GATGTATGCTTTATAAGGAAAGCACCTCAGCTTAATAAATGAGACCTTGATAGGTTTAAT
CTA
3' upstream sequence
CTTGGTCCTCCGGCTCTCTTTCTTTTCCTCCCATTTCCTTCCAGGTTCTCGGTCCCCATC
GCACCCATGAATAACTGAATCCCGCGGGACGGGATACACAGGTTCTTGTCTTAGACTAAG
ATCTGCCAAATCACCTCATTCTCTCTGCAGTCTTATGCCAGGGAATTCAACTCACAGTGG
TAGCCTTAACAGTTTCCTAACAGATTTAATGAATTTAATCCTTAGCACAGATTTCTTTGC
TGAGTTCTATTGATTGATGTTGGGCATAGGTGCAGCAGCAGACAGAGAAGGTCACCAAGA
TGCTAAGCCTTCATTTTCCAAAGGAGCAGAGGGGTTCAGACTTCTAAGAAAAGACTGACA
CTCATCTAAGTCACTCCAGTTACTATAGTTAAACATTATACAAGGTTAATTGGGGCTTGA
AAAGGTTCCAGCTTCTGAAGTTATCTTGCCCTTGCTACCCATGAGAGAAGACGGCACATA
GGAATCTCAGTCCCTTTTGACCATGGCTAGCCACAATCAAAAGTAAGAACTCCAGGCTTG
CCAGGAGTGTCTGAGGACCAAGGTTGGTGCAGCTGCATGTTCTCACATATCACAGAGAAC
AGATTATCTAGAGACAGCATTTCTTCAAGGTTCAAACGTCTCACAACAATTTCTCAGCCG
CCAGTGATTGACCCAAACATAGCAAATGCTTTGCTGAAATATTTCACTCAAAGACAGACA
TAAAGGCTTTACTATGAATTGCATTTAAATCCAGACATAAAGGTTTTACTATACATATTA
CTTCAGAGTTCTAAACAGGAATAGCCAAATTCCTCTAAGTCTACTTTACTTGGCTAAGGA
TACCACAAACTCAGTATGAGTAGAAAGAGATCTTGGTTCATCTTTCCCTTCCTGAAATGA
ACCATCCTTTGATACTTTCTCTTTCAGAAAAGGTCCCAGTACCTTTCTGTAGGTAAACCA
GACAATAAGAATTAAACTTGATTCCTACCATAACTTACCA..........

Sequence Detail Report

Gene Symbol (Gene ID) C6 (ENSMUSG00000022181)
Transcript ID ENSMUST00000162585
SNP Information
Strain :
Sequence Retrieve :
Exon translate :
CDS Start ( 1 ) - End ( 770 )
-
Strand : forward reverse
Show sequence : nucleotide amino acid
Color information