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Target CDS Information

Gene Symbol (Gene ID) Kcnq5 (ENSMUSG00000028033)
Cross Reference
EMBL AC110269, AC115920, AC125483, ...show all
GO GO:0005249, GO:0005251, GO:0006813, ...show all
goslim_goa GO:0003674, GO:0005575, GO:0005623, ...show all
MGI_trans_name Kcnq5-007
OTTP OTTMUSP00000054909
OTTT OTTMUST00000097899
UniParc UPI00021CF748
Uniprot/SPTREMBL G3UZ84
Vega_transcript Kcnq5-007, OTTMUST00000097899
Vega_translation 178828, OTTMUSP00000054909
Definition protein_id:ENSMUSP00000134389
translation:
MPRHHAGGEEGGAAGLWVRSGAAAAAGAGGGRPGSGMKDVESGRGRVLLNSAAARGDGLL
LLGTRAAALGGGGGGLRESRRGKQGARMSLLGKPLSYTSSQSCRRNVKYRRVQNYLYNVL
ERPRGWAFVYHAFVFLLVFGCLILSVFSTIPEHTKLASSCLLILIPLFSSLQ

Chromosome 1
Length
Position(start - end)
455747
21505833 - 21961581
Orient to Chromosome minus
Link Location : (1:21505833-21961581)
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Detail Map


 

Report

Polymorphisms Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Kcnq5 (ENSMUSG00000028033)
Transcript ID ENSMUST00000174183
Reports
substitution
cSNPs1
Insertion319
Deletion426
SNPs
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
Insertions
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
Deletions
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
coding sequence substitutions
premature termination by the nucleotide substitution0
synonymous num1
non-synonymous num0
synonymous substitutions 21961218 (p.Arg122Arg),
non-synonymous substitutions
B6 transcript
(ENSMUST00000174183)
MPRHHAGGEEGGAAGLWVRSGAAAAAGAGGGRPGSGMKDVESGRGRVLLNSAAARGDGLL
LLGTRAAALGGGGGGLRESRRGKQGARMSLLGKPLSYTSSQSCRRNVKYRRVQNYLYNVL
ERPRGWAFVYHAFVFLLVFGCLILSVFSTIPEHTKLASSCLLILIPLFSSLQ*
MSMv4 transcript
MPRHHAGGEEGGAAGLWVRSGAAAAAGAGGGRPGSGMKDVESGRGRVLLNSAAARGDGLL
LLGTRAAALGGGGGGLRESRRGKQGARMSLLGKPLSYTSSQSCRRNVKYRRVQNYLYNVL
ERPRGWAFVYHAFVFLLVFGCLILSVFSTIPEHTKLASSCLLILIPLFSSLQ*
homology100.00 (173 / 173)

Exon Detail Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Kcnq5 (ENSMUSG00000028033)
Transcript ID ENSMUST00000174183
No. Exon / Intron Start End Start Phase End Phase Length Sequence
5' upstream sequence
..........ACGCCACAGTCGCGGCGGAGATTTAAGCAGTTTTATGACTTTCTTTCACT
TACATGGAAATTTCTGGAAGGAGGGAAGTGGGCTCCTTTTCCCAGGCTGCTCTGTCAGGA
GGAGCTCCCTCACCACAAAGGAGCTACTTTGGAGTTTTACGCCCTCCCCACACCCCACCC
CTGGGGATGGGAAGGATGTTCTGCGACTCGCAGGCTTGTTGTCTGAGGCTAGGATGGAAA
GTCACAGCCTGCAGGCTGGATTGAGTCGCGGGAAGCTGCTGGGTCCCTGCCTGGCGCTCT
CCGGGTGTGTCCATTGAACTGCGGTGGGCTGGTCCCCAGCGCGGGAACCCAAACGCCACT
GCCAGAAGCTTAGCCCCCGCTGGGTCGCTCCTAGGCTAGCCAAAACCTGGAGGGTAGGAC
AGAACCTTTCCTGCCCACACCCATCACCCGAGGATGGCAGGACCAGGCGCGGCATAGCAG
CGGGAGAAGCCCAGAGACCCGCTCGTCCAGTTTATTCAAGAGGCAGACTTCGCCCTCCGG
ACAGCTCCGAGTCCCAGGAAGAACCGAACCAAACTCATCCTGGGAGACCGACTTAGGGTC
AAGCCGGTATTCTGCCGGGGTACAGGGGACAGACAGACTCGAACCCTGCTGGGTGTGCAC
GCGTGCGAGCGTGCCTCCGGGCATCCCGCACACCCTCAGTCCCGTGTGCCGACACTCCTC
GGGGAGGAGGGAGTGGCAGCCACCAGACTAAAGGAAAGCGAGGGACACCCCACAAAGTGA
CGCCCCCAACAGGTCCGGATTTGGAATTGGAAGCGGCAGAAATCCGGACCTCCCCGGGCC
TGCTCCGCACACCCCGCCGCCCCCGCCCGGAGCCCCGACTCTCGGCTAGCCCGCCCCCCC
GGGGCGCCCCGTCGGCTGCGGGTTTCCTCCTGCAGACCTGCCCGCGCACATGAAGCCGCT
GCCCCCGCCGCAGGCGCCAGCGCCCCCCTCGCGGTGCCCGTGGTGATGCC
1 EXON 1 21961181 21961581 - 2 401
ATGCCCCGCCACCACGCGGGAGGAGAGGAGGGCGGTGCCGCCGGGCTCTGGGTGAGGAGC
GGCGCGGCGGCGGCGGCAGGCGCGGGTGGGGGGCGCCCGGGCAGCGGCATGAAGGATGTG
GAGTCCGGCCGCGGCAGGGTGCTGCTGAACTCGGCGGCCGCCAGGGGCGACGGCCTGCTG
TTGCTCGGCACCCGCGCGGCGGCGCTCGGCGGAGGCGGCGGCGGCTTGAGAGAGAGCCGC
CGGGGCAAGCAGGGGGCCCGAATGAGCCTGCTGGGGAAGCCGCTCTCCTACACCAGCAGC
CAGAGCTGTCGGCGCAACGTCAAGTACCGGCGGGTGCAGAACTATCTGTACAACGTGCTG
GAGAGACCCCGCGGCTGGGCGTTCGTCTACCACGCGTTCGT
INTRON 1 - 2 21593615 21961180 367566
GTGAGTACCCGCGCCCCCACTTCCG..........AAACTTCTCTTCTGTTATTTTGCAG
2 EXON 2 21593524 21593614 2 0 91
TTTTCTCCTTGTGTTTGGTTGCTTGATTTTGTCAGTGTTTTCTACCATCCCTGAGCATAC
AAAATTGGCTTCAAGTTGCCTCTTAATTCTG
INTRON 2 - 3 21505860 21593523 87664
GTAAGTGAAAATATGTAGTTATATA..........GGCTGTCTCAACCTGTTTCTTGCAG
3 EXON 3 21505684 21505859 0 - 176
ATACCATTGTTCTCATCGCTTCAATAGCAGTTGTCTCTGCAAAAACTCAGGGTAATATTT
TCGCCACGTCAGCGCTCAGAAGTCTCCGGTTCCTACAGATCCTGCGTATGGTGCGCATGG
ACAGAAGGGGAGGGACCTGGAAGCTGCTCGGCTCTGTGGTTTATGCTCACAGCAAG
INTRON 3 - 4 21505426 21505683 258
GTAAAAGTGCGCTCTCTGCACCGTA..........AATGTTTCATTCCGTTTATACCTAG
4 EXON 4 21505300 21505425 - - 126
GAATTAATCACAGCCTGGTACATTGGATTCCTAGTTCTTATTTTTTCATCCTTCCTTGTC
TATCTTGTGGAAAAAGATGCCAATAAAGAGTTTTCGACATATGCGGATGCTCTCTGGTGG
GGCACA
INTRON 4 - 5 21487334 21505299 17966
GTAAGTATAAAAATCTGTTTTTATC..........GATGTTCTGTTGACTTTGTTTCCAG
5 EXON 5 21487223 21487333 - - 111
ATCACACTGACAACCATTGGCTATGGAGACAAAACACCCCTAACGTGGCTGGGAAGACTG
CTCTCTGCAGGCTTCGCACTCCTTGGCATTTCTTTCTTTGCACTTCCTGCT
INTRON 5 - 6 21479470 21487222 7753
GTGAGTATCCTCTTAACAAAGCTGC..........GCTACTATTTTGTATTTTGTTCCAG
6 EXON 6 21479374 21479469 - - 96
GGCATTCTCGGCTCAGGTTTTGCATTAAAAGTACAGGAGCAGCACCGCCAGAAGCATTTT
GAGAAAAGAAGGAACCCAGCTGCCAACCTCATCCAG
INTRON 6 - 7 21469565 21479373 9809
GTATATCCATGTCAGCGTGGGAGGC..........TTATGCTCCTGGGTGCCGCATGCAG
7 EXON 7 21469470 21469564 - - 95
TGTGTCTGGCGTAGTTATGCAGCTGATGAAAAATCTGTTTCCATTGCAACCTGGAAGCCA
CATCTGAAGGCCTTGCACACCTGCAGCCCTACCAA
INTRON 7 - 8 21457625 21469469 11845
GTAGGTATCAGTGGGGCAGCTGGTG..........ATAACCGTGGCTCTGTTTTCCACAG
8 EXON 8 21457404 21457624 - - 221
TCAGAAGCTGAGCTTTAAGGAGCGAGTGCGCATGGCTAGCCCAAGGGGCCAGAGCATTAA
GAGCAGACAAGCATCAGTAGGTGACAGGAGATCCCCGAGCACTGACATCACTGCCGAGGG
CAGCCCCACCAAAGTCCAGAAGAGTTGGAGCTTCAACGACCGAACCCGCTTCAGGCCCTC
ACTACGGCTCAAGAGTTCCCAGCCAAAGCCAGTGATAGACG
INTRON 8 - 9 21424158 21457403 33246
GTAAGCCTGGCCCTCGTGACAATTT..........AGCTGGTGGTGTTTGTCTCTTGCAG
9 EXON 9 21424049 21424157 - - 109
CCGACACAGCCCTTGGCATTGATGATGTGTATGATGAGAAAGGATGCCAGTGTGACGTCT
CTGTGGAGGACCTCACCCCACCACTTAAAACTGTCATCCGAGCAATCAG
INTRON 9 - 10 21405925 21424048 18124
GTGGGTAAAACCCGTGAACAAAACT..........TAATATTCACTATGTATTGATACAG
10 EXON 10 21405793 21405924 - - 132
AATTATGAAGTTTCATGTTGCAAAGCGGAAGTTTAAGGAAACATTACGCCCATATGATGT
AAAAGATGTCATTGAACAATACTCTGCTGGTCACCTGGACATGCTTTGTAGAATAAAAAG
CCTTCAGACACG
INTRON 10 - 11 21405059 21405792 734
GTAAGCAATGGGCATGGAAACTATC..........ACCAGAAATCTTCTTTGTCTGGCAG
11 EXON 11 21404932 21405058 - - 127
CGTTGATCAAATTCTTGGAAAAGGACAAATGACGTCAGATAAGAAGAGCCGAGAGAAAAT
AACAGCAGAACACGAGACAACAGATGACCCCAGCATGCTCGCCCGGGTTGTGAAGGTTGA
GAAACAG
INTRON 11 - 12 21403126 21404931 1806
GTAGGGCTCAGCCCCACTTTCAGCT..........GTCTAACTATTCTCTCCGCTTCCAG
12 EXON 12 21402163 21403125 - - 963
GTCCAGTCCATCGAATCCAAGCTGGACTGCCTGCTGGATATCTATCAACAGGTCCTCCGG
AAAGGCTCTGCCTCCGCCCTCACTCTGGCTTCCTTTCAGATCCCGCCTTTTGAATGTGAA
CAGACCTCTGACTATCAAAGTCCTGTGGATAGCAAAGACCTGTCTGGCTCAGCACAAAAC
AGCGGCTGTTTAACGAGGTCAGCCAGTGCCAACATCTCAAGAGGCCTGCAGTTCATCCTA
ACACCAAATGAGTTCAGTGCTCAGACTTTCTATGCGCTTAGCCCTACTATGCACAGCCAA
GCTACCCAGGTGCCCATGAGTCAAAATGACGGCTCCTCCGTGGTAGCCACCAATAACATT
GCAAACCAAATAAGCGCCGCACCCAAGCCAGCAGCCCCAACAACTTTACAGATCCCTCCT
CCTCTCTCGGCCATCAAGCACTTGTCCAGGCCAGAACCTCTGCTCTCAAACCCCACCGGC
TTACAAGAGAGTATTTCTGATGTCACCACCTGCCTTGTTGCCTCCAAGGAAAGTGTTCAG
TTTGCACAGTCAAACCTGACCAAGGACCGTTCCCTGAGGAAAAGTTTCGACATGGGAGGA
GAAACTCTGTTGTCTGTCCGCCCCATGGTGCCCAAGGATTTGGGCAAATCTCTGTCTGTA
CAAAACCTGATCAGGTCGACAGAAGAACTGAACTTACAGTTTTCAGGCAGCGAGTCAAGC
GGCTCTCGAGGCAGCCAAGATTTTTATCCCAAGTGGAGAGAATCCAAATTGTTTATAACT
GATGAGGAGGTCGGTGCCGAAGAGACAGAAACAGATACTTTTGACGGCACCCCACCGCCT
GCGGGGGAGGCTGCTTTCTCATCAGACTCTCTAAGGACTGGAAGGTCACGGTCATCTCAG
AACATTTGTAAGACAGGAGACAGTACAGACGCCCTCAGTTTGCCTCACGTCAAACTGAAC
TAA
3' upstream sequence
GTTCTTTGTTTCCTTTCTAAGCATAGCTGTTCTTTTAGCCATACATATCACTGCATGAAG
TACTCTGGAAGCCCGTCTATAGAGTTGAAATCGCACAAGAGTCAGGAAGAACGCGAAAGG
CCATTTATAAGCCTGTTATCTTTTAATTGCATGAAAATGCATGTTTAGGGGTGGCAGAAA
TTCCAAGGTACATCGACATTAATCCATGCATTTAATAACGTACCTTGAGTCTAAAATCCC
AAGCCAACAGTCGCTGCTGATGCTATGGGGTGTGTGAAGATGCCGGGATATTAGTTCAAT
TGCAAGAGTTGACGCTGTGTTTTGAAATTGTGAAAGTAAACACCTTCAAATTTCAGGCAT
TTCTGCTTTATGACTAGATACCAAGTACATTTTCAAAATTAGGCCATAATGTATGTTTAG
ACACAATGGCTATCAACAGCTGCTAATAACAAAAGAAAAGCAGAATTTGGGATATAACCG
AAATGGCTGCTTATTTCAAGAAACCTTTGCCAGCCCGTTTCTCCTAAGTCATTTCATCAA
TGTGATTTGAATGTCAATCTGTGTGCTTCTGGTGACTTAGCGCTGTGGCAAGCAGTTTCG
CACATTGTTTTCATGTTGTCCTTTACGCTGCAAATGTTTTCCAATTAGAATATGGCCAGA
TAATGTTATTGAGGGCCAGTGGGGGAGGAGACCTCCCCTTCCTATGGCATCTTCCACTTC
ATGACAACATAGTCTCTAATGGAGGAGTCAACCCTGAAAATGGTCAACCTCTCTACAAGC
ATATGAAGTACTGGTGGATTTAACAGCCTGTGCAACGGGGCTGGTCTCTCTGTGAGGATA
CAACCACAGGTTTGCCCATCCTGTCCCCTCAAATGGCCAGGGTGACTAGCAATTTCCATT
TAGTGGACATAGAGCTATAGGGCCTGGGGAAGGGGTTTCCTACTTGAGGTTGGGGGAAAA
CAACTTGGAAAGACTCCACAGTTACCACAGGTAGGTGACA..........

Sequence Detail Report

Gene Symbol (Gene ID) Kcnq5 (ENSMUSG00000028033)
Transcript ID ENSMUST00000174183
SNP Information
Strain :
Sequence Retrieve :
Exon translate :
CDS Start ( 1 ) - End ( 173 )
-
Strand : forward reverse
Show sequence : nucleotide amino acid
Color information