MoG+ -Mouse Genome database with high added value-

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BAC clone ordering.

Target CDS Information

Gene Symbol (Gene ID)

Rpl31 (ENSMUSG00000073702)

Cross Reference

CCDS	CCDS14904.1
EMBL	AF362574, AK011236, AK014295, ...show all
Fantom	2600017C16, 2700055G03, 3200001N24, ...show all
GO	GO:0003735, GO:0005925, GO:0006412, ...show all
goslim_goa	GO:0003674, GO:0003723, GO:0003735, ...show all
MGI_trans_name	Rpl31-005
OTTP	OTTMUSP00000068849
OTTT	OTTMUST00000127694
protein_id	AAH50113.1, AAH55720.1, AAH86916.1, ...show all
Reactome	R-MMU-156827, R-MMU-156842, R-MMU-156902, ...show all

UCSC	uc029qnx.1
UniParc	UPI00000227C3
Uniprot/SPTREMBL	Q5M9K9
Uniprot/SWISSPROT	P62900
Vega_transcript	OTTMUST00000127694, Rpl31-005
Vega_translation	179091, OTTMUSP00000068849

Definition

protein_id:ENSMUSP00000137631
translation:

MAPAKKGGEKKKGRSAINEVVTREYTINIHKRIHGVGFKKRAPRALKEIRKFAMKEMGTP
DVRIDTRLNKAVWAKGIRNVPYRIRVRLSRKRNEDEDSPNKLYTLVTYVPVTTFKNLQTV
NVDEN

Chromosome

1

Length
Position(start - end)

3183
39368149 - 39371333

Orient to Chromosome

plus

Link

Location : (1:39368149-39371333)
/

Detail Map

Report

Polymorphisms
Exon
Sequence

Polymorphisms Report

Gene Symbol (Gene ID)	Rpl31 (ENSMUSG00000073702)
Transcript ID	ENSMUST00000179954

Reports
substitution
cSNPs	1
Insertion	14
Deletion	18
SNPs	-1kb 39363016(c.-5133A>G), 39363038(c.-5111A>G), 39363402(c.-4747C>T), 39363586(c.-4563T>C), 39363593(c.-4556T>G), 39363605(c.-4544C>T), 39363876(c.-4273G>C), 39363895(c.-4254A>G), 39364060(c.-4089A>G), 39364277(c.-3872T>A), 39364344(c.-3805A>G), 39364446(c.-3703C>G), 39364475(c.-3674T>C), 39364519(c.-3630A>G), 39364627(c.-3522A>C), 39364747(c.-3402T>C), 39364774(c.-3375A>G), 39364850(c.-3299C>A), 39365071(c.-3078C>T), 39365083(c.-3066A>G), 39365121(c.-3028A>G), 39365130(c.-3019A>G), 39365133(c.-3016C>T), 39365251(c.-2898G>A), 39365782(c.-2367C>T), 39365830(c.-2319A>G), 39366026(c.-2123T>C), 39366563(c.-1586T>C), 39366743(c.-1406A>C), 39366789(c.-1360C>T), 39366821(c.-1328T>C), 39366871(c.-1278A>G), 39366890(c.-1259G>A), 39367312(c.-837C>T), 39367583(c.-566A>G), 39367689(c.-460T>A), 39367739(c.-410T>C), 39367754(c.-395T>C), 39367801(c.-348C>T), 5'UTR 39368061(c.-88C>A), 39368141(c.-8G>A), CDS 39370999(c.279T>C), 3'UTR 39371341(c.8G>A), INTRON 39368349(c.107+94T>A), 39368352(c.107+97A>T), 39368373(c.107+118C>T), 39368377(c.107+122G>A), 39368635(c.107+380A>G), 39368752(c.107+497G>T), 39368829(c.107+574C>G), 39369013(c.107+758G>T), 39369182(c.108-832C>T), 39369239(c.108-775T>C), 39369440(c.108-574T>C), 39369528(c.108-486C>G), 39369530(c.108-484A>G), 39369560(c.108-454G>A), 39369736(c.108-278A>G), 39370148(c.233+9G>A), 39370301(c.233+162A>G), 39370400(c.233+261A>T), 39370498(c.233+359A>G), 39370575(c.234-379G>T), 39371092(c.346+26G>A), +1kb 39371437(c.104A>G), 39371487(c.154A>C), 39371579(c.246A>C), 39371750(c.417G>T), 39371855(c.522A>T), 39372343(c.1010C>T), 39372389(c.1056C>T), 39372483(c.1150A>G), 39372598(c.1265G>A), 39373015(c.1682G>A), 39373103(c.1770A>G), 39373295(c.1962G>A), 39373317(c.1984G>A), 39373342(c.2009A>T), 39373602(c.2269T>C), 39373605(c.2272C>T), 39373635(c.2302T>A), 39373717(c.2384G>A), 39373811(c.2478G>A), 39375502(c.4169A>G), 39375507(c.4174A>G), 39375619(c.4286T>C), 39375636(c.4303T>C), 39375751(c.4418A>T), 39375849(c.4516G>A), 39375932(c.4599T>C), 39375973(c.4640T>C), 39376111(c.4778C>G), 39376133(c.4800A>C),
Insertions	-1kb 39364124 (c.-4025_-4024insCATT), 39366517 (c.-1632_-1631insT), 5'UTR CDS 3'UTR INTRON 39368732 (c.107+478_107+479dupTT), 39370201 (c.233+62_233+63insGGTGC), 39370378 (c.233+241_233+242insCCTCT), +1kb 39372277 (c.944_945insT), 39373376 (c.2043dupT), 39373447 (c.2114_2115insTCCT), 39374293 (c.2960dupA), 39374510 (c.3174_3177dupTACC), 39374746 (c.3413dupG), 39374811 (c.3478_3479insTTTAA), 39375507 (c.4174_4175insCT), 39375973 (c.4640_*4641insA),
Deletions	-1kb 39363904 (c.-4244_-4241delTGGT), 39367244 (c.-904_-903delAG), 5'UTR CDS 3'UTR INTRON 39368406 (c.107+152delG), 39368474 (c.107+220delT), 39368607 (c.107+353delT), 39369045 (c.107+800delC), 39369263 (c.108-746delT), 39369593 (c.108-417_108-415delTTT), 39369979 (c.108-26delT), 39370469 (c.233+331_233+336delTAAGAT), +1kb 39373930 (c.2598delT), 39374260 (c.2928_2935delCATACACA), 39374554 (c.3222_3223delTG), 39374624 (c.3292_3293delTT), 39374875 (c.3543_3550delTTAATTAA), 39375162 (c.3830_3831delAG), 39375675 (c.4343_4347delAAAAA), 39375796 (c.4464delA),
coding sequence substitutions
premature termination by the nucleotide substitution	0
synonymous num	1
non-synonymous num	0
synonymous substitutions	39370999 (p.Asn93Asn),
non-synonymous substitutions
B6 transcript (ENSMUST00000179954)	MAPAKKGGEKKKGRSAINEVVTREYTINIHKRIHGVGFKKRAPRALKEIRKFAMKEMGTP DVRIDTRLNKAVWAKGIRNVPYRIRVRLSRKRNEDEDSPNKLYTLVTYVPVTTFKNLQTV NVDEN*
MSMv4 transcript	MAPAKKGGEKKKGRSAINEVVTREYTINIHKRIHGVGFKKRAPRALKEIRKFAMKEMGTP DVRIDTRLNKAVWAKGIRNVPYRIRVRLSRKRNEDEDSPNKLYTLVTYVPVTTFKNLQTV NVDEN*
homology	100.00 (126 / 126)

Exon Detail Report

Gene Symbol (Gene ID)	Rpl31 (ENSMUSG00000073702)
Transcript ID	ENSMUST00000179954

No.	Exon / Intron	Start	End	Start Phase	End Phase	Length	Sequence
	5' upstream sequence						..........CATCGCTCCAGACTTCCTTTTAAATTATTTTTGAGTGGCTCTGCTTGGGA GATTGCGTTGCAATTTTCTGAGCTCAACCCCAGTACCAATCAGCACTCCCATAGAACCCC TTCTGGTTTGGATTCTCTAAGAACTAGAACCGAGCCTGTCTGCTCCTTTCCTCCTAGCCC CACTGAGAAGTCATCAGATATTGTCAAGCGTGTTTAGCCCACTACAGTCAAGGATATCTC GAACTCCTGATCACCTAACTCAACCCACAAAGTTCTGGGATCACAGGTGTGCACCACCAC ACGTGGCTGTGGACACTATTTTCTTAAGAGAGAGAGAGCAGTTGCCTGTCCACCCCAAGT CTGACCTTTGGGGAATCCAAAGGCCCCAGCATCTCTTAGCCAAAGGAGGCAGAGACATAG GTTCCTTGTAAGATCGTGGAGTTTCTGCCTGCCTGTCTTCTTGCCTGTGAGATCCTGAAA CTTGCTCATTGCTGAAACTCCAATAGACAGGCTATTCGGACATGTTTAGATTCGGAGATC TATTTTCTACGGACGTGCCTGGCATTTCCGTGGGCATTTTCGACTTGGAAAATAAATTCT TTTGTTGTCGTCTCGGTCATTCCGGGGACCTTCCGCCAAGCACAGTATCTAATAGATTAA ACAAGCGTAGAGTGAGTGAGCGAGTGCACCCGAAAAACTGGAGTATCTTCCCTCCCGGCC GGGCGTTCCGAATCCGGGTTCGGGTTGGGATTTAAATCCCATCCCGCACCACCACTGCTC AAGGCAGATTGCAAGAAGACTGACAAGATCGACCCCGCCCCGGGCCCGCCCTGGGCCCGC CCCATGCCGCTCGCTCCGCCCCTGACGCGCGCTGTATTTACGTCCCAGCCTAACTCCTAA CTTCCCTCGCCACACCTCTTCCTCCTCGCCTCCCCGTGACCCGGAAGTTGTACGGCTACG CGACTTTCCCTCCCACAAACCCTCGCGCCCTTCCTTTCCTACTTGGGCCC
1	EXON 1	39367929	39368255	-	2	327	GGCAGAGTGAGTATGGCTGCGGGGTCGCGGCTCTGAAATCCGGCGCCATCCGCGCCCGGC GCGGGACGGGCAGGCTCGGTGGGGTTTGTCCCGCGCCGCGCGGAGGCTCTGCGGTCCGGG GCGGTGGGAGGAAGGCCTGCGGGGTACGGGTGCACCTTAGCTCGGGCTTGGGCTTTCCCA CTACCTGCTTAGAGCCTCCCTCCCTGTCGCCTACGTCTAGATGGCTCCCGCAAAGAAGGG TGGCGAGAAGAAGAAGGGCCGTTCTGCCATCAACGAGGTGGTGACCCGAGAATACACCAT CAACATTCACAAGCGCATCCATGGAGT
	INTRON 1 - 2	39368256	39370013			1758	GTGAGTACCGGGCGGGCGGTGTGGC..........AATGTGCTTGTGTTCTGAACCTTAG
2	EXON 2	39370014	39370139	2	2	126	GGGCTTCAAGAAGCGTGCTCCTCGGGCACTCAAAGAAATTCGGAAGTTTGCCATGAAGGA AATGGGGACACCAGATGTGCGCATTGACACCAGGCTCAATAAAGCCGTCTGGGCCAAGGG AATAAG
	INTRON 2 - 3	39370140	39370953			814	GTACTGAAATTACTTGGTGCAGTGA..........GACCTTAGCAACACATTTTTATTAG
3	EXON 3	39370954	39371066	2	1	113	GAACGTTCCATATCGCATCCGAGTACGCTTGTCCAGAAAACGTAACGAGGATGAGGATTC CCCAAACAAGCTCTACACGCTGGTAACTTACGTGCCTGTTACCACATTCAAAA
	INTRON 3 - 4	39371067	39371301			235	GTAAGTATCCCAGCGTTCCGCAGGA..........TGACTGGCTGTTACTCTCCTTCCAG
4	EXON 4	39371302	39371365	1	-	64	ATCTACAGACGGTCAACGTGGATGAGAACTAACCTGCTCATGTCAAATAAAGTTGCAGAA CTGC
	3' upstream sequence						CTTCAGGGTTTGGTTTTCCTTTCTGTTGTCTGCCTCATGGGTGGAATTTTTGGGTCTACA GGGTGTTGGAAGTTAATCTGAGAATCTCTGTTCTGGGTACATGGGAAATTAGAAATACGT GCAACATTCTTTTCACAGAAGTCACTTTATTAGGATTGTGGATTTGGGTTGGTTTTGAAA CAGGGTTTCTTGTGGCACTGCTTGTTCTATAGACTAGGGTGGCCTTGAACTCAGAAATCC ACCTGCCTTTTCCTCCCTAGTATTGGCAATTAAATGCCCAGCTTGTTTGTAAGCTCTCAT TTTCAGTTCCAGGTTTATGTGTGAGCCTAAGATTAGGTAAAGATTGAGGTTATAACTTAA ACGTACTGAATTAACTTATGTTGTTTGGGTCCCAGGAATTGGACCTGGGACATCAACTCT GCCTTTCCAGCCATCTTTGCCAACCAGTAGCTCATCTCTGGGATGTGTCTGCCCTCAAAA TGACATTTTTAAAAAGTCAGTACAAAAGAACGATTTTTATTAAAAACCTTGAGGACAAAC ATTAAAGGCATGGTTTGAACATGTTTTTGTAAGGGCATATAAAGTGAATACGAGATATAT TAAATGGTTTCAATTACCAGCATTGAAACAAAATTAGTGCAAAAAAAAGCCAAATACAGT TGTACAGGCAATGGTTCTGGGATCTCTTGTTTCTGACCAGTGGAAACATGAGCCTGGGGT TGGTGTCTCTTAGTTACGGTGGCATCTTTTTCTTCATCAAAGGGCAGACTCACTATCAGG ATCACAACAGAAACACTGGTCTCAGCAAAGTTGATAGTCACAGTGTATGTAAACAGGGCG TCCCACCACTCACCTGTCCTCTTAATAAATAGAAATGCGTCAGACCTGCAGCTGTGACTG AGGTGGTGGAGCTCCCTGGTTGTAGGCTGACAGCTCTTGCTTTGGTGTGGTCGGCTCCAG TGTGTTCTCCAGCAGCTTAGGGCCTACAGGTCATTGAGCT..........

Sequence Detail Report

Gene Symbol (Gene ID)	Rpl31 (ENSMUSG00000073702)
Transcript ID	ENSMUST00000179954

		SNP Information
Strain :
Sequence Retrieve :
Exon translate : CDS Start ( 1 ) - End ( 126 ) -
Strand :	forward reverse
Show sequence :	nucleotide amino acid
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