MoG+ -Mouse Genome database with high added value-

Target CDS Information

Gene Symbol (Gene ID)

Rpl31 (ENSMUSG00000073702)

Cross Reference

EMBL	AC132571, CH466536
GO	GO:0003735, GO:0005925, GO:0006412, ...show all
goslim_goa	GO:0003674, GO:0003723, GO:0003735, ...show all
MGI_trans_name	Rpl31-002
OTTP	OTTMUSP00000068847
OTTT	OTTMUST00000127692
protein_id	EDL14557.1
UCSC	uc007ate.2
UniParc	UPI000154A6DF
Uniprot/SPTREMBL	A0A0A6YX26

Vega_transcript	OTTMUST00000127692, Rpl31-002
Vega_translation	179089, OTTMUSP00000068847

Definition

protein_id:ENSMUSP00000141808
translation:

MAPAKKGGEKKKGRSAINEVVTREYTINIHKRIHGVGFKKRAPRALKEIRKFAMKEMGTP
DVRIDTRLNKAVWAKGIRNVPYRIRVRLSRKRNEDEDSPNKLYTLVTYVPVTTFKSKYPS
VPQELLYVR

Chromosome

Length
Position(start - end)

2960
39368149 - 39371110

Orient to Chromosome

plus

Link

Location : (1:39368149-39371110)
/

Detail Map

name	Rpl31 (ENSMUSG00000073702)
type	gene
link	VEGA Ensembl MGI
xref
definition	locus_tag : Rpl31 note : ribosomal protein L31 [Source:MGI Symbol;Acc:MGI:2149632]

name	Tbc1d8 (ENSMUSG00000003134)
type	gene
link	VEGA Ensembl MGI
xref
definition	locus_tag : Tbc1d8 note : TBC1 domain family, member 8 [Source:MGI Symbol;Acc:MGI:1927225]

name	Rpl31 (ENSMUSG00000073702)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000086535

name	Rpl31 (ENSMUSG00000073702)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000194746

name	Rpl31 (ENSMUSG00000073702)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000178079

name	Rpl31 (ENSMUSG00000073702)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000179954

name	Rpl31 (ENSMUSG00000073702)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000195123

name	Tbc1d8 (ENSMUSG00000003134)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000054462

name	Tbc1d8 (ENSMUSG00000003134)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000192099

name	Tbc1d8 (ENSMUSG00000003134)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000192531

name	Tbc1d8 (ENSMUSG00000003134)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000193823

name	Rpl31 (ENSMUSG00000073702) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	CCDS:CCDS14904.1 Uniprot/SWISSPROT:P62900 RefSeq_peptide:NP_001239147 RefSeq_peptide:NP_001239148 RefSeq_peptide:NP_444487 RefSeq_mRNA:NM_001252218.1 RefSeq_mRNA:NM_001252219.1 RefSeq_mRNA:NM_053257.3 Vega_transcript:OTTMUST00000127691 Vega_transcript:Rpl31-001 Uniprot/SPTREMBL:Q5M9K9 UCSC:uc007atf.2 Fantom:2600017C16 Fantom:2700055G03 Fantom:3200001N24 Fantom:9530065G07 EMBL:AF362574 EMBL:AK011236 EMBL:AK014295 EMBL:AK020627 EMBL:AK160620 EMBL:BC008223 EMBL:BC050113 EMBL:BC055720 EMBL:BC086916 EMBL:BC099436 EMBL:CH466536 GO:GO:0003735 GO:GO:0005925 GO:GO:0005925 GO:GO:0006412 GO:GO:0016020 GO:GO:0016020 GO:GO:0022625 GO:GO:0022625 GO:GO:0044822 GO:GO:0044822 GO:GO:0070062 GO:GO:0070062 MGI_trans_name:Rpl31-001 Vega_translation:179088 Vega_translation:OTTMUSP00000068846 goslim_goa:GO:0003674 goslim_goa:GO:0003723 goslim_goa:GO:0003735 goslim_goa:GO:0005198 goslim_goa:GO:0005575 goslim_goa:GO:0005576 goslim_goa:GO:0005622 goslim_goa:GO:0005623 goslim_goa:GO:0005737 goslim_goa:GO:0005829 goslim_goa:GO:0005840 goslim_goa:GO:0006412 goslim_goa:GO:0008150 goslim_goa:GO:0009058 goslim_goa:GO:0034641 goslim_goa:GO:0043226 protein_id:AAH50113.1 protein_id:AAH55720.1 protein_id:AAH86916.1 protein_id:AAH99436.1 protein_id:AAK70404.1 protein_id:BAB27484.1 protein_id:BAB29251.1 protein_id:BAB32156.1 protein_id:BAE35920.1 protein_id:EDL14556.1 OTTP:OTTMUSP00000068846 OTTT:OTTMUST00000127691 Reactome:R-MMU-156827 Reactome:R-MMU-156842 Reactome:R-MMU-156902 Reactome:R-MMU-1799339 Reactome:R-MMU-392499 Reactome:R-MMU-72613 Reactome:R-MMU-72689 Reactome:R-MMU-72706 Reactome:R-MMU-72737 Reactome:R-MMU-72764 Reactome:R-MMU-72766 Reactome:R-MMU-74160 Reactome:R-MMU-927802 Reactome:R-MMU-975956 Reactome:R-MMU-975957 UniParc:UPI00000227C3
definition	note : transcript_id=ENSMUST00000086535 protein_id : ENSMUSP00000083722 translation : MAPAKKGGEKKKGRSAINEVVTREYTINIHKRIHGVGFKKRAPRALKEIRKFAMKEMGTPDVRIDTRLNKAVWAKGIRNVPYRIRVRLSRKRNEDEDSPNKLYTLVTYVPVTTFKNLQTVNVDEN

name	Rpl31 (ENSMUSG00000073702) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000127692 Vega_transcript:Rpl31-002 Uniprot/SPTREMBL:A0A0A6YX26 UCSC:uc007ate.2 EMBL:AC132571 EMBL:CH466536 GO:GO:0003735 GO:GO:0005925 GO:GO:0006412 GO:GO:0016020 GO:GO:0022625 GO:GO:0044822 GO:GO:0070062 MGI_trans_name:Rpl31-002 Vega_translation:179089 Vega_translation:OTTMUSP00000068847 goslim_goa:GO:0003674 goslim_goa:GO:0003723 goslim_goa:GO:0003735 goslim_goa:GO:0005198 goslim_goa:GO:0005575 goslim_goa:GO:0005576 goslim_goa:GO:0005622 goslim_goa:GO:0005623 goslim_goa:GO:0005737 goslim_goa:GO:0005829 goslim_goa:GO:0005840 goslim_goa:GO:0006412 goslim_goa:GO:0008150 goslim_goa:GO:0009058 goslim_goa:GO:0034641 goslim_goa:GO:0043226 protein_id:EDL14557.1 OTTP:OTTMUSP00000068847 OTTT:OTTMUST00000127692 UniParc:UPI000154A6DF
definition	note : transcript_id=ENSMUST00000194746 protein_id : ENSMUSP00000141808 translation : MAPAKKGGEKKKGRSAINEVVTREYTINIHKRIHGVGFKKRAPRALKEIRKFAMKEMGTPDVRIDTRLNKAVWAKGIRNVPYRIRVRLSRKRNEDEDSPNKLYTLVTYVPVTTFKSKYPSVPQELLYVR

name	Rpl31 (ENSMUSG00000073702) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	CCDS:CCDS14904.1 Uniprot/SWISSPROT:P62900 Vega_transcript:OTTMUST00000127693 Vega_transcript:Rpl31-003 Uniprot/SPTREMBL:Q5M9K9 UCSC:uc029qnw.1 Fantom:2600017C16 Fantom:2700055G03 Fantom:3200001N24 Fantom:9530065G07 EMBL:AF362574 EMBL:AK011236 EMBL:AK014295 EMBL:AK020627 EMBL:AK160620 EMBL:BC008223 EMBL:BC050113 EMBL:BC055720 EMBL:BC086916 EMBL:BC099436 EMBL:CH466536 GO:GO:0003735 GO:GO:0005925 GO:GO:0006412 GO:GO:0016020 GO:GO:0022625 GO:GO:0044822 GO:GO:0070062 MGI_trans_name:Rpl31-003 Vega_translation:179090 Vega_translation:OTTMUSP00000068848 goslim_goa:GO:0003674 goslim_goa:GO:0003723 goslim_goa:GO:0003735 goslim_goa:GO:0005198 goslim_goa:GO:0005575 goslim_goa:GO:0005576 goslim_goa:GO:0005622 goslim_goa:GO:0005623 goslim_goa:GO:0005737 goslim_goa:GO:0005829 goslim_goa:GO:0005840 goslim_goa:GO:0006412 goslim_goa:GO:0008150 goslim_goa:GO:0009058 goslim_goa:GO:0034641 goslim_goa:GO:0043226 protein_id:AAH50113.1 protein_id:AAH55720.1 protein_id:AAH86916.1 protein_id:AAH99436.1 protein_id:AAK70404.1 protein_id:BAB27484.1 protein_id:BAB29251.1 protein_id:BAB32156.1 protein_id:BAE35920.1 protein_id:EDL14556.1 OTTP:OTTMUSP00000068848 OTTT:OTTMUST00000127693 Reactome:R-MMU-156827 Reactome:R-MMU-156842 Reactome:R-MMU-156902 Reactome:R-MMU-1799339 Reactome:R-MMU-392499 Reactome:R-MMU-72613 Reactome:R-MMU-72689 Reactome:R-MMU-72706 Reactome:R-MMU-72737 Reactome:R-MMU-72764 Reactome:R-MMU-72766 Reactome:R-MMU-74160 Reactome:R-MMU-927802 Reactome:R-MMU-975956 Reactome:R-MMU-975957 UniParc:UPI00000227C3
definition	note : transcript_id=ENSMUST00000178079 protein_id : ENSMUSP00000136354 translation : MAPAKKGGEKKKGRSAINEVVTREYTINIHKRIHGVGFKKRAPRALKEIRKFAMKEMGTPDVRIDTRLNKAVWAKGIRNVPYRIRVRLSRKRNEDEDSPNKLYTLVTYVPVTTFKNLQTVNVDEN

name	Rpl31 (ENSMUSG00000073702) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	CCDS:CCDS14904.1 Uniprot/SWISSPROT:P62900 Vega_transcript:OTTMUST00000127694 Vega_transcript:Rpl31-005 Uniprot/SPTREMBL:Q5M9K9 UCSC:uc029qnx.1 Fantom:2600017C16 Fantom:2700055G03 Fantom:3200001N24 Fantom:9530065G07 EMBL:AF362574 EMBL:AK011236 EMBL:AK014295 EMBL:AK020627 EMBL:AK160620 EMBL:BC008223 EMBL:BC050113 EMBL:BC055720 EMBL:BC086916 EMBL:BC099436 EMBL:CH466536 GO:GO:0003735 GO:GO:0005925 GO:GO:0006412 GO:GO:0016020 GO:GO:0022625 GO:GO:0044822 GO:GO:0070062 MGI_trans_name:Rpl31-005 Vega_translation:179091 Vega_translation:OTTMUSP00000068849 goslim_goa:GO:0003674 goslim_goa:GO:0003723 goslim_goa:GO:0003735 goslim_goa:GO:0005198 goslim_goa:GO:0005575 goslim_goa:GO:0005576 goslim_goa:GO:0005622 goslim_goa:GO:0005623 goslim_goa:GO:0005737 goslim_goa:GO:0005829 goslim_goa:GO:0005840 goslim_goa:GO:0006412 goslim_goa:GO:0008150 goslim_goa:GO:0009058 goslim_goa:GO:0034641 goslim_goa:GO:0043226 protein_id:AAH50113.1 protein_id:AAH55720.1 protein_id:AAH86916.1 protein_id:AAH99436.1 protein_id:AAK70404.1 protein_id:BAB27484.1 protein_id:BAB29251.1 protein_id:BAB32156.1 protein_id:BAE35920.1 protein_id:EDL14556.1 OTTP:OTTMUSP00000068849 OTTT:OTTMUST00000127694 Reactome:R-MMU-156827 Reactome:R-MMU-156842 Reactome:R-MMU-156902 Reactome:R-MMU-1799339 Reactome:R-MMU-392499 Reactome:R-MMU-72613 Reactome:R-MMU-72689 Reactome:R-MMU-72706 Reactome:R-MMU-72737 Reactome:R-MMU-72764 Reactome:R-MMU-72766 Reactome:R-MMU-74160 Reactome:R-MMU-927802 Reactome:R-MMU-975956 Reactome:R-MMU-975957 UniParc:UPI00000227C3
definition	note : transcript_id=ENSMUST00000179954 protein_id : ENSMUSP00000137631 translation : MAPAKKGGEKKKGRSAINEVVTREYTINIHKRIHGVGFKKRAPRALKEIRKFAMKEMGTPDVRIDTRLNKAVWAKGIRNVPYRIRVRLSRKRNEDEDSPNKLYTLVTYVPVTTFKNLQTVNVDEN

name	Rpl31 (ENSMUSG00000073702) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000127695 Vega_transcript:Rpl31-006 Uniprot/SPTREMBL:A0A0A6YXL3 UCSC:uc007ate.2 EMBL:AC132571 GO:GO:0003735 GO:GO:0005925 GO:GO:0006412 GO:GO:0016020 GO:GO:0022625 GO:GO:0044822 GO:GO:0070062 MGI_trans_name:Rpl31-006 Vega_translation:179092 Vega_translation:OTTMUSP00000068850 goslim_goa:GO:0003674 goslim_goa:GO:0003723 goslim_goa:GO:0003735 goslim_goa:GO:0005198 goslim_goa:GO:0005575 goslim_goa:GO:0005576 goslim_goa:GO:0005622 goslim_goa:GO:0005623 goslim_goa:GO:0005737 goslim_goa:GO:0005829 goslim_goa:GO:0005840 goslim_goa:GO:0006412 goslim_goa:GO:0008150 goslim_goa:GO:0009058 goslim_goa:GO:0034641 goslim_goa:GO:0043226 OTTP:OTTMUSP00000068850 OTTT:OTTMUST00000127695 UniParc:UPI00053BD6AB
definition	note : transcript_id=ENSMUST00000195123 protein_id : ENSMUSP00000142039 translation : MAPAKKGGEKKKGRSAINEVVTREYTINIHKRIHGVGFKKRAPRALKEIRKFAMKEMGTPDVRIDTRLNKAVWAKGIRIPQTSSTRW

name	Tbc1d8 (ENSMUSG00000003134) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	CCDS:CCDS14905.1 Uniprot/SWISSPROT:Q9Z1A9 RefSeq_peptide:NP_061245 RefSeq_mRNA:NM_018775.4 RefSeq_peptide_predicted:XP_011236860.1 Vega_transcript:OTTMUST00000127697 Vega_transcript:Tbc1d8-001 UCSC:uc007atg.3 Fantom:9230101C04 Fantom:A330080E24 Fantom:C630001K10 EMBL:AK138630 EMBL:AK141520 EMBL:AK162371 EMBL:BC005421 EMBL:BC065081 EMBL:CH466536 EMBL:U88873 GO:GO:0003674 GO:GO:0005096 GO:GO:0005575 GO:GO:0008150 GO:GO:0043547 MGI_trans_name:Tbc1d8-001 Vega_translation:179093 Vega_translation:OTTMUSP00000068851 goslim_goa:GO:0003674 goslim_goa:GO:0005575 goslim_goa:GO:0008150 goslim_goa:GO:0030234 protein_id:AAD00658.1 protein_id:AAH05421.2 protein_id:AAH65081.1 protein_id:BAE23728.1 protein_id:BAE24715.1 protein_id:BAE36878.1 protein_id:EDL14558.1 OTTP:OTTMUSP00000068851 OTTT:OTTMUST00000127697 UniParc:UPI0000232A02
definition	note : transcript_id=ENSMUST00000054462 protein_id : ENSMUSP00000049967 translation : MWLKPEEVLLKNALKLWVTQKSSCYFVLQRRRGHGEGGGRLTGRLVGALDAVLDSSARVAPFRILLQVPGSQVYSPIACGATLEEINRHWDWLEQNLLHTLSVFDNKDDIASFVKGKVKALIAEETSSRLAEQEEEPEKFREALVKFEARFNFPEAEKLVTYYSCCCWKGRVPRQGWLYLSINHLCFYSFFLGKELKLVIPWVDIQKLERTSNVFLTDTIRITTQNKERDFSTFLNLDEVFKIMEQLADVTLRRLLDNEVFDLDPDLQEPSQITKRDLEARAQNEFFRAFFRLPREEKLHAVADCSLWTPFSRCHTAGRIFSSDSYICFASREDGCCNVVLPLREVVSIEKMEDTSLLPNPIIVSIRSKMAFQFIELKDRENLVEGLLLRLKQVHANHPVHYETSPSDDDMASPVFYSASICTDKFGDLEMVASQSSEEREEKRPLPHPEPLTAVFQQSGSQSPDSRLSREQIKISLWNDHFVEYGRTVCMFRTEKIRKLVAMGIPESLRGRLWLLFSDAVTDLASHPGYYGNLVEQSLGRCCLVTEEIERDLHRSLPEHPAFQNETGIAALRRVLTAYAHRNPKIGYCQSMNILTSVLLLYAKEEEAFWLLVAVCERMLPDYFNHRVIGAQVDQSVFEELIKEQLPELAEHMSDLSALASISLSWFLTLFLSIMPLESAVHVVDCFFYDGIKAIFQLGLAVLEANAEELCSSKDDGQALMVLSRFLDHIKNEDSPGPPIGSHHAFFSDDQEPYPVTDIADLIRDSYEKFGNQSVEQIEHLRCKHRIRVLQGHEDTTKQNVLRVVIPEVSILPEDLEELYDLFKRAHMMSCYWEHHRPMALRHDPSRPYAEQYRIDARQFAHLFQLVSPWTCGVHTEILAERLFRLLDDNMDQLIEFKAFTSCLDIMYNGEMNEKIKLLYRLHIPPALTENDRDSQSPLKNPLLSTSRPLVLGKPNGDTIDYQKQLKQMIKDLAKEKDKMEKELPKMSQREFIQFCKTLYSMFHEDPEENDLYQAIATVTTLLLQIGEVGQRGSSSGSCSQECEEPQASAPPEQDSVFAEAGKSPQAFPETEGDWTVSLEHILASLLTEQSLVNFFEKPLNIKSKLENAKLNQYSLKVLEMSHPPQAELKLNDL

name	Tbc1d8 (ENSMUSG00000003134) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000128340 Vega_transcript:Tbc1d8-006 Uniprot/SPTREMBL:A0A0A6YVT5 GO:GO:0003674 GO:GO:0005575 GO:GO:0008150 MGI_trans_name:Tbc1d8-006 Vega_translation:179094 Vega_translation:OTTMUSP00000069053 goslim_goa:GO:0003674 goslim_goa:GO:0005575 goslim_goa:GO:0008150 OTTP:OTTMUSP00000069053 OTTT:OTTMUST00000128340 UniParc:UPI00053BD728
definition	codon_start : 2 note : transcript_id=ENSMUST00000192099 protein_id : ENSMUSP00000141257 translation : XNAKLNQYSLKVLEMSHPPQAELKLNDL

name
type	misc_feature
link
xref
definition	note : contig AC132571.2 1..155527(-1)

name	Rpl31 (ENSMUSG00000073702)
type	misc_RNA
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000127696 Vega_transcript:OTTMUST00000127696 MGI_trans_name:Rpl31-004 OTTT:OTTMUST00000127696
definition	note : retained_intron note : transcript_id=ENSMUST00000191855

Polymorphisms
Exon
Sequence

Polymorphisms Report

Target Strain	MSMv4 JF1v3 KJRv1 SWNv1 CHDv1 NJLv1 BLG2v1 HMIv1 BFMv1 PGN2v1

Gene Symbol (Gene ID)	Rpl31 (ENSMUSG00000073702)
Transcript ID	ENSMUST00000194746

Reports
substitution
cSNPs	2
Insertion	14
Deletion	18
SNPs	-1kb 39363016(c.-5133A>G), 39363038(c.-5111A>G), 39363402(c.-4747C>T), 39363586(c.-4563T>C), 39363593(c.-4556T>G), 39363605(c.-4544C>T), 39363876(c.-4273G>C), 39363895(c.-4254A>G), 39364060(c.-4089A>G), 39364277(c.-3872T>A), 39364344(c.-3805A>G), 39364446(c.-3703C>G), 39364475(c.-3674T>C), 39364519(c.-3630A>G), 39364627(c.-3522A>C), 39364747(c.-3402T>C), 39364774(c.-3375A>G), 39364850(c.-3299C>A), 39365071(c.-3078C>T), 39365083(c.-3066A>G), 39365121(c.-3028A>G), 39365130(c.-3019A>G), 39365133(c.-3016C>T), 39365251(c.-2898G>A), 39365782(c.-2367C>T), 39365830(c.-2319A>G), 39366026(c.-2123T>C), 39366563(c.-1586T>C), 39366743(c.-1406A>C), 39366789(c.-1360C>T), 39366821(c.-1328T>C), 39366871(c.-1278A>G), 39366890(c.-1259G>A), 39367312(c.-837C>T), 39367583(c.-566A>G), 39367689(c.-460T>A), 39367739(c.-410T>C), 39367754(c.-395T>C), 39367801(c.-348C>T), 5'UTR CDS 39370999(c.279T>C), 39371092(c.372G>A), 3'UTR 39371341(c.231G>A), INTRON 39368061(c.1-88C>A), 39368141(c.1-8G>A), 39368349(c.107+94T>A), 39368352(c.107+97A>T), 39368373(c.107+118C>T), 39368377(c.107+122G>A), 39368635(c.107+380A>G), 39368752(c.107+497G>T), 39368829(c.107+574C>G), 39369013(c.107+758G>T), 39369182(c.108-832C>T), 39369239(c.108-775T>C), 39369440(c.108-574T>C), 39369528(c.108-486C>G), 39369530(c.108-484A>G), 39369560(c.108-454G>A), 39369736(c.108-278A>G), 39370148(c.233+9G>A), 39370301(c.233+162A>G), 39370400(c.233+261A>T), 39370498(c.233+359A>G), 39370575(c.234-379G>T), +1kb 39371437(c.327A>G), 39371487(c.377A>C), 39371579(c.469A>C), 39371750(c.640G>T), 39371855(c.745A>T), 39372343(c.1233C>T), 39372389(c.1279C>T), 39372483(c.1373A>G), 39372598(c.1488G>A), 39373015(c.1905G>A), 39373103(c.1993A>G), 39373295(c.2185G>A), 39373317(c.2207G>A), 39373342(c.2232A>T), 39373602(c.2492T>C), 39373605(c.2495C>T), 39373635(c.2525T>A), 39373717(c.2607G>A), 39373811(c.2701G>A), 39375502(c.4392A>G), 39375507(c.4397A>G), 39375619(c.4509T>C), 39375636(c.4526T>C), 39375751(c.4641A>T), 39375849(c.4739G>A), 39375932(c.4822T>C), 39375973(c.4863T>C), 39376111(c.5001C>G), 39376133(c.5023A>C),
Insertions	-1kb 39364124 (c.-4025_-4024insCATT), 39366517 (c.-1632_-1631insT), 5'UTR CDS 3'UTR INTRON 39368732 (c.107+478_107+479dupTT), 39370201 (c.233+62_233+63insGGTGC), 39370378 (c.233+241_233+242insCCTCT), +1kb 39372277 (c.1167_1168insT), 39373376 (c.2266dupT), 39373447 (c.2337_2338insTCCT), 39374293 (c.3183dupA), 39374510 (c.3397_3400dupTACC), 39374746 (c.3636dupG), 39374811 (c.3701_3702insTTTAA), 39375507 (c.4397_4398insCT), 39375973 (c.4863_*4864insA),
Deletions	-1kb 39363904 (c.-4244_-4241delTGGT), 39367244 (c.-904_-903delAG), 5'UTR CDS 3'UTR INTRON 39368406 (c.107+152delG), 39368474 (c.107+220delT), 39368607 (c.107+353delT), 39369045 (c.107+800delC), 39369263 (c.108-746delT), 39369593 (c.108-417_108-415delTTT), 39369979 (c.108-26delT), 39370469 (c.233+331_233+336delTAAGAT), +1kb 39373930 (c.2821delT), 39374260 (c.3151_3158delCATACACA), 39374554 (c.3445_3446delTG), 39374624 (c.3515_3516delTT), 39374875 (c.3766_3773delTTAATTAA), 39375162 (c.4053_4054delAG), 39375675 (c.4566_4570delAAAAA), 39375796 (c.4687delA),
coding sequence substitutions
premature termination by the nucleotide substitution	0
synonymous num	2
non-synonymous num	0
synonymous substitutions	39370999 (p.Asn93Asn), 39371092 (p.Glu124Glu),
non-synonymous substitutions
B6 transcript (ENSMUST00000194746)	MAPAKKGGEKKKGRSAINEVVTREYTINIHKRIHGVGFKKRAPRALKEIRKFAMKEMGTP DVRIDTRLNKAVWAKGIRNVPYRIRVRLSRKRNEDEDSPNKLYTLVTYVPVTTFKSKYPS VPQELLYVR*
MSMv4 transcript	MAPAKKGGEKKKGRSAINEVVTREYTINIHKRIHGVGFKKRAPRALKEIRKFAMKEMGTP DVRIDTRLNKAVWAKGIRNVPYRIRVRLSRKRNEDEDSPNKLYTLVTYVPVTTFKSKYPS VPQELLYVR*
homology	100.00 (130 / 130)

Exon Detail Report

Target Strain	MSMv4 JF1v3 KJRv1 SWNv1 CHDv1 NJLv1 BLG2v1 HMIv1 BFMv1 PGN2v1

Gene Symbol (Gene ID)	Rpl31 (ENSMUSG00000073702)
Transcript ID	ENSMUST00000194746

No.	Exon / Intron	Start	End	Start Phase	End Phase	Length	Sequence
	5' upstream sequence						..........TCTGTGTAGTCCATCCTTAATTTGGCATCCTCTTGCTCTGCCTCCTGAAT GCATCGCTCCAGACTTCCTTTTAAATTATTTTTGAGTGGCTCTGCTTGGGAGATTGCGTT GCAATTTTCTGAGCTCAACCCCAGTACCAATCAGCACTCCCATAGAACCCCTTCTGGTTT GGATTCTCTAAGAACTAGAACCGAGCCTGTCTGCTCCTTTCCTCCTAGCCCCACTGAGAA GTCATCAGATATTGTCAAGCGTGTTTAGCCCACTACAGTCAAGGATATCTCGAACTCCTG ATCACCTAACTCAACCCACAAAGTTCTGGGATCACAGGTGTGCACCACCACACGTGGCTG TGGACACTATTTTCTTAAGAGAGAGAGAGCAGTTGCCTGTCCACCCCAAGTCTGACCTTT GGGGAATCCAAAGGCCCCAGCATCTCTTAGCCAAAGGAGGCAGAGACATAGGTTCCTTGT AAGATCGTGGAGTTTCTGCCTGCCTGTCTTCTTGCCTGTGAGATCCTGAAACTTGCTCAT TGCTGAAACTCCAATAGACAGGCTATTCGGACATGTTTAGATTCGGAGATCTATTTTCTA CGGACGTGCCTGGCATTTCCGTGGGCATTTTCGACTTGGAAAATAAATTCTTTTGTTGTC GTCTCGGTCATTCCGGGGACCTTCCGCCAAGCACAGTATCTAATAGATTAAACAAGCGTA GAGTGAGTGAGCGAGTGCACCCGAAAAACTGGAGTATCTTCCCTCCCGGCCGGGCGTTCC GAATCCGGGTTCGGGTTGGGATTTAAATCCCATCCCGCACCACCACTGCTCAAGGCAGAT TGCAAGAAGACTGACAAGATCGACCCCGCCCCGGGCCCGCCCTGGGCCCGCCCCATGCCG CTCGCTCCGCCCCTGACGCGCGCTGTATTTACGTCCCAGCCTAACTCCTAACTTCCCTCG CCACACCTCTTCCTCCTCGCCTCCCCGTGACCCGGAAGTTGTACGGCTAC
1	EXON 1	39367878	39367934	-	-	57	GCGACTTTCCCTCCCACAAACCCTCGCGCCCTTCCTTTCCTACTTGGGCCCGGCAGA
	INTRON 1 - 2	39367935	39368148			214	GTGAGTATGGCTGCGGGGTCGCGGC..........CTCCCTCCCTGTCGCCTACGTCTAG
2	EXON 2	39368149	39368255	-	2	107	ATGGCTCCCGCAAAGAAGGGTGGCGAGAAGAAGAAGGGCCGTTCTGCCATCAACGAGGTG GTGACCCGAGAATACACCATCAACATTCACAAGCGCATCCATGGAGT
	INTRON 2 - 3	39368256	39370013			1758	GTGAGTACCGGGCGGGCGGTGTGGC..........AATGTGCTTGTGTTCTGAACCTTAG
3	EXON 3	39370014	39370139	2	2	126	GGGCTTCAAGAAGCGTGCTCCTCGGGCACTCAAAGAAATTCGGAAGTTTGCCATGAAGGA AATGGGGACACCAGATGTGCGCATTGACACCAGGCTCAATAAAGCCGTCTGGGCCAAGGG AATAAG
	INTRON 3 - 4	39370140	39370953			814	GTACTGAAATTACTTGGTGCAGTGA..........GACCTTAGCAACACATTTTTATTAG
4	EXON 4	39370954	39371366	2	-	413	GAACGTTCCATATCGCATCCGAGTACGCTTGTCCAGAAAACGTAACGAGGATGAGGATTC CCCAAACAAGCTCTACACGCTGGTAACTTACGTGCCTGTTACCACATTCAAAAGTAAGTA TCCCAGCGTTCCGCAGGAATTATTGTATGTGAGATGATGTGTGTCTTAACTATGTTCAGT GAAGAGGTAAGCAGCAGGTTAAATTATCAGATGTTCCTTAAAAACTAACTGGCTGGGGGA AGATAGTACAGAGGTTGCTGGGAAGGGCGGCACAGGCCATGGGTTGTGCAGTGGCCTCCA GCTGGGGCAGGATGCGTGGGTGCTGACTGGCTGTTACTCTCCTTCCAGATCTACAGACGG TCAACGTGGATGAGAACTAACCTGCTCATGTCAAATAAAGTTGCAGAACTGCC
	3' upstream sequence						TTCAGGGTTTGGTTTTCCTTTCTGTTGTCTGCCTCATGGGTGGAATTTTTGGGTCTACAG GGTGTTGGAAGTTAATCTGAGAATCTCTGTTCTGGGTACATGGGAAATTAGAAATACGTG CAACATTCTTTTCACAGAAGTCACTTTATTAGGATTGTGGATTTGGGTTGGTTTTGAAAC AGGGTTTCTTGTGGCACTGCTTGTTCTATAGACTAGGGTGGCCTTGAACTCAGAAATCCA CCTGCCTTTTCCTCCCTAGTATTGGCAATTAAATGCCCAGCTTGTTTGTAAGCTCTCATT TTCAGTTCCAGGTTTATGTGTGAGCCTAAGATTAGGTAAAGATTGAGGTTATAACTTAAA CGTACTGAATTAACTTATGTTGTTTGGGTCCCAGGAATTGGACCTGGGACATCAACTCTG CCTTTCCAGCCATCTTTGCCAACCAGTAGCTCATCTCTGGGATGTGTCTGCCCTCAAAAT GACATTTTTAAAAAGTCAGTACAAAAGAACGATTTTTATTAAAAACCTTGAGGACAAACA TTAAAGGCATGGTTTGAACATGTTTTTGTAAGGGCATATAAAGTGAATACGAGATATATT AAATGGTTTCAATTACCAGCATTGAAACAAAATTAGTGCAAAAAAAAGCCAAATACAGTT GTACAGGCAATGGTTCTGGGATCTCTTGTTTCTGACCAGTGGAAACATGAGCCTGGGGTT GGTGTCTCTTAGTTACGGTGGCATCTTTTTCTTCATCAAAGGGCAGACTCACTATCAGGA TCACAACAGAAACACTGGTCTCAGCAAAGTTGATAGTCACAGTGTATGTAAACAGGGCGT CCCACCACTCACCTGTCCTCTTAATAAATAGAAATGCGTCAGACCTGCAGCTGTGACTGA GGTGGTGGAGCTCCCTGGTTGTAGGCTGACAGCTCTTGCTTTGGTGTGGTCGGCTCCAGT GTGTTCTCCAGCAGCTTAGGGCCTACAGGTCATTGAGCTT..........

Sequence Detail Report

Gene Symbol (Gene ID)	Rpl31 (ENSMUSG00000073702)
Transcript ID	ENSMUST00000194746

		SNP Information
Strain :
Sequence Retrieve :
Exon translate : CDS Start ( 1 ) - End ( 130 ) -
Strand :	forward reverse
Show sequence :	nucleotide amino acid
Color information