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Target CDS Information

Gene Symbol (Gene ID) Tpp2 (ENSMUSG00000041763)
Cross Reference
EMBL AC111064, AC125134
GO GO:0004252, GO:0005634, GO:0005654, ...show all
goslim_goa GO:0003674, GO:0005575, GO:0005622, ...show all
MGI_trans_name Tpp2-006
OTTP OTTMUSP00000066808
OTTT OTTMUST00000120878
UniParc UPI0004621088
Uniprot/SPTREMBL A0A087WQR6
Vega_transcript OTTMUST00000120878, Tpp2-006
Vega_translation 179168, OTTMUSP00000066808
Definition protein_id:ENSMUSP00000140313
translation:
PFFVTSLPDDKIPKGAGPGCYLAGSLTLSKTELGKKAGQSAAKRQGKFKKDVIPVHYYLI
PPPTKIKNGSKDKEKDSEKEKDLKEEFTEALRDLKIQWMTKLDSTDIYNELKETYPAYLP
LYVARLHQLDAEKERMKRLNEIVDAANAVISHIDQTALAVYIAMKTDPRPDAATIKNDMD
KQKSTLIDALCRKGCALADHLLHTQPHDGAAAGDAEAKEEEGESTMESLSETYWETTKWT
DLFDTKVLIFAYKHALVNKMYGRGLKFATKLVEEKPTKENWKNCIQVSNYTVYYFHTV

Chromosome 1
Length
Position(start - end)
18191
43983285 - 44001477
Orient to Chromosome plus
Link Location : (1:43983285-44001477)
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Detail Map


 

Report

Polymorphisms Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Tpp2 (ENSMUSG00000041763)
Transcript ID ENSMUST00000190207
Reports
substitution
cSNPs0
Insertion10
Deletion10
SNPs
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
Insertions
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
Deletions
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
coding sequence substitutions
premature termination by the nucleotide substitution0
synonymous num0
non-synonymous num0
synonymous substitutions
non-synonymous substitutions
B6 transcript
(ENSMUST00000190207)
PFFVTSLPDDKIPKGAGPGCYLAGSLTLSKTELGKKAGQSAAKRQGKFKKDVIPVHYYLI
PPPTKIKNGSKDKEKDSEKEKDLKEEFTEALRDLKIQWMTKLDSTDIYNELKETYPAYLP
LYVARLHQLDAEKERMKRLNEIVDAANAVISHIDQTALAVYIAMKTDPRPDAATIKNDMD
KQKSTLIDALCRKGCALADHLLHTQPHDGAAAGDAEAKEEEGESTMESLSETYWETTKWT
DLFDTKVLIFAYKHALVNKMYGRGLKFATKLVEEKPTKENWKNCIQVSNYTVYYFHTV*
MSMv4 transcript
PFFVTSLPDDKIPKGAGPGCYLAGSLTLSKTELGKKAGQSAAKRQGKFKKDVIPVHYYLI
PPPTKIKNGSKDKEKDSEKEKDLKEEFTEALRDLKIQWMTKLDSTDIYNELKETYPAYLP
LYVARLHQLDAEKERMKRLNEIVDAANAVISHIDQTALAVYIAMKTDPRPDAATIKNDMD
KQKSTLIDALCRKGCALADHLLHTQPHDGAAAGDAEAKEEEGESTMESLSETYWETTKWT
DLFDTKVLIFAYKHALVNKMYGRGLKFATKLVEEKPTKENWKNCIQVSNYTVYYFHTV*
homology100.00 (299 / 299)

Exon Detail Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Tpp2 (ENSMUSG00000041763)
Transcript ID ENSMUST00000190207
No. Exon / Intron Start End Start Phase End Phase Length Sequence
5' upstream sequence
..........TCTGAAACCGTACTGAGCATTGACTGCGTGCTCTGGACTTTGTTTCCCAC
TGATACCAAAGGACATGGAACTACTTGGCAATTTTGTCTCTGGTTAAAATTGTATTTGAA
GAAATAGGAGATATTTTTCTGAAATGCTCATGATTTTTTGCTGAATAATTAATTAAGTAA
TAAAATAATAAAAATTGTTTATGGAAGCTTTTGCATTTAAGGAATGGTCCAGTTTTCCCG
TCAAGCAAGCAGCAATCTCATCACTATAGTCTGGAATGTTACTTGAGTTACACTTCACAT
TGGCTCAAAAGACATTGCTTCTGCAAAATACTAACAGTATCCCCATTCAGTGAGCATTTT
AGCCGAGAGGGATGTAGTAGCTTTACAATCCTTGATCTCTACTGGCTCCTTGTTTTCCCT
GCTTGTCATAAAGGGATGTGACACTTCACAGTTAAAACGTAACGTTTTACAGAAGTCACA
CATGTGCATACACATGAATGTTTATTTTAGATAATATACAAATCTAATTTTGACTTTTTT
GACTACCACTTCATGTTTCTTACAACCTATAAACAAAACTATACTTGCTTTTCTTATGTA
TAACACTGATTGTGTGAATATGTTGATACGCTTGGGGTCAGGCGAGCCACTTGATACTTC
AAATTCTGCCCCGCTCACTAGCACCTTAGATACTTTGAGTATAGATGTCTCATACCTTGT
ACACTCTGTAAATGGAACTGTGTCTTTTATCCTTTTACTGAGCTGAACTTACTTTTTCCA
AATGTTTTCTTTTTTAGTATTCTCTGAAATTGGAGAAAGGAGATTATACAATTCGATTAC
AGATTCGTCATGAGCAAATCAGTGATTTGGATCGTCTCAAAGATCTTCCGTTTATTGTTT
CACATAGGTTGTCTAATACCTTGAGCTTAGATATTCATGAAAATCATAGCCTTGCACTTC
TAGGAAAGAAGAAATCAAGCAGCTTAACATTACCACCCAAATACAATCAG
1 EXON 1 43983285 43983316 - 2 32
CCATTCTTTGTTACTTCCTTACCTGATGATAA
INTRON 1 - 2 43983317 43983513 197
GTAAGTGCTGATGTTGATGTATGTT..........TTTCCCCTTTTAATTCTCTCATTAG
2 EXON 2 43983514 43983592 2 0 79
AATACCTAAGGGGGCAGGACCCGGATGCTACCTTGCAGGCTCCTTGACATTGTCAAAGAC
TGAGCTTGGAAAGAAAGCT
INTRON 2 - 3 43983593 43985415 1823
GTAAGTACTAGTGTTTTACACTGAA..........TACAGAATGTCGTTCTAACTCCCAG
3 EXON 3 43985416 43985454 0 0 39
GGGCAGTCTGCAGCAAAACGACAAGGAAAATTTAAAAAG
INTRON 3 - 4 43985455 43990510 5056
GTACTGATTGTCAGTTCTTAAAAAC..........CTAAAACTTTCTTTCACCTTCCTAG
4 EXON 4 43990511 43990662 0 2 152
GATGTGATCCCTGTTCATTACTATCTCATACCTCCACCAACAAAGATTAAGAATGGCAGC
AAAGATAAAGAAAAGGATTCAGAAAAAGAGAAAGACTTGAAAGAAGAGTTTACTGAAGCA
TTACGCGATCTCAAAATTCAGTGGATGACCAA
INTRON 4 - 5 43990663 43991262 600
GTAGGTCATTTTAGTGGATTCCAAG..........TTACTAATAAGACTCTTTTACATAG
5 EXON 5 43991263 43991359 2 0 97
GCTTGATTCTACTGACATTTACAATGAATTGAAAGAAACATATCCTGCTTACCTTCCTTT
GTATGTTGCACGTCTTCATCAACTGGATGCTGAAAAG
INTRON 5 - 6 43991360 43992263 904
GTTAGATATAGTAGTTTTTTACTAA..........ATACACTTCTTTTTTTTCTACCCAG
6 EXON 6 43992264 43992394 0 2 131
GAACGAATGAAAAGACTTAATGAAATTGTTGATGCTGCCAATGCTGTTATTTCTCACATC
GATCAAACCGCTCTTGCAGTTTACATTGCAATGAAGACTGACCCCAGGCCTGATGCAGCT
ACTATAAAAAA
INTRON 6 - 7 43992395 43999627 7233
GTACCTAACCAGTAAATAATCTTTC..........AAAAAAATTTTTATTTGCTCTCCAG
7 EXON 7 43999628 43999835 2 0 208
TGATATGGACAAGCAGAAATCCACCCTGATAGATGCCCTCTGCAGGAAAGGATGTGCCCT
GGCAGATCACCTTCTTCATACACAGCCTCACGACGGGGCAGCAGCTGGAGATGCTGAAGC
AAAGGAAGAAGAAGGAGAAAGTACCATGGAATCTCTATCGGAAACCTATTGGGAAACTAC
AAAGTGGACAGATCTTTTTGACACTAAG
INTRON 7 - 8 43999836 44001318 1483
GTAACTCACCCTTTTGCTATTGGTC..........AAATAATCTCTATTTTATTTTATAG
8 EXON 8 44001319 44003000 0 - 1682
GTTTTGATATTTGCATACAAGCATGCATTAGTAAATAAGATGTATGGGAGAGGCCTTAAG
TTTGCAACCAAACTCGTAGAAGAAAAACCAACAAAAGAAAACTGGAAAAATTGTATTCAA
GTAAGTAATTATACTGTATATTACTTCCATACTGTGTAGTGACTAGAACACTGGGGGGGG
GGGGGGGGCCGGGGGGACCTGTGTGCATTATAAAAAAAATACTTATTCTACTGTGGTCTG
TTGTTACCATTACTAAACCAGTTTCAAAATTACTTTCTGTAGTTAGATGATGTTTTCTCT
TTTGAAGGAAGAAGCATTCCTTCTTAATGTATGTTGCATTGGTTCTAAAATCATTGAATT
TGTGGAGTTAATATTTTCTTTTTTGTCTGAGATGATTTCTAACTTTATTAATTTACCATA
TATTGCATATGCAAAGGAAAACTAGTTGGATCTTTTTCTGTGAGTTAGCTTGAGATATGA
AGGAAATTATTTTAATGCCATCTTGTTTTCTGTCTATGTTCATCACTCAGTACAAATGGT
AAGACAGTTTAAGTCCTTTGGGTCTTGATTAGATTAAAGAACCTCTTTCTGGAGTTTGTG
TCCTATGAAAAAGATTGTGTTTTGTTAGGAAGGGTTAGGAAGGATATTCAGTGGGTAGAT
ATACTAATGAATGATAGCCTAATAGAAGGAAAATTTATGTTCATTGTGACTGTTACTATT
AAATTATTCTGAAATTTGGGTTTGGGACCTGTCACGTTCTTTACTAACTCTTTCTTTCAT
TATAGCTCATGAAATTACTTGGATGGACCCACTGTGCATCTTTTACTGAAAACTGGCTCC
CCATCATGTATCCTCCTGATTATTGTGTATTCTAAAATAAGAACCAAAACTTTACATTTC
AAAACAGAAAATTTTATAGTGAATGGATATATGAAGAATTGTGTGGCATTTTTAGTCTGA
CTAATGCATGTTTTCATCTACCATTCAATACTGATCATTAAAACTATATGTATTTATCAG
AGAACTCAGTGGCGTGTGGCTTAATACATGTAATACAGACCTCTGACATCATGCTGCTTT
CCTACTGCCTCCGACACTCGGCAAGTGGAGAGCACTCCCTGCCTGCCAGCCCCACCTGAG
TTGGATGCAGCTGCACACTGCATGAGAGGTTTTCATGTTTTAATTTTAGCTGTAAAATGT
CATCCTGTTTTTTATTTTATAAATCACAAAGGTTAAAACATGCTAAATTTTTCCAATTAT
ATAGAGGCCTTAAAAATGCTACATTAGGTGTAGCTAAATTATTTATTTGACTAAAAAATA
TGGGAACATAATTTCCAGACTTTTTTTCTAAAAATAAATTCAATTAGTGGGGATGGTGGG
GGGCATAAACAAATGGCAACTGGGAAAAGAAACATGTTAAGGAAATCTCCATAAGGAGTC
ATAACAAAAACAAGGTGTTTTTAGAGCACCCTCAATTACATAGCATCAGAATGAGTTAAA
ATTTCTTGTGTTGGTGACAGACAGCTGAATCTATCTGGTTTTGTAAAGAAATACACAGTA
TGTTTATAACATTGAAATCATGTAAAATACATGAATAAACGTGCAAAACCACAGGCACAG
TACACCATATGCACTCTGATACCTTATTTTTTTTTTATAAATAAAAGTAAATATTAAAGC
TA
3' upstream sequence
TTCACAATTGGTCTTAATTTTTCATAAAGTTTGGGGTTAGAACACAGACTTAATTTATTA
CATCTGTAGACCAAAAAGTGAGGTGATTTATTTTATAATGTTTCCTATGGGTTTGCAGTT
ATTTGAATATATTTCCAGTGCTCAACATGTGGTTAAGTCTTATATATGTTTAATTTGTGT
GTGTGTGTGTTTTTTTGTGAGATCTTTGTTTCTTCATTTACTGCTATAAAAGATCTAGTT
AATCTTGTCATTTGTAACTTTTTTTAATTAGAGCTTTATGAAAAATACAAATATGCTTTA
AAATGTTTTGCATGCAGTTTTTGCAGGATCTAGAGTCTTAACATCCTCCTGTGGATGCTA
GCTGAGTGCATGAGCTCTCATATGTGTTTTTACCTGTACACATACAGGCACATAATCTAG
TCTTAGATCAGAAAGATTATAGCAACTTCCAAAGATCACTTCAGACCAATTACTAATTTC
AGAATCTGTTTTACCAGCCAAGTCTTGCCCCTTCATCTAAAGTACCTCAGCGAGGGTCAG
TAAACTATGTCCATTGAGCCATATGTAGATAGTTTTATTGGTATAGTTCTGTAGTTGGGA
GAGACAGGGTGCTACCATGTATCATTTCCTGTCTGGATCATACAGTGCTTCTCGATAACA
GATGATTTCAAGTAAGCTCTACACTAGACCGTATCCTCAAACCAAAAAATTTGTAGAATG
ATGCATGGATGAGGTGGTGACAGAAAGTCATTGTATCCAAATGCCTACACTACTCACACT
GAAAACAACTGGAGAACTAGGGAAAGATACTTCCTAAAGAAACATTAGAGCTGCAGAGTA
TGCTTGGGATTGCTTCCTGAGGACATGTCCAGCTATAAGCAGTTTGTCATGGGATGTTCT
ACTCCTTAATACTGTTACCTACATCCTAGAATTACATATTCTTTATTTACCTTTGAAAAG
GCCAGTTCTACCTTAGACACACAAGACTCAATCTCCCTTG..........

Sequence Detail Report

Gene Symbol (Gene ID) Tpp2 (ENSMUSG00000041763)
Transcript ID ENSMUST00000190207
SNP Information
Strain :
Sequence Retrieve :
Exon translate :
CDS Start ( 1 ) - End ( 299 )
-
Strand : forward reverse
Show sequence : nucleotide amino acid
Color information