MoG+ -Mouse Genome database with high added value-

Target CDS Information

Gene Symbol (Gene ID)

Cox5b (ENSMUSG00000061518)

Cross Reference

CCDS	CCDS14886.1
EMBL	AC084389, AK008339, AK131673, ...show all
Fantom	1700000A03, 2010107H02, 6620403C02
GO	GO:0004129, GO:0005740, GO:1902600
goslim_goa	GO:0003674, GO:0005575, GO:0005622, ...show all
MGI_trans_name	Cox5b-001
OTTP	OTTMUSP00000068266
OTTT	OTTMUST00000126138
protein_id	AAH96048.1, AAH99474.1, BAB25614.1, ...show all
Reactome	R-MMU-1428517, R-MMU-1430728, R-MMU-163200, ...show all

RefSeq_mRNA	NM_009942.2
RefSeq_peptide	NP_034072
RefSeq_peptide_predicted	XP_006543036.1
UCSC	uc007aqw.1
UniParc	UPI0000020DD1
Uniprot/SPTREMBL	Q9D881
Vega_transcript	Cox5b-001, OTTMUST00000126138
Vega_translation	178992, OTTMUSP00000068266

Definition

protein_id:ENSMUSP00000141554
translation:

MASRLLRGVGALAAQALRAHGPRGAAVTRSMASGGGVPTDEEQATGLEREIMIAAQKGLD
PYNMLPPKAASGTKEDPNLVPSISNKRIVGCICEEDNCTVIWFWLHKGESQRCPNCGTHY
KLVPHQMAH

Chromosome

Length
Position(start - end)

1721
36691587 - 36693309

Orient to Chromosome

plus

Link

Location : (1:36691587-36693309)
/

Detail Map

name	Cox5b (ENSMUSG00000061518)
type	gene
link	VEGA Ensembl MGI
xref
definition	locus_tag : Cox5b note : cytochrome c oxidase subunit Vb [Source:MGI Symbol;Acc:MGI:88475]

name	Cox5b (ENSMUSG00000061518)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000193210

name	Cox5b (ENSMUSG00000061518)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000195151

name	Cox5b (ENSMUSG00000061518)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000081180

name	Cox5b (ENSMUSG00000061518) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	CCDS:CCDS14886.1 RefSeq_peptide:NP_034072 RefSeq_mRNA:NM_009942.2 RefSeq_peptide_predicted:XP_006543036.1 Vega_transcript:Cox5b-001 Vega_transcript:OTTMUST00000126138 Uniprot/SPTREMBL:Q9D881 UCSC:uc007aqw.1 Fantom:1700000A03 Fantom:2010107H02 Fantom:6620403C02 EMBL:AC084389 EMBL:AK008339 EMBL:AK131673 EMBL:AK135174 EMBL:AL589742 EMBL:BC096048 EMBL:BC099474 EMBL:CH466536 EMBL:CH466561 GO:GO:0004129 GO:GO:0005740 GO:GO:1902600 MGI_trans_name:Cox5b-001 Vega_translation:178992 Vega_translation:OTTMUSP00000068266 goslim_goa:GO:0003674 goslim_goa:GO:0005575 goslim_goa:GO:0005622 goslim_goa:GO:0005623 goslim_goa:GO:0005737 goslim_goa:GO:0005739 goslim_goa:GO:0006810 goslim_goa:GO:0008150 goslim_goa:GO:0016491 goslim_goa:GO:0022857 goslim_goa:GO:0043226 goslim_goa:GO:0055085 protein_id:AAH96048.1 protein_id:AAH99474.1 protein_id:BAB25614.1 protein_id:BAE20757.1 protein_id:BAE22451.1 protein_id:EDL14503.1 protein_id:EDL32647.1 OTTP:OTTMUSP00000068266 OTTT:OTTMUST00000126138 Reactome:R-MMU-1428517 Reactome:R-MMU-1430728 Reactome:R-MMU-163200 Reactome:R-MMU-212436 Reactome:R-MMU-3700989 Reactome:R-MMU-5628897 Reactome:R-MMU-611105 Reactome:R-MMU-74160 UniParc:UPI0000020DD1
definition	note : transcript_id=ENSMUST00000193210 protein_id : ENSMUSP00000141554 translation : MASRLLRGVGALAAQALRAHGPRGAAVTRSMASGGGVPTDEEQATGLEREIMIAAQKGLDPYNMLPPKAASGTKEDPNLVPSISNKRIVGCICEEDNCTVIWFWLHKGESQRCPNCGTHYKLVPHQMAH

name	Cox5b (ENSMUSG00000061518) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	Vega_transcript:Cox5b-004 Vega_transcript:OTTMUST00000126139 Uniprot/SPTREMBL:A0A0A6YVR0 UCSC:uc007aqw.1 GO:GO:0004129 GO:GO:0005740 GO:GO:1902600 MGI_trans_name:Cox5b-004 Vega_translation:178993 Vega_translation:OTTMUSP00000068267 goslim_goa:GO:0003674 goslim_goa:GO:0005575 goslim_goa:GO:0005622 goslim_goa:GO:0005623 goslim_goa:GO:0005737 goslim_goa:GO:0005739 goslim_goa:GO:0006810 goslim_goa:GO:0008150 goslim_goa:GO:0016491 goslim_goa:GO:0022857 goslim_goa:GO:0043226 goslim_goa:GO:0055085 OTTP:OTTMUSP00000068267 OTTT:OTTMUST00000126139 UniParc:UPI00053BD663
definition	codon_start : 2 note : transcript_id=ENSMUST00000195151 protein_id : ENSMUSP00000141224 translation : XVGALAAQALRAHGPRGAAVTRSMASGGGVPTDEEQATGLEREIMIAAQKGLVKRTTVLSSGFGCTKARVSDAPTVEPITSWCPTKWPTEPLCYLFRM

name	Cox5b (ENSMUSG00000061518) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	Vega_transcript:Cox5b-003 Vega_transcript:OTTMUST00000126143 Uniprot/SPTREMBL:F7C106 UCSC:uc007aqw.1 GO:GO:0004129 GO:GO:0005740 GO:GO:1902600 MGI_trans_name:Cox5b-003 Vega_translation:178994 Vega_translation:OTTMUSP00000068268 goslim_goa:GO:0003674 goslim_goa:GO:0005575 goslim_goa:GO:0005622 goslim_goa:GO:0005623 goslim_goa:GO:0005737 goslim_goa:GO:0005739 goslim_goa:GO:0006810 goslim_goa:GO:0008150 goslim_goa:GO:0016491 goslim_goa:GO:0022857 goslim_goa:GO:0043226 goslim_goa:GO:0055085 OTTP:OTTMUSP00000068268 OTTT:OTTMUST00000126143 UniParc:UPI00053BD6D7
definition	codon_start : 2 note : transcript_id=ENSMUST00000081180 protein_id : ENSMUSP00000079944 translation : XGGVPTDEEQATGLEREIMIAAQKGLSTLVSFRTHTICYLQRQLQAPRKTLI

name
type	misc_feature
link
xref
definition	note : contig AC084389.1 1..206297(-1)

name	Cox5b (ENSMUSG00000061518)
type	misc_RNA
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000126140 Vega_transcript:OTTMUST00000126140 MGI_trans_name:Cox5b-005 OTTT:OTTMUST00000126140
definition	note : retained_intron note : transcript_id=ENSMUST00000191790

name	Cox5b (ENSMUSG00000061518)
type	misc_RNA
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000126141 Vega_transcript:OTTMUST00000126141 MGI_trans_name:Cox5b-006 OTTT:OTTMUST00000126141
definition	note : retained_intron note : transcript_id=ENSMUST00000192859

name	Cox5b (ENSMUSG00000061518)
type	misc_RNA
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000126142 Vega_transcript:OTTMUST00000126142 MGI_trans_name:Cox5b-002 OTTT:OTTMUST00000126142
definition	note : processed_transcript note : transcript_id=ENSMUST00000193235

Polymorphisms
Exon
Sequence

Polymorphisms Report

Target Strain	MSMv4 JF1v3 KJRv1 SWNv1 CHDv1 NJLv1 BLG2v1 HMIv1 BFMv1 PGN2v1

Gene Symbol (Gene ID)	Cox5b (ENSMUSG00000061518)
Transcript ID	ENSMUST00000193210

Reports
substitution
cSNPs	1
Insertion	7
Deletion	9
SNPs	-1kb 36687611(c.-3976G>A), 36687692(c.-3895G>T), 36687846(c.-3741G>A), 36688177(c.-3410G>A), 36688207(c.-3380C>T), 36688677(c.-2910G>A), 36688757(c.-2830A>T), 36688933(c.-2654G>A), 36689118(c.-2469A>G), 36690107(c.-1480A>G), 36690594(c.-993T>A), 36690644(c.-943C>T), 36690709(c.-878G>A), 36690799(c.-788T>C), 36690809(c.-778T>C), 36691088(c.-499T>G), 36691090(c.-497T>G), 36691102(c.-485T>G), 36691227(c.-360A>G), 5'UTR CDS 36692486(c.213A>G), 3'UTR 36693362(c.53T>C), 36693462(c.153A>G), 36693681(c.372A>G), INTRON 36691705(c.103+16G>A), 36691840(c.103+151T>G), 36692040(c.104-171A>G), 36692073(c.104-138G>C), 36692124(c.104-87G>C), 36692165(c.104-46C>T), 36692178(c.104-33A>G), 36692180(c.104-31C>T), 36692182(c.104-29A>G), 36692188(c.104-23G>A), 36692287(c.177+3A>G), 36692336(c.177+52A>G), 36692576(c.277+26G>A), 36692659(c.277+109A>G), 36692960(c.278-237G>A), 36693064(c.278-133G>T), 36693119(c.278-78T>C), +1kb 36693735(c.426A>G), 36693798(c.489A>G), 36693955(c.646T>C), 36693968(c.659G>A), 36693983(c.674A>T), 36694158(c.849T>C), 36694246(c.937G>A), 36694721(c.1412T>C), 36694756(c.1447G>A), 36694833(c.1524C>G), 36694875(c.1566G>A), 36694883(c.1574T>C), 36694898(c.1589C>A), 36694932(c.1623A>G), 36694950(c.1641A>G), 36695111(c.1802G>A), 36695743(c.2434C>T), 36695776(c.2467C>T), 36695797(c.2488G>A), 36695813(c.2504C>T), 36695996(c.2687T>C), 36695998(c.2689G>A), 36696047(c.2738A>G), 36696080(c.2771A>T), 36696138(c.2829C>T), 36696191(c.2882C>T), 36696217(c.2908G>A), 36696266(c.2957T>C), 36696336(c.3027T>A), 36696370(c.3061A>G), 36696409(c.3100A>G), 36696469(c.3160G>T), 36696654(c.3345T>A), 36696665(c.3356T>C), 36696667(c.3358A>C), 36696971(c.3662T>C), 36696996(c.3687A>C), 36697024(c.3715A>G), 36697040(c.3731G>A), 36697046(c.3737A>C), 36697051(c.3742C>T), 36697082(c.3773A>G), 36697550(c.4241T>C), 36697566(c.4257A>G), 36698438(c.5129T>C), 36698574(c.5265C>T), 36698587(c.5278C>T),
Insertions	-1kb 36691091 (c.-496_-495insCCG), 36691096 (c.-491_-490insGC), 5'UTR CDS 3'UTR 36693413 (c.115dupT), INTRON +1kb 36695985 (c.2676_2677insT), 36696312 (c.3003_3004insT), 36696336 (c.3027_3028insCC), 36696692 (c.3383_*3384insAGG),
Deletions	-1kb 36686584 (c.-5002delG), 36688907 (c.-2679_-2678delAC), 36690844 (c.-742_-741delAC), 36691052 (c.-534_-530delAAACA), 5'UTR CDS 3'UTR INTRON +1kb 36695022 (c.1714delA), 36695833 (c.2525_2532delTATGTATA), 36696686 (c.3378delC), 36696874 (c.3566delG), 36697025 (c.3717_*3720delATGG),
coding sequence substitutions
premature termination by the nucleotide substitution	0
synonymous num	1
non-synonymous num	0
synonymous substitutions	36692486 (p.Ser71Ser),
non-synonymous substitutions
B6 transcript (ENSMUST00000193210)	MASRLLRGVGALAAQALRAHGPRGAAVTRSMASGGGVPTDEEQATGLEREIMIAAQKGLD PYNMLPPKAASGTKEDPNLVPSISNKRIVGCICEEDNCTVIWFWLHKGESQRCPNCGTHY KLVPHQMAH*
MSMv4 transcript	MASRLLRGVGALAAQALRAHGPRGAAVTRSMASGGGVPTDEEQATGLEREIMIAAQKGLD PYNMLPPKAASGTKEDPNLVPSISNKRIVGCICEEDNCTVIWFWLHKGESQRCPNCGTHY KLVPHQMAH*
homology	100.00 (130 / 130)

Exon Detail Report

Target Strain	MSMv4 JF1v3 KJRv1 SWNv1 CHDv1 NJLv1 BLG2v1 HMIv1 BFMv1 PGN2v1

Gene Symbol (Gene ID)	Cox5b (ENSMUSG00000061518)
Transcript ID	ENSMUST00000193210

No.	Exon / Intron	Start	End	Start Phase	End Phase	Length	Sequence
	5' upstream sequence						..........TGTCAGGCCTCTGCAAGGTACTTAAGATTTCATCACTGGGACGCAATTAG GGAAGCATAGATACTGTATGCAGCCATAGTGTTTCAGGAATGTTCCACAACGAGAATAAA ACGAAGAAGCCAGTGTTTGGAAATCTAGTGAACGCTCTGCCGTGAGTTGTTAGGCTTTAC CTGTGTGCAACACTGAGCAATGGAGGACGTTTTCTGTCTAAATTAGAGACTTCTGACCAC GGTGCCTATTGTCATTTCCAGTTGCATTATTAACTTTCTTTCTGTCCCTCCTCCTCCTAG TATCCTCATCGTGGTGGAGTGGCCACCAGGAGGTACCCTACATCTATGCCTCCAAAGCCC TTCTGCACCGCACCCCCCGCACCCCCCTCATCCTTGTCCCTGGGGCCAACACCATCACCT CCCATAACATTACTATAGGAGGAAAACTGAGGACGGTGCAACAGCTTTAATCCCAGCAGA GGTAACCAGATCTCTGTGAGCTTTAGACCACCCTGATCTACATAGGGAGTTAAAGGTCAG CCAGGCTACATAGTGATACCGTGCTTAAAAAACAAAACAAAACAGAGTGGAGGAGGGAAT TGAGGCTAAGACTGTGTGTGTGGGGGGGTGTACTGTCAATTTCTGACGGAGTGGGCCATT GCAACAATTTGGTAACAACTAAAGCTGTCTGCAGTCTCGAACCCGTGGCTAACAGGCATA ACAAACACAACAGGCTTCCTGAGCTCACGCCCAGGGTTGTATGATTCGTGGTGGAAGCCC TTGACTGCGGGAACTTCGGCTTCCACAGCACCTCCACTACAAGAACTACTATGTGGCTGG GACACTGGGCGCGAACACTCAAGCGGACAGGTCATGAACCCGAAAGCCGCTAGCTGTCAG GGTGACTGACGCCACGCCCCGGAGGCGGCGGGAGTCTGCGCGGCCCACGAAGAGGCAGAA CTGCGCATGTGCGGCGTCTACTTTTAGCGCTGCTTCGGCTGGTCGGGGCA
1	EXON 1	36691484	36691689	-	1	206	GGAAGCGGAAGACTGACCGGGCGTTGTTAGACTCCCACCAACGGAAGTCCCGCCCATCTT GCTCAGCCTGTTCCCGGAAGTGCATCTGCTTGTCTCGGGCGAGATGGCTTCAAGGTTACT TCGCGGAGTGGGCGCTTTGGCGGCGCAGGCCCTGAGGGCCCACGGCCCCCGTGGCGCGGC CGTGACCCGCTCCATGGCTTCTGGAG
	INTRON 1 - 2	36691690	36692210			521	GTACGTGACCAGCTGAGCGGGACAG..........CCATAGCTCATTTTTCTTCTTCTAG
2	EXON 2	36692211	36692284	1	0	74	GTGGTGTCCCCACTGATGAGGAGCAGGCTACTGGGCTGGAGAGGGAGATCATGATAGCAG CACAGAAGGGACTG
	INTRON 2 - 3	36692285	36692450			166	GTGAGGAGAAATGCTGTGTCCTCTG..........AATAGTCAACTCTTGTCTCTTTCAG
3	EXON 3	36692451	36692550	0	1	100	GACCCATACAATATGCTACCTCCAAAGGCAGCTTCGGGCACCAAGGAAGACCCTAATCTA GTCCCGTCCATCAGCAACAAGAGAATAGTGGGCTGCATCT
	INTRON 3 - 4	36692551	36693196			646	GTAAGCACTTTGTTTTTATTTTCTG..........ACTGTCAACCGTCTTTCCCTTTCAG
4	EXON 4	36693197	36693681	1	-	485	GTGAAGAGGACAACTGTACTGTCATCTGGTTTTGGCTGCACAAAGGCGAGAGTCAGCGAT GCCCCAACTGTGGAACCCATTACAAGCTGGTGCCCCACCAAATGGCCCACTGAGCCCCTG TGTTATCTTTTCAGAATGTAAAGAAAAACTTCTCTCTAATAAAGACTAGCCATTGCACTG GCTCCTCCCATAGCTGGCTAGTCTTATGTCTATAGTCTTTTTTTTTTTAATATATATATA TTGAGACCACCTATCTCTTAATACTGGTTTGGCATCCACTTAGAATGTAAAACCAGTATA GAATTGTTAGAATTTTATTTTTAAAAAATTTTAAACTTTTTGTTGTTGCTGTTATTTGTT TGCTTTTCGAGACAGGGTTTCTCTTTTCTCTGTGTAGCCTTGGCTGGCCTGGAACTCACT CTGTAGACCAGGCTTGCCTTGACTTCAGATTCTGAGTGCTGGGATTAAAAGTATCTGCCA CCACG
	3' upstream sequence						GCCTGGCTAAAAATTCTTTTAAATTTTAACTTTTATATAATGTAGAGGGGGCAGAAACCA AGGGGGATTGTTAGGGGCAAGAGCAGTGACAATATGCTGACCTTGCTCAGATCTTCGTGG TTCCGTTTTGCCCTGCTAATGACTGAATAACTGGGCCATATGCTACAGAGACACTAACCC TGACGCAGGACTTAGGGGAAGGACGTTACAGAGCTCCAGCCCACTCTGTCCTCCAGTGAG AACTGTCACTGTGATCTCTGCACCTGTCAGTGGCTCCCTTTAAAAGAGAGAATGAAGAAA GTGAGACGCACTGAGCTGGACCCGGTCATGGAAGTCCCAGTCACTTGAGAGACTGCCGTG AGACGATACCTGAGCCTGGGTGACCTAGACCTCACTCTATAAAATAACAGTGATGATTGG AGCTTAGTATTGGTGCCTAGGTATTTACTGAATTTTTATGTGTGAGGAGTTTTTCTCTGG AAATACTCACGGAAATATAAACTGGGGAGGGCAGCCACAGCTCATCTCAGCCAGCAAGTT TATGATTCATGTTGAAATTCTCAAAGCAGATCCCTATAAAGTGGAAATGCCTTCTCATTC TGTGTTGAAATTTGCCAGAGGTGACTTTGGTTACTATCTATTAAGCGGGTTCACTATACA TAATTTCCCGGTTGATTTCAGGGATGGAAAGTGGAGTGGCCCACCATCTTGGTGACCGGT TTGGAAGGTGTAGTGTAAGCCTTTGCTTCCACTCTTTCCTCTGAGTGATCATCTCTGCTT CCAAGCAGTCAGGCATCGATTGGCCACTTGAGGCCTTTGCTGTGGGAAGGGAGTCCCGTT GAGCTGTTAAATCTTCCTCTGCCAGCCGGGCGTGGTGGCGCACGCCTTTAATCCTAGCAC TTGGGAGGCAGAGGCAGGCGGATCTCTTGAGTTGGAGTCCAGCCTGGTCTACAAAGTTCC AGGACAGCCAGGGCTATACAGAGAAACCCTGTCTTGTAAA..........

Sequence Detail Report

Gene Symbol (Gene ID)	Cox5b (ENSMUSG00000061518)
Transcript ID	ENSMUST00000193210

		SNP Information
Strain :
Sequence Retrieve :
Exon translate : CDS Start ( 1 ) - End ( 130 ) -
Strand :	forward reverse
Show sequence :	nucleotide amino acid
Color information