MoG+ -Mouse Genome database with high added value-

Target CDS Information

Gene Symbol (Gene ID)

N4bp2l1 (ENSMUSG00000041132)

Cross Reference

MGI_trans_name	N4bp2l1-003
OTTP	OTTMUSP00000072391
OTTT	OTTMUST00000137446
UniParc	UPI0006454933
Vega_transcript	N4bp2l1-003, OTTMUST00000137446
Vega_translation	196429, OTTMUSP00000072391

Definition

protein_id:ENSMUSP00000144439
translation:

MEDSFLESFGRLSLQQRQQQPPPRPPPARGPPPRRHSFRKHLYLLRGLPGSGKTTLASCL
TLP

Chromosome

Length
Position(start - end)

1016
150593419 - 150594436

Orient to Chromosome

minus

Link

Location : (5:150593419-150594436)
/

Detail Map

name	N4bp2l1 (ENSMUSG00000041132)
type	gene
link	VEGA Ensembl MGI
xref
definition	locus_tag : N4bp2l1 note : NEDD4 binding protein 2-like 1 [Source:MGI Symbol;Acc:MGI:2140872]

name	N4bp2l1 (ENSMUSG00000041132)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000016279

name	N4bp2l1 (ENSMUSG00000041132)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000202279

name	N4bp2l1 (ENSMUSG00000041132)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000202291

name	N4bp2l1 (ENSMUSG00000041132)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000200840

name	N4bp2l1 (ENSMUSG00000041132)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000201319

name	N4bp2l1 (ENSMUSG00000041132) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	CCDS:CCDS19887.1 Uniprot/SWISSPROT:Q3V2Q8 RefSeq_peptide:NP_598659 RefSeq_mRNA:NM_133898.4 Vega_transcript:N4bp2l1-001 Vega_transcript:OTTMUST00000137442 UCSC:uc009auc.2 Fantom:1520402E19 Fantom:A330097D18 Fantom:B230342M21 EMBL:AK046116 EMBL:AK131647 EMBL:AK138666 EMBL:BC019754 GO:GO:0003674 GO:GO:0005575 GO:GO:0008150 MGI_trans_name:N4bp2l1-001 Vega_translation:196425 Vega_translation:OTTMUSP00000072387 goslim_goa:GO:0003674 goslim_goa:GO:0005575 goslim_goa:GO:0008150 protein_id:AAH19754.1 protein_id:BAC32606.1 protein_id:BAE20739.1 protein_id:BAE23739.1 OTTP:OTTMUSP00000072387 OTTT:OTTMUST00000137442 UniParc:UPI0000021463
definition	note : transcript_id=ENSMUST00000016279 protein_id : ENSMUSP00000016279 translation : MEDSFLESFGRLSLQQRQQQPPPRPPPARGPPPRRHSFRKHLYLLRGLPGSGKTTLARQLQHDYPRALIFSTDDFFFKEDGTYEFNPNLLEEAHEWNQRRARKAMRNGISPIIIDNTNLHAWEMKPYAVMALENNYEVIFREPDTRWKFNVQELARRNIHGVPKEKIQRMKERYEHNVTFHSVLHAEKPSRANRNQGRNSEPSSGSGYWNTYTELPNRRANGLYSNEGYRRGGHHQGY

name	N4bp2l1 (ENSMUSG00000041132) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	Vega_transcript:N4bp2l1-005 Vega_transcript:OTTMUST00000137444 MGI_trans_name:N4bp2l1-005 Vega_translation:196427 Vega_translation:OTTMUSP00000072389 OTTP:OTTMUSP00000072389 OTTT:OTTMUST00000137444 UniParc:UPI00064548B2
definition	note : transcript_id=ENSMUST00000202279 protein_id : ENSMUSP00000143792 translation : MEDSFLESFGRLSLQQRQQQPPPRPPPARGPPPRRHSFRKHLYLLRGLPGSGKTTLARYC

name	N4bp2l1 (ENSMUSG00000041132) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	Vega_transcript:N4bp2l1-003 Vega_transcript:OTTMUST00000137446 MGI_trans_name:N4bp2l1-003 Vega_translation:196429 Vega_translation:OTTMUSP00000072391 OTTP:OTTMUSP00000072391 OTTT:OTTMUST00000137446 UniParc:UPI0006454933
definition	note : transcript_id=ENSMUST00000200840 protein_id : ENSMUSP00000144439 translation : MEDSFLESFGRLSLQQRQQQPPPRPPPARGPPPRRHSFRKHLYLLRGLPGSGKTTLASCLTLP

name	N4bp2l1 (ENSMUSG00000041132) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	Vega_transcript:N4bp2l1-004 Vega_transcript:OTTMUST00000137447 MGI_trans_name:N4bp2l1-004 Vega_translation:196430 Vega_translation:OTTMUSP00000072392 OTTP:OTTMUSP00000072392 OTTT:OTTMUST00000137447 UniParc:UPI00064547E6
definition	note : transcript_id=ENSMUST00000201319 protein_id : ENSMUSP00000144635 translation : MEDSFLESFGRLSLQQRQQQPPPRPPPARGPPPRRHSFRKHLYLLRGLPGSGKTTLAR

name
type	STS
link
xref	UniSTS_NUM:207918 UniSTS:BE685977 WI_MRC-RH:1630508
definition	note : map_weight=1 standard_name : BE685977

name
type	misc_feature
link
xref
definition	note : contig AC158558.6 1..163452(-1)

name	N4bp2l1 (ENSMUSG00000041132)
type	misc_RNA
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000137448 Vega_transcript:OTTMUST00000137448 MGI_trans_name:N4bp2l1-006 OTTT:OTTMUST00000137448
definition	note : retained_intron note : transcript_id=ENSMUST00000200926

Polymorphisms
Exon
Sequence

Polymorphisms Report

Target Strain	MSMv4 JF1v3 KJRv1 SWNv1 CHDv1 NJLv1 BLG2v1 HMIv1 BFMv1 PGN2v1

Gene Symbol (Gene ID)	N4bp2l1 (ENSMUSG00000041132)
Transcript ID	ENSMUST00000200840

Reports
substitution
cSNPs	0
Insertion	8
Deletion	9
SNPs	+1kb 150594608(c.-172A>G), 150594621(c.-185G>A), 150594642(c.-206G>C), 150594893(c.-457A>G), 150594916(c.-480T>G), 150595026(c.-590T>C), 150595046(c.-610C>G), 150595394(c.-958G>C), 150595696(c.-1260C>A), 150595714(c.-1278G>A), 150595741(c.-1305A>G), 150595752(c.-1316G>A), 150595913(c.-1477C>A), 150596129(c.-1693C>T), 150596175(c.-1739A>G), 150596605(c.-2169T>C), 150596606(c.-2170T>C), 150596688(c.-2252A>G), 150596690(c.-2254G>A), 150596697(c.-2261T>C), 150596929(c.-2493C>T), 150596984(c.-2548G>A), 150596998(c.-2562G>A), 150597244(c.-2808G>C), 150597317(c.-2881T>C), 150597325(c.-2889T>C), 150597338(c.-2902A>T), 150597391(c.-2955T>C), 150597561(c.-3125T>C), 150597633(c.-3197G>A), 150597686(c.-3250A>G), 150597742(c.-3306A>C), 150597909(c.-3473T>C), 150597936(c.-3500A>T), 150597991(c.-3555G>A), 150598019(c.-3583G>A), 150598067(c.-3631T>C), 150598102(c.-3666G>T), 150598110(c.-3674C>T), 150598152(c.-3716G>C), 150598159(c.-3723C>T), 150598235(c.-3799T>C), 150598288(c.-3852A>G), 150598309(c.-3873G>C), 150598401(c.-3965C>G), 150598425(c.-3989G>C), 150598465(c.-4029T>C), 150598835(c.-4399A>G), 150599156(c.-4720A>G), 150599161(c.-4725C>T), 150599190(c.-4754G>A), 150599193(c.-4757A>C), 150599254(c.-4818T>C), 150599436(c.-5000T>C), 5'UTR 150591814(c.1025A>T), 150591848(c.991G>A), 150591862(c.977T>C), 150591927(c.912A>C), 150591945(c.894G>T), 150592015(c.824A>G), 150592049(c.790A>G), 150592077(c.762A>G), 150592102(c.737G>T), 150592133(c.706C>T), 150592208(c.631G>A), 150592490(c.349C>T), CDS 3'UTR INTRON 150592659(c.280-100T>C), 150592887(c.279+253A>T), 150592888(c.279+252A>G), 150592889(c.279+251C>G), 150592901(c.279+239T>C), 150592916(c.279+224A>G), 150592971(c.279+169C>A), 150593040(c.279+100C>T), 150593116(c.279+24C>T), 150593482(c.174-45G>A), 150593710(c.174-273A>T), 150593773(c.174-336C>G), 150593774(c.174-337G>T), 150594232(c.173+32T>C), -1kb 150586781(c.6638G>C), 150586805(c.6614T>G), 150586819(c.6600G>A), 150586827(c.6592C>T), 150586852(c.6567C>G), 150586870(c.6549G>A), 150586921(c.6498A>G), 150586995(c.6424A>T), 150586996(c.6423A>T), 150587053(c.6366G>A), 150587186(c.6233C>A), 150587187(c.6232A>G), 150587207(c.6212T>A), 150587303(c.6116C>T), 150587339(c.6080C>T), 150587346(c.6073T>G), 150587438(c.5981C>T), 150587451(c.5968A>G), 150587639(c.5780A>C), 150587642(c.5777C>T), 150587674(c.5745T>C), 150587778(c.5641A>G), 150587787(c.5632A>G), 150587820(c.5599G>T), 150587956(c.5463C>T), 150588257(c.5162G>A), 150588729(c.4690T>G), 150589035(c.4384C>T), 150589056(c.4363G>A), 150589425(c.3994G>A), 150589585(c.3834A>G), 150589713(c.3706A>C), 150589934(c.3485T>A), 150589957(c.3462C>A), 150590728(c.2691T>C), 150590773(c.2646C>A), 150590870(c.2549T>A), 150590879(c.2540T>C), 150590914(c.2505T>A), 150590987(c.2432G>A), 150591064(c.2355A>G), 150591167(c.2252C>T), 150591328(c.2091A>G), 150591330(c.2089A>G), 150591391(c.2028C>A), 150591393(c.2026T>A), 150591433(c.1986C>G), 150591515(c.1904T>C), 150591518(c.1901T>C),
Insertions	+1kb 150595016 (c.-581_-580insGT), 150596069 (c.-1634_-1633insACAAC), 150596085 (c.-1650_-1649insCACCA), 150597017 (c.-2583_-2582dupTG), 150598480 (c.-4045_-4044insT), 150599446 (c.-5011_-5010insCCT), 5'UTR CDS 3'UTR INTRON -1kb 150587820 (c.5598_5599insGT), 150589800 (c.3616_3618dupACA),
Deletions	+1kb 150596057 (c.-1624_-1622delCCC), 150596318 (c.-1888_-1883delCTCTCT), 150596543 (c.-2111_-2108delAACG), 150597610 (c.-3177_-3175delGCG), 150598496 (c.-4063_-4061delTCT), 150599206 (c.-4771delA), 5'UTR CDS 3'UTR INTRON 150592889 (c.279+249_279+250delTC), -1kb 150591032 (c.2383_2386delTGAG), 150591298 (c.2117_2120delACAC),
coding sequence substitutions
premature termination by the nucleotide substitution	0
synonymous num	0
non-synonymous num	0
synonymous substitutions
non-synonymous substitutions
B6 transcript (ENSMUST00000200840)	MEDSFLESFGRLSLQQRQQQPPPRPPPARGPPPRRHSFRKHLYLLRGLPGSGKTTLASCL TLP*
MSMv4 transcript	MEDSFLESFGRLSLQQRQQQPPPRPPPARGPPPRRHSFRKHLYLLRGLPGSGKTTLASCL TLP*
homology	100.00 (64 / 64)

Exon Detail Report

Target Strain	MSMv4 JF1v3 KJRv1 SWNv1 CHDv1 NJLv1 BLG2v1 HMIv1 BFMv1 PGN2v1

Gene Symbol (Gene ID)	N4bp2l1 (ENSMUSG00000041132)
Transcript ID	ENSMUST00000200840

No.	Exon / Intron	Start	End	Start Phase	End Phase	Length	Sequence
	5' upstream sequence						..........GGAGCAACCTGACTGCTCCACACCCCAACCCAGGGGAAGTCCAAAGCCAG CGAGATGCACAGGCAGCTGTCCTCCCTCCTTGTACACAGCCCCTTCCTAACGCGCTCATC AGGAAATCTCTGATTTTGACATAGCTTCTGAGTCTTAGAAAGACACTACTTCTTTCTCCA CACTTCCTTCTCATAATGCTCATACCTTAGGTGCCAGACACAAAATGTTTTGATTTTTAC AACAATTGTAGCCAAAGCCACCAATATCTCAGATTTTCTAGTATGCAAATTTTGAACAGT TTCATTCTGAAAACCAGGACCATTCTATTGCTTCTAAAGGGAAATACTGGAGAGTCACAG CCAGTGGGTGCTGCCAACTCCTGCAACTTGAATTTGGTTTTATATAAATGGTACCATGAC AATCTCCCCTGCTATGTGGCAGCGGAAGGTGTTCATGAAGCCTCCTGAGTCCACCCGAGA CCCAAGGAGTAAGAAGAGACTTAAAAGTTGCATACAGCTTTTAAGGATAGTTTTGGCAGG CCGGTACCGGTACTAAGGAAACGTACAGGACCCTGAAGGAGTGTACCTCAGTCCTTGGGA CCCCAGCCAGGTGCTGACTGATGCACAGGCAGTAGGGGAGACAACGGTCTTTACTGTGAC TGCTCGGATGCGCTGGTCACATTCTCTAATCTCCCACGGAAAGTATTTACTTTCAAGGTC TAGGCCGGTCTGAAGTGAGATGAGGCAGAGCCGTGGCAGAGGGCTGGGCTTCCACAGTGA CTGCAGGGAAACCTCCCACTGTGTCCCCGGGGCCAGGCCCCTTCCCTTGGGAAGGGCTGC GGAAGGCGGCGGGGGGCTGGAGGGAGCGCTGGGGGCTGCGTCACCCACGCTTCCCCCGGC TGTCAGACTCCCCGGCAACGCCGGGGCCTCGCAGGTAGAGACGCCCCCTCCCGCGGTTCG CGGGGCCGGGGAGGAGGGGCCGGGCTCCGAGCGCCCGCCCCTCCATCTAT
1	EXON 1	150594264	150594528	-	2	265	CACATGGCCGGAGAGTCACAAAAACAACAGCTTTGGCCAAGACCGTGACTTCAGGAAGGG AGCTCAGGGCCCTCGCCGCCAGCCCCCTCCCCATGGAGGACAGTTTTCTGGAATCGTTCG GGAGGCTGAGCCTCCAACAGCGGCAGCAGCAGCCGCCTCCTCGGCCGCCGCCCGCTCGGG GGCCACCTCCGCGCCGCCACAGCTTTAGGAAACACCTCTACCTCCTGCGCGGCCTCCCGG GCTCGGGAAAAACCACGCTGGCCAG
	INTRON 1 - 2	150593438	150594263			826	GTAATGAGAGCGGCCTGGCGCCCAC..........CCGGTTCTATTACCTCCCCTCGCAG
2	EXON 2	150593140	150593437	2	-	298	CTGCCTCACCCTGCCGTAGAAGCCGCCCGCCCTTCTCAGCGTCTTGGCTCCTGTTTACAT CTCTGTGACTGCGCTTAGGTTTGCACACGGTTGCTTTTGCCTTCTGTGAGATACTTGAAG ATAGGGGCCATGTCTTACCCTCCGTGAACGTTATCGGGCACACACTAGTCGATAGAAGCA GTCACTTGCCACCTGTGTGCTTGCTTCCCTTCTCATCAGATAAGGCTAGCCCTAGGACCC TGGAACCGCTGAAGAATCAAGGTAGCCCGCGGTCACATGCTGATTTCCATGGCACCAG
	INTRON 2 - 3	150592560	150593139			580	GTAGTGATCATAGGGGGAGGGCCTG..........TGTCTCTCCTTTTCTACACTTCTAG
3	EXON 3	150591752	150592559	-	-	808	GATTTTAATTCCTGCTTGACATTTGACTAAGCAGAAGACATCGGACAAGAGAACATCTCA TTAAACACCTGTAGGGACAGATTGGGTGAGCCCCGGCCTGAAGGCAGAAGCCTGCTGTAG ATCTACCTCATCACTAGCTAGCTGCTGTCTTAAGCAACCATGACGCCTCTCTGTGACTAC TAAGAGGTGATTAAGTTAGAGGGTTCAATGGGAATCTTTCTCGTAACTTCCTGTTGCCAG ATCTAAAGAGTCAAGTATGGCTTCCTAGCCAAGCTCTGCCACTCACTGGAGATGTAGTCA CTGGTTAGGTGACTGATTGGCAGGACAAGCCCTCGGAGTTACAGAGGCATTAGCTGTGAC CAGAGGAGGCAAACCATGGACTCGGCCCCCTACTGTAAGGGGCAATGTAAGCCTTGGCAT GCCTCCTGGTGGGCTGTGGGTTTATATATAAAGTTCCTCAGGGTGGGTTGCAAGTAAGAA CCGGTCTGGAAGTCACAGCAAGACCTTCCCGGACCATGTTTTCCAGGGAGGGAATAGGAG AGAGGAGAATAGAAGATTGCCTTAAATAACACCATGTAGAACGGAGACACTGTACGGTTA TTATGTCCTTACTGTATCCTGAGGGTCATTTTCTCTATATGCTTTCAACATTTTCTATAA TGGACGTGTATTTCTTAAACCAGACCTTTAAATAAAACCTTTTTCTTTAACATTAGAGGA AGTTAGTTTTTGCAAATATGGGCTCTTCTCCTGCTTAACTTTTATATCTCATTTGACTAA ATAACTAATAAAATCTCTTTTAAAAATA
	3' upstream sequence						GGATATGTCTTGTCTTTCAAGCCAACATTGTATTCTAGAATCTTCATGTCCAACTTGCTG GGATATGGAAAACATCTTTCTGAATTCTTCAGATTTTCCTTTTAAATTGGGTTTTTATCT GGTTTCAACATTTTAGCCATATTACAGTACCCGAGCTAGCATGTGCTCTAAGTCTACATT AAAATCTGTTCTCGGTTGAGCATTGTCTGGGGATAGGTGGTTACTATGAACTGCGACTCC AGCTCTGAGAACTCATCCTAAGGAAATGTTTGCACAAACATGCGGACACAGAGGAATGCT CATCAGAGATATGTCTTTGTGTGACAGAAGAAAGTAAGATAACTTAAATAAGTATAATAT ACTGATTAAATAGTAAACATAAAAATAGATTGGCTTATGAGTCACACAGTTATTGATGGA AGCGCACACACACACACACACACACACACACACGACCTGTAAATGTATTCTTCCCTGATA TTAAATTAAAAGCCTGTCCCGGTGATCCCAGCTCTTGGGAAGTAGAGGCAGGAGTATCAG AAGTTCAGAGTCATCTTTGGCTACATCGTCAGTTCAAGACCAACTTGGGATAGGTGAGAT CCTGTCCCCCAAAACGAAAAACAAACTAAGAAGAAAGCTACACACAGACACGCAAACCTC ATTTTATGCTCAAAGAAAGAGGTCTGTGTAGATGCTTAGAAAAAAACAAACTGAGTGAGA AGATAAGTAGACACCCATGGGTGCTGACTTTTAGTAGCGGGACCATAGACTTTCCCCTCA TTTGTTTTATGATTTTCAGCAACAGTTAGTTGTGTGTTGCCTGGTAACTTAAAAAAAATT TTTTTGAAAGATATGTGTGTGTGGTTGTTTTGCGTGCACACATGTATGTTTTCCACATGT GTGCTCGATGCCTAGAGACGACTTCAGGAGAAGGCACTGCCTCCTCTGAAGCTAGAGTTG CAGATGGTCATGTGGGTGATGGGAATCAAACCCTGGCCCC..........

Sequence Detail Report

Gene Symbol (Gene ID)	N4bp2l1 (ENSMUSG00000041132)
Transcript ID	ENSMUST00000200840

		SNP Information
Strain :
Sequence Retrieve :
Exon translate : CDS Start ( 1 ) - End ( 64 ) -
Strand :	forward reverse
Show sequence :	nucleotide amino acid
Color information