VariantTable
SequenceCutter
Homology
search
Download
Updated genome
information
Help
& Docs
Previous ver
(NIG_MoG data)
Tutorials are available here.
Search for genomic variation
Search for mouse strain
BAC clone ordering.
cursor point :
On scale region : Click two point for zoom in view region.
On read coverage region : Click to browse alignment view.
name
Cops5 (ENSMUSG00000025917)
type
gene
link
VEGA
Ensembl
MGI
xref
definition
locus_tag
: Cops5
note
: COP9 (constitutive photomorphogenic) homolog, subunit 5 (Arabidopsis thaliana) [Source:MGI Symbol;Acc:MGI:1349415]
name
Cspp1 (ENSMUSG00000056763)
type
gene
link
VEGA
Ensembl
MGI
xref
definition
locus_tag
: Cspp1
note
: centrosome and spindle pole associated protein 1 [Source:MGI Symbol;Acc:MGI:2681832]
name
Cops5 (ENSMUSG00000025917)
type
mRNA
link
VEGA
Ensembl
MGI
xref
definition
note
: transcript_id=ENSMUST00000027050
name
Cops5 (ENSMUSG00000025917)
type
mRNA
link
VEGA
Ensembl
MGI
xref
definition
note
: transcript_id=ENSMUST00000186528
name
Cops5 (ENSMUSG00000025917)
type
mRNA
link
VEGA
Ensembl
MGI
xref
definition
note
: transcript_id=ENSMUST00000188619
name
Cspp1 (ENSMUSG00000056763)
type
mRNA
link
VEGA
Ensembl
MGI
xref
definition
note
: transcript_id=ENSMUST00000191012
name
Cspp1 (ENSMUSG00000056763)
type
mRNA
link
VEGA
Ensembl
MGI
xref
definition
note
: transcript_id=ENSMUST00000071087
name
Cspp1 (ENSMUSG00000056763)
type
mRNA
link
VEGA
Ensembl
MGI
xref
definition
note
: transcript_id=ENSMUST00000117415
name
Cops5 (ENSMUSG00000025917)
(Detail)
type
CDS
link
VEGA
Ensembl
MGI
xref
CCDS:
CCDS14818.1
Uniprot/SWISSPROT:
O35864
RefSeq_peptide:
NP_001264030.1
RefSeq_peptide:
NP_038743
RefSeq_mRNA:
NM_001277101.1
RefSeq_mRNA:
NM_013715.2
Vega_transcript:
Cops5-001
Vega_transcript:
OTTMUST00000072996
UCSC:uc007ahe.2
Fantom:
2700067H17
Fantom:
I730044N10
Fantom:
I830030O16
EMBL:
AF065386
EMBL:
AF068223
EMBL:
AK012499
EMBL:
AK146271
EMBL:
AK151492
EMBL:
BC046753
EMBL:
U70736
GO:
GO:0000338
GO:
GO:0000338
GO:
GO:0003713
GO:
GO:0004843
GO:
GO:0004843
GO:
GO:0005515
GO:
GO:0005634
GO:
GO:0005634
GO:
GO:0005654
GO:
GO:0005654
GO:
GO:0005667
GO:
GO:0005737
GO:
GO:0005737
GO:
GO:0006355
GO:
GO:0008021
GO:
GO:0008021
GO:
GO:0008180
GO:
GO:0008180
GO:
GO:0008237
GO:
GO:0008237
GO:
GO:0010388
GO:
GO:0010388
GO:
GO:0016579
GO:
GO:0016579
GO:
GO:0030054
GO:
GO:0045944
GO:
GO:0045944
GO:
GO:0046328
GO:
GO:0046328
GO:
GO:0046872
GO:
GO:0048471
GO:
GO:0051726
GO:
GO:1903894
GO:
GO:1903894
GO:
GO:1990182
GO:
GO:1990182
MEROPS:M67.002
MGI_trans_name:
Cops5-001
Vega_translation:
178689
Vega_translation:
OTTMUSP00000037726
goslim_goa:
GO:0000988
goslim_goa:
GO:0003674
goslim_goa:
GO:0005575
goslim_goa:
GO:0005622
goslim_goa:
GO:0005623
goslim_goa:
GO:0005634
goslim_goa:
GO:0005654
goslim_goa:
GO:0005737
goslim_goa:
GO:0006464
goslim_goa:
GO:0006810
goslim_goa:
GO:0008150
goslim_goa:
GO:0008233
goslim_goa:
GO:0016023
goslim_goa:
GO:0016192
goslim_goa:
GO:0043167
goslim_goa:
GO:0043226
goslim_goa:
GO:0043234
protein_id:
AAC17179.1
protein_id:
AAD03470.1
protein_id:
AAF61318.1
protein_id:
AAH46753.1
protein_id:
BAB28282.1
protein_id:
BAE27030.1
protein_id:
BAE30445.1
OTTP:
OTTMUSP00000037726
OTTT:
OTTMUST00000072996
UniParc:
UPI000000BAB7
definition
note
: transcript_id=ENSMUST00000027050
protein_id
: ENSMUSP00000027050
translation
: MAASGSGMAQKTWELANNMQEAQSIDEIYKYDKKQQQEILAAKPWTKDHHYFKYCKISALALLKMVMHARSGGNLEVMGLMLGKVDGETMIIMDSFALPVEGTETRVNAQAAAYEYMAAYIENAKQVGRLENAIGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFVAVVIDPTRTISAGKVNLGAFRTYPKGYKPPDEGPSEYQTIPLNKIEDFGVHCKQYYALEVSYFKSSLDRKLLELLWNKYWVNTLSSSSLLTNADYTTGQVFDLSEKLEQSEAQLGRGSFMLGLETHDRKSEDKLAKATRDSCKTTIEAIHGLMSQVIKDKLFNQINVA
name
Cops5 (ENSMUSG00000025917)
(Detail)
type
CDS
link
VEGA
Ensembl
MGI
xref
Vega_transcript:
Cops5-006
Vega_transcript:
OTTMUST00000118982
Uniprot/SPTREMBL:
A0A087WRH6
EMBL:
AC102570
GO:
GO:0000338
GO:
GO:0003713
GO:
GO:0004843
GO:
GO:0005515
GO:
GO:0005634
GO:
GO:0005654
GO:
GO:0005667
GO:
GO:0005737
GO:
GO:0006355
GO:
GO:0008021
GO:
GO:0008180
GO:
GO:0008237
GO:
GO:0010388
GO:
GO:0016579
GO:
GO:0045944
GO:
GO:0046328
GO:
GO:0051726
GO:
GO:1903894
GO:
GO:1990182
MGI_trans_name:
Cops5-006
Vega_translation:
178691
Vega_translation:
OTTMUSP00000066329
goslim_goa:
GO:0000988
goslim_goa:
GO:0003674
goslim_goa:
GO:0005575
goslim_goa:
GO:0005622
goslim_goa:
GO:0005623
goslim_goa:
GO:0005634
goslim_goa:
GO:0005654
goslim_goa:
GO:0005737
goslim_goa:
GO:0006464
goslim_goa:
GO:0006810
goslim_goa:
GO:0008150
goslim_goa:
GO:0008233
goslim_goa:
GO:0016023
goslim_goa:
GO:0016192
goslim_goa:
GO:0043226
goslim_goa:
GO:0043234
OTTP:
OTTMUSP00000066329
OTTT:
OTTMUST00000118982
UniParc:
UPI00000EA150
definition
note
: transcript_id=ENSMUST00000186528
protein_id
: ENSMUSP00000140633
translation
: MAASGSGMAQKTWELANNMQEAQSIDEIYKYDKKQQQEILAAKPWTKE
name
Cops5 (ENSMUSG00000025917)
(Detail)
type
CDS
link
VEGA
Ensembl
MGI
xref
Vega_transcript:
Cops5-005
Vega_transcript:
OTTMUST00000118983
Uniprot/SPTREMBL:
A0A087WQA8
UCSC:uc033fia.1
EMBL:
AC102570
GO:
GO:0000338
GO:
GO:0003713
GO:
GO:0004843
GO:
GO:0005515
GO:
GO:0005634
GO:
GO:0005654
GO:
GO:0005667
GO:
GO:0005737
GO:
GO:0006355
GO:
GO:0008021
GO:
GO:0008180
GO:
GO:0008237
GO:
GO:0010388
GO:
GO:0016579
GO:
GO:0045944
GO:
GO:0046328
GO:
GO:0051726
GO:
GO:1903894
GO:
GO:1990182
MGI_trans_name:
Cops5-005
Vega_translation:
178692
Vega_translation:
OTTMUSP00000066330
goslim_goa:
GO:0000988
goslim_goa:
GO:0003674
goslim_goa:
GO:0005575
goslim_goa:
GO:0005622
goslim_goa:
GO:0005623
goslim_goa:
GO:0005634
goslim_goa:
GO:0005654
goslim_goa:
GO:0005737
goslim_goa:
GO:0006464
goslim_goa:
GO:0006810
goslim_goa:
GO:0008150
goslim_goa:
GO:0008233
goslim_goa:
GO:0016023
goslim_goa:
GO:0016192
goslim_goa:
GO:0043226
goslim_goa:
GO:0043234
OTTP:
OTTMUSP00000066330
OTTT:
OTTMUST00000118983
UniParc:
UPI00046210DE
definition
note
: transcript_id=ENSMUST00000188619
protein_id
: ENSMUSP00000140115
translation
: MSLRRRRAPAREWSGPTSPPVSSVMAALRVYHHYFKYCKISALALLKMVMHARSGGNLEVMGLMLGKVDGETMIIMDSFALPVEGTETRVNAQAAAYEYMAAYIENAKQVGRLENAIGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFVAVVIDPTRTISAGKVNLGAFRTYPKGYKPPDEGPSEYQTIPLNKIEDFGVHCKQYYALEVS
name
type
misc_feature
link
xref
definition
note
: contig AC102570.8 1..194371(-1)
name
Cops5 (ENSMUSG00000025917)
type
misc_RNA
link
VEGA
Ensembl
MGI
xref
Vega_transcript:
OTTMUST00000072998
Vega_transcript:
OTTMUST00000072998
MGI_trans_name:
Cops5-003
OTTT:
OTTMUST00000072998
definition
note
: retained_intron
note
: transcript_id=ENSMUST00000139578
name
Cops5 (ENSMUSG00000025917)
type
misc_RNA
link
VEGA
Ensembl
MGI
xref
Vega_transcript:
OTTMUST00000072997
Vega_transcript:
OTTMUST00000072997
MGI_trans_name:
Cops5-002
OTTT:
OTTMUST00000072997
definition
note
: retained_intron
note
: transcript_id=ENSMUST00000150509
name
Cops5 (ENSMUSG00000025917)
type
misc_RNA
link
VEGA
Ensembl
MGI
xref
Vega_transcript:
OTTMUST00000118984
Vega_transcript:
OTTMUST00000118984
MGI_trans_name:
Cops5-004
OTTT:
OTTMUST00000118984
definition
note
: retained_intron
note
: transcript_id=ENSMUST00000191296
name
Cspp1 (ENSMUSG00000056763)
type
misc_RNA
link
VEGA
Ensembl
MGI
xref
Vega_transcript:
OTTMUST00000118985
Vega_transcript:
OTTMUST00000118985
UCSC:uc056ycf.1
MGI_trans_name:
Cspp1-016
OTTT:
OTTMUST00000118985
definition
note
: retained_intron
note
: transcript_id=ENSMUST00000190610
name
Cspp1 (ENSMUSG00000056763)
type
misc_RNA
link
VEGA
Ensembl
MGI
xref
Vega_transcript:
OTTMUST00000067776
Vega_transcript:
OTTMUST00000067776
MGI_trans_name:
Cspp1-002
OTTT:
OTTMUST00000067776
definition
note
: retained_intron
note
: transcript_id=ENSMUST00000143606
name
Cspp1 (ENSMUSG00000056763)
type
misc_RNA
link
VEGA
Ensembl
MGI
xref
Vega_transcript:
OTTMUST00000118987
Vega_transcript:
OTTMUST00000118987
MGI_trans_name:
Cspp1-020
OTTT:
OTTMUST00000118987
definition
note
: retained_intron
note
: transcript_id=ENSMUST00000191360
Location
chromosome :
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
X
(Build: mm10)
view_point (b.p.) :
-
zoom in :
zoom out :
Picture width(pt) :
Colors
Annotation:
Gene
mRNA
CDS
genetic markers
Tracks
RefSeq genes :
not show
show
Gene, mRNA, CDS :
not show
show
MSM BAC end pairs :
not show
show
B6N BAC end pairs :
not show
show
MSMv4 :
not show
show
JF1v3 :
not show
show
KJRv1 :
not show
show
SWNv1 :
not show
show
CHDv1 :
not show
show
NJLv1 :
not show
show
BLG2v1 :
not show
show
HMIv1 :
not show
show
BFMv1 :
not show
show
PGNv1 :
not show
show
Click to browse alignment view.
BAC clone ordering.