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name
Sema4c (ENSMUSG00000026121)
type
gene
link
VEGA
Ensembl
MGI
xref
definition
locus_tag
: Sema4c
note
: sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4C [Source:MGI Symbol;Acc:MGI:109252]
name
Sema4c (ENSMUSG00000026121)
type
mRNA
link
VEGA
Ensembl
MGI
xref
definition
note
: transcript_id=ENSMUST00000191677
name
Sema4c (ENSMUSG00000026121)
type
mRNA
link
VEGA
Ensembl
MGI
xref
definition
note
: transcript_id=ENSMUST00000191642
name
Sema4c (ENSMUSG00000026121)
type
mRNA
link
VEGA
Ensembl
MGI
xref
definition
note
: transcript_id=ENSMUST00000195620
name
Sema4c (ENSMUSG00000026121)
type
mRNA
link
VEGA
Ensembl
MGI
xref
definition
note
: transcript_id=ENSMUST00000114991
name
Sema4c (ENSMUSG00000026121)
type
mRNA
link
VEGA
Ensembl
MGI
xref
definition
note
: transcript_id=ENSMUST00000193382
name
Sema4c (ENSMUSG00000026121)
(Detail)
type
CDS
link
VEGA
Ensembl
MGI
xref
CCDS:
CCDS48240.1
Uniprot/SWISSPROT:
Q64151
RefSeq_mRNA_predicted:
XM_006495805.1
RefSeq_mRNA_predicted:
XM_006495809.2
RefSeq_peptide_predicted:
XP_006495868.1
RefSeq_peptide_predicted:
XP_006495872.1
Vega_transcript:
OTTMUST00000049351
Vega_transcript:
Sema4c-003
UCSC:uc007aqr.4
EMBL:
S79463
GO:
GO:0001843
GO:
GO:0005515
GO:
GO:0005615
GO:
GO:0014069
GO:
GO:0016021
GO:
GO:0021535
GO:
GO:0021549
GO:
GO:0030054
GO:
GO:0030672
GO:
GO:0032874
GO:
GO:0042692
GO:
GO:0045211
GO:
GO:0071526
MGI_trans_name:
Sema4c-003
Vega_translation:
178982
Vega_translation:
OTTMUSP00000022844
goslim_goa:
GO:0003674
goslim_goa:
GO:0005575
goslim_goa:
GO:0005576
goslim_goa:
GO:0005615
goslim_goa:
GO:0005622
goslim_goa:
GO:0005623
goslim_goa:
GO:0005737
goslim_goa:
GO:0005886
goslim_goa:
GO:0007165
goslim_goa:
GO:0008150
goslim_goa:
GO:0009790
goslim_goa:
GO:0016023
goslim_goa:
GO:0030154
goslim_goa:
GO:0040011
goslim_goa:
GO:0043226
goslim_goa:
GO:0048646
goslim_goa:
GO:0048856
goslim_goa:
GO:0048870
protein_id:
AAB35184.1
OTTP:
OTTMUSP00000022844
OTTT:
OTTMUST00000049351
UniParc:
UPI00000227E7
definition
note
: transcript_id=ENSMUST00000191677
protein_id
: ENSMUSP00000141263
translation
: MAPHWAVWLLAAGLWGLGIGAEMWWNLVPRKTVSSGELVTVVRRFSQTGIQDFLTLTLTEHSGLLYVGAREALFAFSVEALELQGAISWEAPAEKKIECTQKGKSNQTECFNFIRFLQPYNSSHLYVCGTYAFQPKCTYINMLTFTLDRAEFEDGKGKCPYDPAKGHTGLLVDGELYSATLNNFLGTEPVILRYMGTHHSIKTEYLAFWLNEPHFVGSAFVPESVGSFTGDDDKIYFFFSERAVEYDCYSEQVVARVARVCKGDMGGARTLQKKWTTFLKARLVCSAPDWKVYFNQLKAVHTLRGASWHNTTFFGVFQARWGDMDLSAVCEYQLEQIQQVFEGPYKEYSEQAQKWARYTDPVPSPRPGSCINNWHRDNGYTSSLELPDNTLNFIKKHPLMEDQVKPRLGRPLLVKKNTNFTHVVADRVPGLDGATYTVLFIGTGDGWLLKAVSLGPWIHMVEELQVFDQEPVESLVLSQSKKVLFAGSRSQLVQLSLADCTKYRFCVDCVLARDPYCAWNVNTSRCVATTSGRSGSFLVQHVANLDTSKMCNQYGIKKVRSIPKNITVVSGTDLVLPCHLSSNLAHAHWTFGSQDLPAEQPGSFLYDTGLQALVVMAAQSRHSGPYRCYSEEQGTRLAAESYLVAVVAGSSVTLEARAPLENLGLVWLAVVALGAVCLVLLLLVLSLRRRLREELEKGAKASERTLVYPLELPKEPASPPFRPGPETDEKLWDPVGYYYSDGSLKIVPGHARCQPGGGPPSPPPGIPGQPLPSPTRLHLGGGRNSNANGYVRLQLGGEDRGGSGHPLPELADELRRKLQQRQPLPDSNPEESSV
name
Sema4c (ENSMUSG00000026121)
(Detail)
type
CDS
link
VEGA
Ensembl
MGI
xref
CCDS:
CCDS48240.1
Uniprot/SWISSPROT:
Q64151
RefSeq_peptide:
NP_001291259.1
RefSeq_mRNA:
NM_001304330.1
RefSeq_mRNA_predicted:
XM_006495807.1
RefSeq_mRNA_predicted:
XM_006495808.1
RefSeq_peptide_predicted:
XP_006495870.1
RefSeq_peptide_predicted:
XP_006495871.1
Vega_transcript:
OTTMUST00000049354
Vega_transcript:
Sema4c-006
UCSC:uc056ycm.1
EMBL:
S79463
GO:
GO:0001843
GO:
GO:0005515
GO:
GO:0005615
GO:
GO:0005615
GO:
GO:0014069
GO:
GO:0016021
GO:
GO:0021535
GO:
GO:0021549
GO:
GO:0030054
GO:
GO:0030672
GO:
GO:0032874
GO:
GO:0032874
GO:
GO:0042692
GO:
GO:0042692
GO:
GO:0045211
GO:
GO:0071526
MGI_trans_name:
Sema4c-006
Vega_translation:
178983
Vega_translation:
OTTMUSP00000022847
goslim_goa:
GO:0003674
goslim_goa:
GO:0005575
goslim_goa:
GO:0005576
goslim_goa:
GO:0005615
goslim_goa:
GO:0005622
goslim_goa:
GO:0005623
goslim_goa:
GO:0005737
goslim_goa:
GO:0005886
goslim_goa:
GO:0007165
goslim_goa:
GO:0008150
goslim_goa:
GO:0009790
goslim_goa:
GO:0016023
goslim_goa:
GO:0030154
goslim_goa:
GO:0040011
goslim_goa:
GO:0043226
goslim_goa:
GO:0048646
goslim_goa:
GO:0048856
goslim_goa:
GO:0048870
protein_id:
AAB35184.1
OTTP:
OTTMUSP00000022847
OTTT:
OTTMUST00000049354
UniParc:
UPI00000227E7
definition
note
: transcript_id=ENSMUST00000191642
protein_id
: ENSMUSP00000142284
translation
: MAPHWAVWLLAAGLWGLGIGAEMWWNLVPRKTVSSGELVTVVRRFSQTGIQDFLTLTLTEHSGLLYVGAREALFAFSVEALELQGAISWEAPAEKKIECTQKGKSNQTECFNFIRFLQPYNSSHLYVCGTYAFQPKCTYINMLTFTLDRAEFEDGKGKCPYDPAKGHTGLLVDGELYSATLNNFLGTEPVILRYMGTHHSIKTEYLAFWLNEPHFVGSAFVPESVGSFTGDDDKIYFFFSERAVEYDCYSEQVVARVARVCKGDMGGARTLQKKWTTFLKARLVCSAPDWKVYFNQLKAVHTLRGASWHNTTFFGVFQARWGDMDLSAVCEYQLEQIQQVFEGPYKEYSEQAQKWARYTDPVPSPRPGSCINNWHRDNGYTSSLELPDNTLNFIKKHPLMEDQVKPRLGRPLLVKKNTNFTHVVADRVPGLDGATYTVLFIGTGDGWLLKAVSLGPWIHMVEELQVFDQEPVESLVLSQSKKVLFAGSRSQLVQLSLADCTKYRFCVDCVLARDPYCAWNVNTSRCVATTSGRSGSFLVQHVANLDTSKMCNQYGIKKVRSIPKNITVVSGTDLVLPCHLSSNLAHAHWTFGSQDLPAEQPGSFLYDTGLQALVVMAAQSRHSGPYRCYSEEQGTRLAAESYLVAVVAGSSVTLEARAPLENLGLVWLAVVALGAVCLVLLLLVLSLRRRLREELEKGAKASERTLVYPLELPKEPASPPFRPGPETDEKLWDPVGYYYSDGSLKIVPGHARCQPGGGPPSPPPGIPGQPLPSPTRLHLGGGRNSNANGYVRLQLGGEDRGGSGHPLPELADELRRKLQQRQPLPDSNPEESSV
name
Sema4c (ENSMUSG00000026121)
(Detail)
type
CDS
link
VEGA
Ensembl
MGI
xref
CCDS:
CCDS48240.1
Uniprot/SWISSPROT:
Q64151
RefSeq_peptide:
NP_001291258.1
RefSeq_mRNA:
NM_001304329.1
Vega_transcript:
OTTMUST00000049350
Vega_transcript:
Sema4c-002
UCSC:uc007aqq.4
EMBL:
S79463
GO:
GO:0001843
GO:
GO:0005515
GO:
GO:0005615
GO:
GO:0014069
GO:
GO:0016021
GO:
GO:0021535
GO:
GO:0021549
GO:
GO:0030054
GO:
GO:0030672
GO:
GO:0032874
GO:
GO:0042692
GO:
GO:0045211
GO:
GO:0071526
MGI_trans_name:
Sema4c-002
Vega_translation:
178984
Vega_translation:
OTTMUSP00000022843
goslim_goa:
GO:0003674
goslim_goa:
GO:0005575
goslim_goa:
GO:0005576
goslim_goa:
GO:0005615
goslim_goa:
GO:0005622
goslim_goa:
GO:0005623
goslim_goa:
GO:0005737
goslim_goa:
GO:0005886
goslim_goa:
GO:0007165
goslim_goa:
GO:0008150
goslim_goa:
GO:0009790
goslim_goa:
GO:0016023
goslim_goa:
GO:0030154
goslim_goa:
GO:0040011
goslim_goa:
GO:0043226
goslim_goa:
GO:0048646
goslim_goa:
GO:0048856
goslim_goa:
GO:0048870
protein_id:
AAB35184.1
OTTP:
OTTMUSP00000022843
OTTT:
OTTMUST00000049350
UniParc:
UPI00000227E7
definition
note
: transcript_id=ENSMUST00000195620
protein_id
: ENSMUSP00000141527
translation
: MAPHWAVWLLAAGLWGLGIGAEMWWNLVPRKTVSSGELVTVVRRFSQTGIQDFLTLTLTEHSGLLYVGAREALFAFSVEALELQGAISWEAPAEKKIECTQKGKSNQTECFNFIRFLQPYNSSHLYVCGTYAFQPKCTYINMLTFTLDRAEFEDGKGKCPYDPAKGHTGLLVDGELYSATLNNFLGTEPVILRYMGTHHSIKTEYLAFWLNEPHFVGSAFVPESVGSFTGDDDKIYFFFSERAVEYDCYSEQVVARVARVCKGDMGGARTLQKKWTTFLKARLVCSAPDWKVYFNQLKAVHTLRGASWHNTTFFGVFQARWGDMDLSAVCEYQLEQIQQVFEGPYKEYSEQAQKWARYTDPVPSPRPGSCINNWHRDNGYTSSLELPDNTLNFIKKHPLMEDQVKPRLGRPLLVKKNTNFTHVVADRVPGLDGATYTVLFIGTGDGWLLKAVSLGPWIHMVEELQVFDQEPVESLVLSQSKKVLFAGSRSQLVQLSLADCTKYRFCVDCVLARDPYCAWNVNTSRCVATTSGRSGSFLVQHVANLDTSKMCNQYGIKKVRSIPKNITVVSGTDLVLPCHLSSNLAHAHWTFGSQDLPAEQPGSFLYDTGLQALVVMAAQSRHSGPYRCYSEEQGTRLAAESYLVAVVAGSSVTLEARAPLENLGLVWLAVVALGAVCLVLLLLVLSLRRRLREELEKGAKASERTLVYPLELPKEPASPPFRPGPETDEKLWDPVGYYYSDGSLKIVPGHARCQPGGGPPSPPPGIPGQPLPSPTRLHLGGGRNSNANGYVRLQLGGEDRGGSGHPLPELADELRRKLQQRQPLPDSNPEESSV
name
Sema4c (ENSMUSG00000026121)
(Detail)
type
CDS
link
VEGA
Ensembl
MGI
xref
CCDS:
CCDS48240.1
Uniprot/SWISSPROT:
Q64151
RefSeq_peptide:
NP_001119519
RefSeq_mRNA:
NM_001126047.2
RefSeq_mRNA_predicted:
XM_006495810.2
RefSeq_peptide_predicted:
XP_006495873.1
Vega_transcript:
OTTMUST00000049349
Vega_transcript:
Sema4c-001
UCSC:uc007aqr.4
EMBL:
S79463
GO:
GO:0001843
GO:
GO:0005515
GO:
GO:0005615
GO:
GO:0014069
GO:
GO:0016021
GO:
GO:0021535
GO:
GO:0021549
GO:
GO:0030054
GO:
GO:0030672
GO:
GO:0032874
GO:
GO:0042692
GO:
GO:0045211
GO:
GO:0071526
MGI_trans_name:
Sema4c-001
Vega_translation:
178985
Vega_translation:
OTTMUSP00000022842
goslim_goa:
GO:0003674
goslim_goa:
GO:0005575
goslim_goa:
GO:0005576
goslim_goa:
GO:0005615
goslim_goa:
GO:0005622
goslim_goa:
GO:0005623
goslim_goa:
GO:0005737
goslim_goa:
GO:0005886
goslim_goa:
GO:0007165
goslim_goa:
GO:0008150
goslim_goa:
GO:0009790
goslim_goa:
GO:0016023
goslim_goa:
GO:0030154
goslim_goa:
GO:0040011
goslim_goa:
GO:0043226
goslim_goa:
GO:0048646
goslim_goa:
GO:0048856
goslim_goa:
GO:0048870
protein_id:
AAB35184.1
OTTP:
OTTMUSP00000022842
OTTT:
OTTMUST00000049349
UniParc:
UPI00000227E7
definition
note
: transcript_id=ENSMUST00000114991
protein_id
: ENSMUSP00000110643
translation
: MAPHWAVWLLAAGLWGLGIGAEMWWNLVPRKTVSSGELVTVVRRFSQTGIQDFLTLTLTEHSGLLYVGAREALFAFSVEALELQGAISWEAPAEKKIECTQKGKSNQTECFNFIRFLQPYNSSHLYVCGTYAFQPKCTYINMLTFTLDRAEFEDGKGKCPYDPAKGHTGLLVDGELYSATLNNFLGTEPVILRYMGTHHSIKTEYLAFWLNEPHFVGSAFVPESVGSFTGDDDKIYFFFSERAVEYDCYSEQVVARVARVCKGDMGGARTLQKKWTTFLKARLVCSAPDWKVYFNQLKAVHTLRGASWHNTTFFGVFQARWGDMDLSAVCEYQLEQIQQVFEGPYKEYSEQAQKWARYTDPVPSPRPGSCINNWHRDNGYTSSLELPDNTLNFIKKHPLMEDQVKPRLGRPLLVKKNTNFTHVVADRVPGLDGATYTVLFIGTGDGWLLKAVSLGPWIHMVEELQVFDQEPVESLVLSQSKKVLFAGSRSQLVQLSLADCTKYRFCVDCVLARDPYCAWNVNTSRCVATTSGRSGSFLVQHVANLDTSKMCNQYGIKKVRSIPKNITVVSGTDLVLPCHLSSNLAHAHWTFGSQDLPAEQPGSFLYDTGLQALVVMAAQSRHSGPYRCYSEEQGTRLAAESYLVAVVAGSSVTLEARAPLENLGLVWLAVVALGAVCLVLLLLVLSLRRRLREELEKGAKASERTLVYPLELPKEPASPPFRPGPETDEKLWDPVGYYYSDGSLKIVPGHARCQPGGGPPSPPPGIPGQPLPSPTRLHLGGGRNSNANGYVRLQLGGEDRGGSGHPLPELADELRRKLQQRQPLPDSNPEESSV
name
Sema4c (ENSMUSG00000026121)
(Detail)
type
CDS
link
VEGA
Ensembl
MGI
xref
Vega_transcript:
OTTMUST00000049353
Vega_transcript:
Sema4c-005
Uniprot/SPTREMBL:
A0A0A6YXK9
EMBL:
AC084391
GO:
GO:0005515
GO:
GO:0005615
GO:
GO:0032874
GO:
GO:0042692
MGI_trans_name:
Sema4c-005
Vega_translation:
178986
Vega_translation:
OTTMUSP00000022846
goslim_goa:
GO:0003674
goslim_goa:
GO:0005575
goslim_goa:
GO:0005576
goslim_goa:
GO:0005615
goslim_goa:
GO:0008150
goslim_goa:
GO:0030154
goslim_goa:
GO:0048856
OTTP:
OTTMUSP00000022846
OTTT:
OTTMUST00000049353
UniParc:
UPI0000F22056
definition
note
: transcript_id=ENSMUST00000193382
protein_id
: ENSMUSP00000142034
translation
: MAPHWAVWLLAAGLWGLGIGAEMWWNLVPRKTVSSGA
name
type
misc_feature
link
xref
definition
note
: contig AC084391.1 1..158328(-1)
Location
chromosome :
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
X
(Build: mm10)
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Annotation:
Gene
mRNA
CDS
genetic markers
Tracks
RefSeq genes :
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Gene, mRNA, CDS :
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MSM BAC end pairs :
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B6N BAC end pairs :
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MSMv4 :
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JF1v3 :
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KJRv1 :
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SWNv1 :
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CHDv1 :
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NJLv1 :
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BLG2v1 :
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HMIv1 :
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BFMv1 :
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PGNv1 :
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Click to browse alignment view.
BAC clone ordering.