VariantTable
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name
Aff3 (ENSMUSG00000037138)
type
gene
link
VEGA
Ensembl
MGI
xref
definition
locus_tag
: Aff3
note
: AF4/FMR2 family, member 3 [Source:MGI Symbol;Acc:MGI:106927]
name
Aff3 (ENSMUSG00000037138)
type
mRNA
link
VEGA
Ensembl
MGI
xref
definition
note
: transcript_id=ENSMUST00000095027
name
Aff3 (ENSMUSG00000037138)
type
mRNA
link
VEGA
Ensembl
MGI
xref
definition
note
: transcript_id=ENSMUST00000039827
name
Aff3 (ENSMUSG00000037138)
(Detail)
type
CDS
link
VEGA
Ensembl
MGI
xref
CCDS:
CCDS69884.1
RefSeq_peptide:
NP_001277743
RefSeq_mRNA:
NM_001290814.1
RefSeq_mRNA_predicted:
XM_006495740
RefSeq_mRNA_predicted:
XM_011238443.1
RefSeq_peptide_predicted:
XP_011236745.1
RefSeq_peptide_predicted:
XP_011236747.1
RefSeq_peptide_predicted:
XP_011236748.1
Vega_transcript:
Aff3-002
Vega_transcript:
OTTMUST00000047164
Uniprot/SPTREMBL:
D3YYI6
UCSC:uc007ast.2
EMBL:
AC117789
EMBL:
AC122026
EMBL:
AC132381
EMBL:
AC138386
GO:
GO:0003690
GO:
GO:0003690
GO:
GO:0003700
GO:
GO:0005634
GO:
GO:0005634
GO:
GO:0005654
GO:
GO:0005654
GO:
GO:0005737
GO:
GO:0005737
GO:
GO:0006351
GO:
GO:0006355
GO:
GO:0034612
GO:
GO:0034612
GO:
GO:0035116
GO:
GO:0035116
MGI_trans_name:
Aff3-002
Vega_translation:
179072
Vega_translation:
OTTMUSP00000021301
goslim_goa:
GO:0001071
goslim_goa:
GO:0003674
goslim_goa:
GO:0003677
goslim_goa:
GO:0005575
goslim_goa:
GO:0005622
goslim_goa:
GO:0005623
goslim_goa:
GO:0005634
goslim_goa:
GO:0005654
goslim_goa:
GO:0005737
goslim_goa:
GO:0008150
goslim_goa:
GO:0009058
goslim_goa:
GO:0009790
goslim_goa:
GO:0034641
goslim_goa:
GO:0043226
goslim_goa:
GO:0048856
OTTP:
OTTMUSP00000021301
OTTT:
OTTMUST00000047164
UniParc:
UPI0000F2205C
definition
note
: transcript_id=ENSMUST00000095027
protein_id
: ENSMUSP00000092637
translation
: MDSFDLALLQEWDLESLCVYEPDRNALRRKERERRSQETQQDSGSFNSGYSLFSEPYKTNKGDELSNRIQNTLGNYDEMKDFLTDRSNQSHLVGVPKPGVPQTPVNKIDEHFGAESRAQPQPSTVCSTASSTPAAVPVQQGKRGAMGWQKAGHPPSDGQQRAAQQGSLRTLLGDGVGRQQTRAKQVCNMETGLQTQERPPAMAAKHGGSGHCVQNFPPSLASKPSLVQQKPTAYVRPMDGQDQAPDESPKLKSSTETAVHCTAYRGVPANKPESARAKAKLAKFSIPKQAEESRSGENNSCVEEIIREMTWLPPLSAIQAPAKVEPSKFPFPNKDSQLVSSGHSNPKKADAEPGSPDNGASNTSTLEDDLKLSSDDEEGEQQAAQRTALRALADSSVVQQTNCRGSAPSSKGGGSSSSSGGSSSSSDSESTSGSDSETESSSSSSESEGSKPPHCSSPEAEPASSNKWQLDKWLNKVNPHKPPILIQNESHGPERNQYYTPPVKDEGQDCGKLPEICQASLRDKELKTTCKEEQRPRTANKAPGSKSVKQKSPPAAVAVTAAALPPAVPSAPTESAPAPTRRSAGKKPTRRTERTSAGDGANCHRPEEPVAPDTLGASVVGPLEPPKTRPCGNNRTGHRKELRSSVTCEKRRTRGLSRIVPKSKEFIETESSSSSSSSDSDLESEQEEYVLSKAPTTTGSEQRLKEAASSNNNSNSNSSTSRASVGSINARTTSDIAKELEEQFYTLVPFGRNELLSPLKDSDEVRSLWVKIDLTLLSRIPEHLSQEPGVLSAPSAKDTDSAPASHALDAPAEKTLPKSKRKRKCDNEDDYREIKKVQGRKESASRLAASTNNTLSGNHCNVNVNSLAIPINKNEKMLRSPTSPLSDTCKHKYASEDLTSSSRPHGNGLLTSASSNKEPKAESQLQTIAGDLTKASHNSSENGTLHSKSRPQTEPWSPGSNGHRDCKRQKLIFDDMPRSADYFMREAKRMKHKADAMVEKFGKALNYAEAALSFIECGNAMEQGPMESKSPYTMYSETVELIRYAMRLKTHSGPNATPEDKQLAALCYRCLALLYWRMFRLKRDHAVKYSKALIDYFKNSSKAAQAPSPWGSSGKSTGSPSPMSPNPSPASSVGSQGSLSSSSGLSPSTIVSIPQRIHQMAANHVSITNSILHSYDYWEMADNLAKENREFFNDLDLLMGPVTLHSSMEHLVQYSQQGLHWLRSSVHLS
name
Aff3 (ENSMUSG00000037138)
(Detail)
type
CDS
link
VEGA
Ensembl
MGI
xref
RefSeq_mRNA_predicted:
XM_006495737.2
RefSeq_mRNA_predicted:
XM_011238444.1
RefSeq_peptide_predicted:
XP_006495800.1
RefSeq_peptide_predicted:
XP_011236746.1
Uniprot/SPTREMBL:
F8WJA7
UCSC:uc007ast.2
EMBL:
AC117789
EMBL:
AC122026
EMBL:
AC132381
EMBL:
AC138386
GO:
GO:0003690
GO:
GO:0003700
GO:
GO:0005634
GO:
GO:0005654
GO:
GO:0005737
GO:
GO:0006351
GO:
GO:0006355
GO:
GO:0034612
GO:
GO:0035116
MGI_trans_name:
Aff3-201
goslim_goa:
GO:0001071
goslim_goa:
GO:0003674
goslim_goa:
GO:0003677
goslim_goa:
GO:0005575
goslim_goa:
GO:0005622
goslim_goa:
GO:0005623
goslim_goa:
GO:0005634
goslim_goa:
GO:0005654
goslim_goa:
GO:0005737
goslim_goa:
GO:0008150
goslim_goa:
GO:0009058
goslim_goa:
GO:0009790
goslim_goa:
GO:0034641
goslim_goa:
GO:0043226
goslim_goa:
GO:0048856
UniParc:
UPI0001661E2F
definition
note
: transcript_id=ENSMUST00000039827
protein_id
: ENSMUSP00000044128
translation
: MDSFDLALLQEWDLESLCVYEPDRNALRRKERERRSQETQQDSGSFNSGYSLFSEPYKTNKGDELSNRIQNTLGNYDEMKDFLTDRSNQSHLVGVPKPGVPQTPVNKIDEHFGAESRAQPQPSTVCSTASSTPAAVPVQQGKRGAMGWQKAGHPPSDGQQRAAQQGSLRTLLGDGVGRQQTRAKQVCNMETGLQTQERPPAMAAKHGGSGHCVQNFPPSLASKPSLVQQKPTAYVRPMDGQDQAPDESPKLKSSTETAVHCTAYRGVPANKPESARAKAKLAKFSIPKQAEESRSGENNSCVEEIIREMTWLPPLSAIQAPAKVEPSKFPFPNKDSQLVSSGHSNPKKADAEPGSPDNGASNTSTLEDDLKLSSDDEEGEQAAQRTALRALADSSVVQQTNCRGSAPSSKGGGSSSSSGGSSSSSDSESTSGSDSETESSSSSSESEGSKPPHCSSPEAEPASSNKWQLDKWLNKVNPHKPPILIQNESHGPERNQYYTPPVKDEGQDCGKLPEICQASLRDKELKTTCKEEQRPRTANKAPGSKSVKQKSPPAAVAVTAAALPPAVPSAPTESAPAPTRRSAGKKPTRRTERTSAGDGANCHRPEEPVAPDTLGASVVGPLEPPKTRPCGNNRTGHRKELRSSVTCEKRRTRGLSRIVPKSKEFIETESSSSSSSSDSDLESEQEEYVLSKAPTTTGSEQRLKEAASSNNNSNSNSSTSRASVGSINARTTSDIAKELEEQFYTLVPFGRNELLSPLKDSDEVRSLWVKIDLTLLSRIPEHLSQEPGVLSAPSAKDTDSAPASHALDAPAEKTLPKSKRKRKCDNEDDYREIKKVQGRKESASRLAASTNNTLSGNHCNVNVNSLAIPINKNEKMLRSPTSPLSDTCKHKYASEDLTSSSRPHGNGLLTSASSNKEPKAESQLQTIAGDLTKASHNSSENGTLHSKSRPQTEPWSPGSNGHRDCKRQKLIFDDMPRSADYFMREAKRMKHKADAMVEKFGKALNYAEAALSFIECGNAMEQGPMESKSPYTMYSETVELIRYAMRLKTHSGPNATPEDKQLAALCYRCLALLYWRMFRLKRDHAVKYSKALIDYFKNSSKAAQAPSPWGSSGKSTGSPSPMSPNPSPASSVGSQGSLSSSSGLSPSTIVSIPQRIHQMAANHVSITNSILHSYDYWEMADNLAKENREFFNDLDLLMGPVTLHSSMEHLVQYSQQGLHWLRSSVHLS
name
type
misc_feature
link
xref
definition
note
: contig AC117789.17 18547..180733(1)
name
Aff3 (ENSMUSG00000037138)
type
misc_RNA
link
VEGA
Ensembl
MGI
xref
Vega_transcript:
OTTMUST00000047163
Vega_transcript:
OTTMUST00000047163
MGI_trans_name:
Aff3-001
OTTT:
OTTMUST00000047163
definition
note
: processed_transcript
note
: transcript_id=ENSMUST00000027250
Location
chromosome :
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
X
(Build: mm10)
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Annotation:
Gene
mRNA
CDS
genetic markers
Tracks
RefSeq genes :
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show
Gene, mRNA, CDS :
not show
show
MSM BAC end pairs :
not show
show
B6N BAC end pairs :
not show
show
MSMv4 :
not show
show
JF1v3 :
not show
show
KJRv1 :
not show
show
SWNv1 :
not show
show
CHDv1 :
not show
show
NJLv1 :
not show
show
BLG2v1 :
not show
show
HMIv1 :
not show
show
BFMv1 :
not show
show
PGNv1 :
not show
show
Click to browse alignment view.
BAC clone ordering.