VariantTable
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cursor point :
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On read coverage region : Click to browse alignment view.
name
Sema4d (ENSMUSG00000021451)
type
gene
link
VEGA
Ensembl
MGI
xref
definition
locus_tag
: Sema4d
note
: sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4D [Source:MGI Symbol;Acc:MGI:109244]
name
Sema4d (ENSMUSG00000021451)
type
mRNA
link
VEGA
Ensembl
MGI
xref
definition
note
: transcript_id=ENSMUST00000110040
name
Sema4d (ENSMUSG00000021451)
type
mRNA
link
VEGA
Ensembl
MGI
xref
definition
note
: transcript_id=ENSMUST00000021900
name
Sema4d (ENSMUSG00000021451)
type
mRNA
link
VEGA
Ensembl
MGI
xref
definition
note
: transcript_id=ENSMUST00000110039
name
Sema4d (ENSMUSG00000021451)
(Detail)
type
CDS
link
VEGA
Ensembl
MGI
xref
CCDS:
CCDS26514.1
Uniprot/SWISSPROT:
O09126
RefSeq_peptide:
NP_001268809
RefSeq_mRNA:
NM_001281880.1
RefSeq_mRNA_predicted:
XM_006516886.2
RefSeq_peptide_predicted:
XP_006516948.1
RefSeq_peptide_predicted:
XP_006516949.1
RefSeq_peptide_predicted:
XP_006516950.1
RefSeq_peptide_predicted:
XP_006516951.1
Vega_transcript:
OTTMUST00000049521
Vega_transcript:
Sema4d-001
UCSC:uc007qmp.2
EMBL:
BC049780
EMBL:
CH466546
EMBL:
U69535
GO:
GO:0000122
GO:
GO:0001934
GO:
GO:0004872
GO:
GO:0004888
GO:
GO:0005102
GO:
GO:0005615
GO:
GO:0005887
GO:
GO:0007162
GO:
GO:0008360
GO:
GO:0010693
GO:
GO:0014068
GO:
GO:0016020
GO:
GO:0030215
GO:
GO:0030335
GO:
GO:0031344
GO:
GO:0043547
GO:
GO:0043931
GO:
GO:0045668
GO:
GO:0048672
GO:
GO:0048814
GO:
GO:0050731
GO:
GO:0050732
GO:
GO:0050772
GO:
GO:0070486
GO:
GO:0071526
GO:
GO:1900220
MGI_trans_name:
Sema4d-001
Vega_translation:
214460
Vega_translation:
OTTMUSP00000022963
goslim_goa:
GO:0003674
goslim_goa:
GO:0004871
goslim_goa:
GO:0005575
goslim_goa:
GO:0005576
goslim_goa:
GO:0005615
goslim_goa:
GO:0005623
goslim_goa:
GO:0005886
goslim_goa:
GO:0007155
goslim_goa:
GO:0007165
goslim_goa:
GO:0008150
goslim_goa:
GO:0021700
goslim_goa:
GO:0030154
goslim_goa:
GO:0048856
protein_id:
AAC52964.1
protein_id:
AAH49780.2
protein_id:
EDL41105.1
protein_id:
EDL41106.1
protein_id:
EDL41107.1
OTTP:
OTTMUSP00000022963
OTTT:
OTTMUST00000049521
Reactome:
R-MMU-1266738
Reactome:
R-MMU-373755
Reactome:
R-MMU-400685
Reactome:
R-MMU-416550
Reactome:
R-MMU-416572
Reactome:
R-MMU-416700
Reactome:
R-MMU-422475
UniParc:
UPI0000021BF6
definition
note
: transcript_id=ENSMUST00000110040
protein_id
: ENSMUSP00000105667
translation
: MRMCAPVRGLFLALVVVLRTAVAFAPVPRLTWEHGEVGLVQFHKPGIFNYSALLMSEDKDTLYVGAREAVFAVNALNISEKQHEVYWKVSEDKKSKCAEKGKSKQTECLNYIRVLQPLSSTSLYVCGTNAFQPTCDHLNLTSFKFLGKSEDGKGRCPFDPAHSYTSVMVGGELYSGTSYNFLGSEPIISRNSSHSPLRTEYAIPWLNEPSFVFADVIQKSPDGPEGEDDKVYFFFTEVSVEYEFVFKLMIPRVARVCKGDQGGLRTLQKKWTSFLKARLICSKPDSGLVFNILQDVFVLRAPGLKEPVFYAVFTPQLNNVGLSAVCAYTLATVEAVFSRGKYMQSATVEQSHTKWVRYNGPVPTPRPGACIDSEARAANYTSSLNLPDKTLQFVKDHPLMDDSVTPIDNRPKLIKKDVNYTQIVVDRTQALDGTFYDVMFISTDRGALHKAVILTKEVHVIEETQLFRDSEPVLTLLLSSKKGRKFVYAGSNSGVVQAPLAFCEKHGSCEDCVLARDPYCAWSPAIKACVTLHQEEASSRGWIQDMSGDTSSCLDKSKESFNQHFFKHGGTAELKCFQKSNLARVVWKFQNGELKAASPKYGFVGRKHLLIFNLSDGDSGVYQCLSEERVRNKTVSQLLAKHVLEVKMVPRTPPSPTSEDAQTEGSKITSKMPVASTQGSSPPTPALWATSPRAATLPPKSSSGTSCEPKMVINTVPQLHSEKTVYLKSSDNRLLMSLLLFIFVLFLCLFSYNCYKGYLPGQCLKFRSALLLGKKTPKSDFSDLEQSVKETLVEPGSFSQQNGDHPKPALDTGYETEQDTITSKVPTDREDSQRIDELSARDKPFDVKCELKFADSDADGD
name
Sema4d (ENSMUSG00000021451)
(Detail)
type
CDS
link
VEGA
Ensembl
MGI
xref
CCDS:
CCDS26514.1
Uniprot/SWISSPROT:
O09126
RefSeq_peptide:
NP_038688
RefSeq_mRNA:
NM_013660.4
RefSeq_mRNA_predicted:
XM_006516883.2
RefSeq_mRNA_predicted:
XM_006516884.2
RefSeq_peptide_predicted:
XP_006516946.1
RefSeq_peptide_predicted:
XP_006516947.1
RefSeq_peptide_predicted:
XP_006516948.1
RefSeq_peptide_predicted:
XP_006516950.1
RefSeq_peptide_predicted:
XP_006516951.1
Vega_transcript:
OTTMUST00000049522
Vega_transcript:
Sema4d-002
UCSC:uc007qmo.2
EMBL:
BC049780
EMBL:
CH466546
EMBL:
U69535
GO:
GO:0000122
GO:
GO:0000122
GO:
GO:0001934
GO:
GO:0001934
GO:
GO:0004872
GO:
GO:0004872
GO:
GO:0004888
GO:
GO:0004888
GO:
GO:0005102
GO:
GO:0005102
GO:
GO:0005615
GO:
GO:0005887
GO:
GO:0005887
GO:
GO:0007162
GO:
GO:0007162
GO:
GO:0008360
GO:
GO:0008360
GO:
GO:0010693
GO:
GO:0010693
GO:
GO:0014068
GO:
GO:0014068
GO:
GO:0016020
GO:
GO:0030215
GO:
GO:0030335
GO:
GO:0031344
GO:
GO:0031344
GO:
GO:0043547
GO:
GO:0043931
GO:
GO:0043931
GO:
GO:0045668
GO:
GO:0048672
GO:
GO:0048672
GO:
GO:0048814
GO:
GO:0048814
GO:
GO:0050731
GO:
GO:0050732
GO:
GO:0050772
GO:
GO:0070486
GO:
GO:0070486
GO:
GO:0071526
GO:
GO:0071526
GO:
GO:1900220
MGI_trans_name:
Sema4d-002
Vega_translation:
214461
Vega_translation:
OTTMUSP00000022964
goslim_goa:
GO:0003674
goslim_goa:
GO:0004871
goslim_goa:
GO:0005575
goslim_goa:
GO:0005576
goslim_goa:
GO:0005615
goslim_goa:
GO:0005623
goslim_goa:
GO:0005886
goslim_goa:
GO:0007155
goslim_goa:
GO:0007165
goslim_goa:
GO:0008150
goslim_goa:
GO:0021700
goslim_goa:
GO:0030154
goslim_goa:
GO:0048856
protein_id:
AAC52964.1
protein_id:
AAH49780.2
protein_id:
EDL41105.1
protein_id:
EDL41106.1
protein_id:
EDL41107.1
OTTP:
OTTMUSP00000022964
OTTT:
OTTMUST00000049522
Reactome:
R-MMU-1266738
Reactome:
R-MMU-373755
Reactome:
R-MMU-400685
Reactome:
R-MMU-416550
Reactome:
R-MMU-416572
Reactome:
R-MMU-416700
Reactome:
R-MMU-422475
UniParc:
UPI0000021BF6
definition
note
: transcript_id=ENSMUST00000021900
protein_id
: ENSMUSP00000021900
translation
: MRMCAPVRGLFLALVVVLRTAVAFAPVPRLTWEHGEVGLVQFHKPGIFNYSALLMSEDKDTLYVGAREAVFAVNALNISEKQHEVYWKVSEDKKSKCAEKGKSKQTECLNYIRVLQPLSSTSLYVCGTNAFQPTCDHLNLTSFKFLGKSEDGKGRCPFDPAHSYTSVMVGGELYSGTSYNFLGSEPIISRNSSHSPLRTEYAIPWLNEPSFVFADVIQKSPDGPEGEDDKVYFFFTEVSVEYEFVFKLMIPRVARVCKGDQGGLRTLQKKWTSFLKARLICSKPDSGLVFNILQDVFVLRAPGLKEPVFYAVFTPQLNNVGLSAVCAYTLATVEAVFSRGKYMQSATVEQSHTKWVRYNGPVPTPRPGACIDSEARAANYTSSLNLPDKTLQFVKDHPLMDDSVTPIDNRPKLIKKDVNYTQIVVDRTQALDGTFYDVMFISTDRGALHKAVILTKEVHVIEETQLFRDSEPVLTLLLSSKKGRKFVYAGSNSGVVQAPLAFCEKHGSCEDCVLARDPYCAWSPAIKACVTLHQEEASSRGWIQDMSGDTSSCLDKSKESFNQHFFKHGGTAELKCFQKSNLARVVWKFQNGELKAASPKYGFVGRKHLLIFNLSDGDSGVYQCLSEERVRNKTVSQLLAKHVLEVKMVPRTPPSPTSEDAQTEGSKITSKMPVASTQGSSPPTPALWATSPRAATLPPKSSSGTSCEPKMVINTVPQLHSEKTVYLKSSDNRLLMSLLLFIFVLFLCLFSYNCYKGYLPGQCLKFRSALLLGKKTPKSDFSDLEQSVKETLVEPGSFSQQNGDHPKPALDTGYETEQDTITSKVPTDREDSQRIDELSARDKPFDVKCELKFADSDADGD
name
Sema4d (ENSMUSG00000021451)
(Detail)
type
CDS
link
VEGA
Ensembl
MGI
xref
CCDS:
CCDS26514.1
Uniprot/SWISSPROT:
O09126
RefSeq_peptide_predicted:
XP_006516948.1
RefSeq_peptide_predicted:
XP_006516950.1
RefSeq_peptide_predicted:
XP_006516951.1
Vega_transcript:
OTTMUST00000049523
Vega_transcript:
Sema4d-003
UCSC:uc007qmn.2
EMBL:
BC049780
EMBL:
CH466546
EMBL:
U69535
GO:
GO:0000122
GO:
GO:0001934
GO:
GO:0004872
GO:
GO:0004888
GO:
GO:0005102
GO:
GO:0005615
GO:
GO:0005887
GO:
GO:0007162
GO:
GO:0008360
GO:
GO:0010693
GO:
GO:0014068
GO:
GO:0016020
GO:
GO:0030215
GO:
GO:0030335
GO:
GO:0031344
GO:
GO:0043547
GO:
GO:0043931
GO:
GO:0045668
GO:
GO:0048672
GO:
GO:0048814
GO:
GO:0050731
GO:
GO:0050732
GO:
GO:0050772
GO:
GO:0070486
GO:
GO:0071526
GO:
GO:1900220
MGI_trans_name:
Sema4d-003
Vega_translation:
214462
Vega_translation:
OTTMUSP00000022965
goslim_goa:
GO:0003674
goslim_goa:
GO:0004871
goslim_goa:
GO:0005575
goslim_goa:
GO:0005576
goslim_goa:
GO:0005615
goslim_goa:
GO:0005623
goslim_goa:
GO:0005886
goslim_goa:
GO:0007155
goslim_goa:
GO:0007165
goslim_goa:
GO:0008150
goslim_goa:
GO:0021700
goslim_goa:
GO:0030154
goslim_goa:
GO:0048856
protein_id:
AAC52964.1
protein_id:
AAH49780.2
protein_id:
EDL41105.1
protein_id:
EDL41106.1
protein_id:
EDL41107.1
OTTP:
OTTMUSP00000022965
OTTT:
OTTMUST00000049523
Reactome:
R-MMU-1266738
Reactome:
R-MMU-373755
Reactome:
R-MMU-400685
Reactome:
R-MMU-416550
Reactome:
R-MMU-416572
Reactome:
R-MMU-416700
Reactome:
R-MMU-422475
UniParc:
UPI0000021BF6
definition
note
: transcript_id=ENSMUST00000110039
protein_id
: ENSMUSP00000105666
translation
: MRMCAPVRGLFLALVVVLRTAVAFAPVPRLTWEHGEVGLVQFHKPGIFNYSALLMSEDKDTLYVGAREAVFAVNALNISEKQHEVYWKVSEDKKSKCAEKGKSKQTECLNYIRVLQPLSSTSLYVCGTNAFQPTCDHLNLTSFKFLGKSEDGKGRCPFDPAHSYTSVMVGGELYSGTSYNFLGSEPIISRNSSHSPLRTEYAIPWLNEPSFVFADVIQKSPDGPEGEDDKVYFFFTEVSVEYEFVFKLMIPRVARVCKGDQGGLRTLQKKWTSFLKARLICSKPDSGLVFNILQDVFVLRAPGLKEPVFYAVFTPQLNNVGLSAVCAYTLATVEAVFSRGKYMQSATVEQSHTKWVRYNGPVPTPRPGACIDSEARAANYTSSLNLPDKTLQFVKDHPLMDDSVTPIDNRPKLIKKDVNYTQIVVDRTQALDGTFYDVMFISTDRGALHKAVILTKEVHVIEETQLFRDSEPVLTLLLSSKKGRKFVYAGSNSGVVQAPLAFCEKHGSCEDCVLARDPYCAWSPAIKACVTLHQEEASSRGWIQDMSGDTSSCLDKSKESFNQHFFKHGGTAELKCFQKSNLARVVWKFQNGELKAASPKYGFVGRKHLLIFNLSDGDSGVYQCLSEERVRNKTVSQLLAKHVLEVKMVPRTPPSPTSEDAQTEGSKITSKMPVASTQGSSPPTPALWATSPRAATLPPKSSSGTSCEPKMVINTVPQLHSEKTVYLKSSDNRLLMSLLLFIFVLFLCLFSYNCYKGYLPGQCLKFRSALLLGKKTPKSDFSDLEQSVKETLVEPGSFSQQNGDHPKPALDTGYETEQDTITSKVPTDREDSQRIDELSARDKPFDVKCELKFADSDADGD
name
type
misc_feature
link
xref
definition
note
: contig AC126547.4 30663..181823(1)
Location
chromosome :
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
X
(Build: mm10)
view_point (b.p.) :
-
zoom in :
zoom out :
Picture width(pt) :
Colors
Annotation:
Gene
mRNA
CDS
genetic markers
Tracks
RefSeq genes :
not show
show
Gene, mRNA, CDS :
not show
show
MSM BAC end pairs :
not show
show
B6N BAC end pairs :
not show
show
MSMv4 :
not show
show
JF1v3 :
not show
show
KJRv1 :
not show
show
SWNv1 :
not show
show
CHDv1 :
not show
show
NJLv1 :
not show
show
BLG2v1 :
not show
show
HMIv1 :
not show
show
BFMv1 :
not show
show
PGNv1 :
not show
show
Click to browse alignment view.
BAC clone ordering.