VariantTable
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name
Cltb (ENSMUSG00000047547)
type
gene
link
VEGA
Ensembl
MGI
xref
definition
locus_tag
: Cltb
note
: clathrin, light polypeptide (Lcb) [Source:MGI Symbol;Acc:MGI:1921575]
name
Cltb (ENSMUSG00000047547)
type
mRNA
link
VEGA
Ensembl
MGI
xref
definition
note
: transcript_id=ENSMUST00000091609
name
Cltb (ENSMUSG00000047547)
type
mRNA
link
VEGA
Ensembl
MGI
xref
definition
note
: transcript_id=ENSMUST00000140142
name
Cltb (ENSMUSG00000047547)
type
mRNA
link
VEGA
Ensembl
MGI
xref
definition
note
: transcript_id=ENSMUST00000049575
name
Cltb (ENSMUSG00000047547)
(Detail)
type
CDS
link
VEGA
Ensembl
MGI
xref
CCDS:
CCDS26533.1
RefSeq_peptide:
NP_083146
RefSeq_mRNA:
NM_028870.3
Vega_transcript:
Cltb-001
Vega_transcript:
OTTMUST00000081304
Uniprot/SPTREMBL:
Q3TWZ9
UCSC:uc007qom.1
Fantom:
I420020N05
Fantom:
I920061D20
EMBL:
AK146816
EMBL:
AK159480
GO:
GO:0005515
GO:
GO:0005737
GO:
GO:0005886
GO:
GO:0030118
GO:
GO:0042277
GO:
GO:0043231
MGI_trans_name:
Cltb-001
Vega_translation:
214496
Vega_translation:
OTTMUSP00000043470
protein_id:
BAE27455.1
protein_id:
BAE35117.1
OTTP:
OTTMUSP00000043470
OTTT:
OTTMUST00000081304
UniParc:
UPI00000E91C3
definition
note
: transcript_id=ENSMUST00000091609
protein_id
: ENSMUSP00000089198
translation
: MAEDFGFFSSSESGAPEAAEEDPAAAFLAQQESEIAGIENDPGFGAPAASQVASAQPGLASGAGSEDMSTTVNGDVFQEANGPADGYAAIAQADRLTQEPESIRKWREEQKKRLQELDAASKVTEQEWREKAKKDLEEWNQRQSEQVEKNKINNRASEEAFVKESKEETPGTEWEKVAQLCDFNPKSSKQCKDVSRLRSVLMSLKQTPLSR
name
Cltb (ENSMUSG00000047547)
(Detail)
type
CDS
link
VEGA
Ensembl
MGI
xref
Vega_transcript:
Cltb-004
Vega_transcript:
OTTMUST00000081307
Uniprot/SPTREMBL:
F7BHJ0
EMBL:
AC155262
GO:
GO:0005198
GO:
GO:0005737
GO:
GO:0005802
GO:
GO:0005886
GO:
GO:0006886
GO:
GO:0008150
GO:
GO:0030125
GO:
GO:0030130
GO:
GO:0030132
GO:
GO:0032050
GO:
GO:0043231
GO:
GO:0060170
GO:
GO:0072583
MGI_trans_name:
Cltb-004
Vega_translation:
214497
Vega_translation:
OTTMUSP00000043472
goslim_goa:
GO:0003674
goslim_goa:
GO:0005198
goslim_goa:
GO:0005575
goslim_goa:
GO:0005622
goslim_goa:
GO:0005623
goslim_goa:
GO:0005737
goslim_goa:
GO:0005794
goslim_goa:
GO:0005886
goslim_goa:
GO:0005929
goslim_goa:
GO:0006810
goslim_goa:
GO:0008150
goslim_goa:
GO:0016023
goslim_goa:
GO:0016192
goslim_goa:
GO:0043226
goslim_goa:
GO:0043234
OTTP:
OTTMUSP00000043472
OTTT:
OTTMUST00000081307
UniParc:
UPI0001889CEA
definition
note
: transcript_id=ENSMUST00000140142
protein_id
: ENSMUSP00000122336
translation
: EANGPADGYAAIAQADRLTQEPESIRKWREEQKKRLQELDAASKVTEQEWREKAKKDLEEWNQRQSEQVEKNKINNSKHHCPARCPSRERPRSTWALLGQRSSCFRQSGTSSGSCHTQPVLFL
name
Cltb (ENSMUSG00000047547)
(Detail)
type
CDS
link
VEGA
Ensembl
MGI
xref
Uniprot/SWISSPROT:
Q6IRU5
RefSeq_peptide_predicted:
XP_006517481.1
Vega_transcript:
Cltb-003
Vega_transcript:
OTTMUST00000081306
UCSC:uc007qon.1
Fantom:
2310046E19
Fantom:
4833419E16
Fantom:
B230331K14
EMBL:
AK009844
EMBL:
AK029382
EMBL:
AK045989
EMBL:
BC070404
GO:
GO:0005198
GO:
GO:0005737
GO:
GO:0005802
GO:
GO:0005886
GO:
GO:0006886
GO:
GO:0008150
GO:
GO:0030118
GO:
GO:0030125
GO:
GO:0030130
GO:
GO:0030132
GO:
GO:0032050
GO:
GO:0043231
GO:
GO:0060170
GO:
GO:0072583
MGI_trans_name:
Cltb-003
Vega_translation:
214498
Vega_translation:
OTTMUSP00000043471
goslim_goa:
GO:0003674
goslim_goa:
GO:0005198
goslim_goa:
GO:0005575
goslim_goa:
GO:0005622
goslim_goa:
GO:0005623
goslim_goa:
GO:0005737
goslim_goa:
GO:0005794
goslim_goa:
GO:0005886
goslim_goa:
GO:0005929
goslim_goa:
GO:0006810
goslim_goa:
GO:0008150
goslim_goa:
GO:0016023
goslim_goa:
GO:0016192
goslim_goa:
GO:0043226
goslim_goa:
GO:0043234
protein_id:
AAH70404.1
protein_id:
BAB26539.1
protein_id:
BAC26430.1
protein_id:
BAC32563.1
OTTP:
OTTMUSP00000043471
OTTT:
OTTMUST00000081306
Reactome:
R-MMU-157858
Reactome:
R-MMU-162582
Reactome:
R-MMU-190828
Reactome:
R-MMU-190873
Reactome:
R-MMU-195721
Reactome:
R-MMU-196025
Reactome:
R-MMU-199991
Reactome:
R-MMU-199992
Reactome:
R-MMU-3858494
Reactome:
R-MMU-4086400
Reactome:
R-MMU-421837
Reactome:
R-MMU-432720
Reactome:
R-MMU-5099900
Reactome:
R-MMU-5653656
UniParc:
UPI000024ECA2
definition
note
: transcript_id=ENSMUST00000049575
protein_id
: ENSMUSP00000053371
translation
: MAEDFGFFSSSESGAPEAAEEDPAAAFLAQQESEIAGIENDPGFGAPAASQVASAQPGLASGAGSEDMSTTVNGDVFQEANGPADGYAAIAQADRLTQEPESIRKWREEQKKRLQELDAASKVTEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKAFYQQPDADTIGYVASEEAFVKESKEETPGTEWEKVAQLCDFNPKSSKQCKDVSRLRSVLMSLKQTPLSR
name
type
misc_feature
link
xref
definition
note
: contig AC155262.2 75073..168429(1)
name
Cltb (ENSMUSG00000047547)
type
misc_RNA
link
VEGA
Ensembl
MGI
xref
Vega_transcript:
OTTMUST00000081305
Vega_transcript:
OTTMUST00000081305
MGI_trans_name:
Cltb-002
OTTT:
OTTMUST00000081305
definition
note
: retained_intron
note
: transcript_id=ENSMUST00000146301
Location
chromosome :
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
X
(Build: mm10)
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Colors
Annotation:
Gene
mRNA
CDS
genetic markers
Tracks
RefSeq genes :
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Gene, mRNA, CDS :
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show
MSM BAC end pairs :
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show
B6N BAC end pairs :
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show
MSMv4 :
not show
show
JF1v3 :
not show
show
KJRv1 :
not show
show
SWNv1 :
not show
show
CHDv1 :
not show
show
NJLv1 :
not show
show
BLG2v1 :
not show
show
HMIv1 :
not show
show
BFMv1 :
not show
show
PGNv1 :
not show
show
Click to browse alignment view.
BAC clone ordering.