VariantTable
SequenceCutter
Homology
search
Download
Updated genome
information
Help
& Docs
Previous ver
(NIG_MoG data)
Tutorials are available here.
Search for genomic variation
Search for mouse strain
BAC clone ordering.
cursor point :
On scale region : Click two point for zoom in view region.
On read coverage region : Click to browse alignment view.
name
Rnf44 (ENSMUSG00000034928)
type
gene
link
VEGA
Ensembl
MGI
xref
definition
locus_tag
: Rnf44
note
: ring finger protein 44 [Source:MGI Symbol;Acc:MGI:2145310]
name
Rnf44 (ENSMUSG00000034928)
type
mRNA
link
VEGA
Ensembl
MGI
xref
definition
note
: transcript_id=ENSMUST00000177950
name
Rnf44 (ENSMUSG00000034928)
type
mRNA
link
VEGA
Ensembl
MGI
xref
definition
note
: transcript_id=ENSMUST00000125871
name
Rnf44 (ENSMUSG00000034928)
type
mRNA
link
VEGA
Ensembl
MGI
xref
definition
note
: transcript_id=ENSMUST00000037422
name
Rnf44 (ENSMUSG00000034928)
type
mRNA
link
VEGA
Ensembl
MGI
xref
definition
note
: transcript_id=ENSMUST00000134862
name
Rnf44 (ENSMUSG00000034928)
type
mRNA
link
VEGA
Ensembl
MGI
xref
definition
note
: transcript_id=ENSMUST00000150806
name
Rnf44 (ENSMUSG00000034928)
type
mRNA
link
VEGA
Ensembl
MGI
xref
definition
note
: transcript_id=ENSMUST00000128257
name
Rnf44 (ENSMUSG00000034928)
type
mRNA
link
VEGA
Ensembl
MGI
xref
definition
note
: transcript_id=ENSMUST00000126717
name
Rnf44 (ENSMUSG00000034928)
type
mRNA
link
VEGA
Ensembl
MGI
xref
definition
note
: transcript_id=ENSMUST00000129881
name
Rnf44 (ENSMUSG00000034928)
type
mRNA
link
VEGA
Ensembl
MGI
xref
definition
note
: transcript_id=ENSMUST00000125927
name
Rnf44 (ENSMUSG00000034928)
type
mRNA
link
VEGA
Ensembl
MGI
xref
definition
note
: transcript_id=ENSMUST00000122935
name
Rnf44 (ENSMUSG00000034928)
(Detail)
type
CDS
link
VEGA
Ensembl
MGI
xref
CCDS:
CCDS49266.1
Uniprot/SWISSPROT:
Q3UHJ8
RefSeq_peptide:
NP_598825
RefSeq_mRNA:
NM_134064.2
RefSeq_mRNA_predicted:
XM_011244449.1
RefSeq_mRNA_predicted:
XM_011244450.1
RefSeq_mRNA_predicted:
XM_011244451.1
RefSeq_peptide_predicted:
XP_011242751.1
RefSeq_peptide_predicted:
XP_011242752.1
RefSeq_peptide_predicted:
XP_011242753.1
UCSC:uc007qot.2
GO:
GO:0003674
GO:
GO:0005575
GO:
GO:0008150
GO:
GO:0008270
MGI_trans_name:
Rnf44-201
goslim_goa:
GO:0003674
goslim_goa:
GO:0043167
UniParc:
UPI00005AD397
definition
note
: transcript_id=ENSMUST00000177950
protein_id
: ENSMUSP00000136732
translation
: MLHPATQQSPFMVDLHEQVHQGPVPLSYTVTTVTTQGFPLPTSQHIPGCSAQQLPACSVMFSGQHYPLCCLPPPLIQACTMQQLPGPYHTYPHLISSDHYILHPPPPAPPPQPTHMAPLGQFVSLQTQHPRMPLQRLDNEMDLRGDQHPLGSFTYSTSATGPALSPSVPLHYLPHDPLHQELSFGVPYSHMMPRRLSTQRYRLQQPLPPPPPPPPPSYYPSFLPYFLSMLPMSPTTVGPTISLDLDVDDVEMENYEALLNLAERLGDAKPRGLTKADIEQLPSYRFNPDSHQSEQTLCVVCFSDFEVRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADASEVPREAE
name
Rnf44 (ENSMUSG00000034928)
(Detail)
type
CDS
link
VEGA
Ensembl
MGI
xref
CCDS:
CCDS49268.1
RefSeq_peptide:
NP_001139497
RefSeq_peptide:
NP_001139498.1
RefSeq_mRNA:
NM_001146025.1
RefSeq_mRNA:
NM_001146026.1
RefSeq_mRNA_predicted:
XM_006517018
RefSeq_mRNA_predicted:
XM_006517019
RefSeq_peptide_predicted:
XP_006517081.1
RefSeq_peptide_predicted:
XP_006517082.1
RefSeq_peptide_predicted:
XP_006517083.1
RefSeq_peptide_predicted:
XP_011242748.1
RefSeq_peptide_predicted:
XP_011242749.1
Vega_transcript:
OTTMUST00000081275
Vega_transcript:
Rnf44-001
Uniprot/SPTREMBL:
E9PUC0
UCSC:uc007qov.2
EMBL:
AC162526
GO:
GO:0003674
GO:
GO:0005575
GO:
GO:0008150
GO:
GO:0008270
MGI_trans_name:
Rnf44-001
Vega_translation:
214506
Vega_translation:
OTTMUSP00000043447
goslim_goa:
GO:0003674
goslim_goa:
GO:0005575
goslim_goa:
GO:0008150
goslim_goa:
GO:0043167
OTTP:
OTTMUSP00000043447
OTTT:
OTTMUST00000081275
UniParc:
UPI0001889CEF
definition
note
: transcript_id=ENSMUST00000125871
protein_id
: ENSMUSP00000118474
translation
: MRPWTLAVTKWPPSAPVGHWRVSTRLSSSPGQLWGSLGHEGPLVSPPAQDERLPSQQLLPRPSNLSVEEHRASAPAGRSPRMLHPATQQSPFMVDLHEQVHQGPVPLSYTVTTVTTQGFPLPTSQHIPGCSAQQLPACSVMFSGQHYPLCCLPPPQLIQACTMQQLPGPYHTYPHLISSDHYILHPPPPAPPPQPTHMAPLGQFVSLQTQHPRMPLQRLDNEMDLRGDQHPLGSFTYSTSATGPALSPSVPLHYLPHDPLHQELSFGVPYSHMMPRRLSTQRYRLQQPLPPPPPPPPPSYYPSFLPYFLSMLPMSPTTVGPTISLDLDVDDVEMENYEALLNLAERLGDAKPRGLTKADIEQLPSYRFNPDSHQSEQTLCVVCFSDFEVRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADASEVPREAE
name
Rnf44 (ENSMUSG00000034928)
(Detail)
type
CDS
link
VEGA
Ensembl
MGI
xref
CCDS:
CCDS49266.1
Uniprot/SWISSPROT:
Q3UHJ8
Vega_transcript:
OTTMUST00000081277
Vega_transcript:
Rnf44-003
UCSC:uc007qox.3
GO:
GO:0003674
GO:
GO:0005575
GO:
GO:0008150
GO:
GO:0008270
MGI_trans_name:
Rnf44-003
Vega_translation:
214507
Vega_translation:
OTTMUSP00000043449
goslim_goa:
GO:0003674
goslim_goa:
GO:0043167
OTTP:
OTTMUSP00000043449
OTTT:
OTTMUST00000081277
UniParc:
UPI00005AD397
definition
note
: transcript_id=ENSMUST00000037422
protein_id
: ENSMUSP00000043974
translation
: MLHPATQQSPFMVDLHEQVHQGPVPLSYTVTTVTTQGFPLPTSQHIPGCSAQQLPACSVMFSGQHYPLCCLPPPLIQACTMQQLPGPYHTYPHLISSDHYILHPPPPAPPPQPTHMAPLGQFVSLQTQHPRMPLQRLDNEMDLRGDQHPLGSFTYSTSATGPALSPSVPLHYLPHDPLHQELSFGVPYSHMMPRRLSTQRYRLQQPLPPPPPPPPPSYYPSFLPYFLSMLPMSPTTVGPTISLDLDVDDVEMENYEALLNLAERLGDAKPRGLTKADIEQLPSYRFNPDSHQSEQTLCVVCFSDFEVRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADASEVPREAE
name
Rnf44 (ENSMUSG00000034928)
(Detail)
type
CDS
link
VEGA
Ensembl
MGI
xref
CCDS:
CCDS49267.1
Uniprot/SWISSPROT:
Q3UHJ8
RefSeq_mRNA_predicted:
XM_011244448.1
RefSeq_peptide_predicted:
XP_011242750.1
Vega_transcript:
OTTMUST00000081276
Vega_transcript:
Rnf44-002
UCSC:uc007qox.3
GO:
GO:0003674
GO:
GO:0005575
GO:
GO:0008150
GO:
GO:0008270
MGI_trans_name:
Rnf44-002
Vega_translation:
214508
Vega_translation:
OTTMUSP00000043448
goslim_goa:
GO:0003674
goslim_goa:
GO:0043167
OTTP:
OTTMUSP00000043448
OTTT:
OTTMUST00000081276
UniParc:
UPI00005B2861
definition
note
: transcript_id=ENSMUST00000134862
protein_id
: ENSMUSP00000114259
translation
: MLHPATQQSPFMVDLHEQVHQGPVPLSYTVTTVTTQGFPLPTSQHIPGCSAQQLPACSVMFSGQHYPLCCLPPPQLIQACTMQQLPGPYHTYPHLISSDHYILHPPPPAPPPQPTHMAPLGQFVSLQTQHPRMPLQRLDNEMDLRGDQHPLGSFTYSTSATGPALSPSVPLHYLPHDPLHQELSFGVPYSHMMPRRLSTQRYRLQQPLPPPPPPPPPSYYPSFLPYFLSMLPMSPTTVGPTISLDLDVDDVEMENYEALLNLAERLGDAKPRGLTKADIEQLPSYRFNPDSHQSEQTLCVVCFSDFEVRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADASEVPREAE
name
Rnf44 (ENSMUSG00000034928)
(Detail)
type
CDS
link
VEGA
Ensembl
MGI
xref
CCDS:
CCDS49267.1
Uniprot/SWISSPROT:
Q3UHJ8
RefSeq_peptide:
NP_001139499
RefSeq_mRNA:
NM_001146027.1
Vega_transcript:
OTTMUST00000081278
Vega_transcript:
Rnf44-004
UCSC:uc007qow.2
GO:
GO:0003674
GO:
GO:0005575
GO:
GO:0008150
GO:
GO:0008270
MGI_trans_name:
Rnf44-004
Vega_translation:
214509
Vega_translation:
OTTMUSP00000043450
goslim_goa:
GO:0003674
goslim_goa:
GO:0043167
OTTP:
OTTMUSP00000043450
OTTT:
OTTMUST00000081278
UniParc:
UPI00005B2861
definition
note
: transcript_id=ENSMUST00000150806
protein_id
: ENSMUSP00000123198
translation
: MLHPATQQSPFMVDLHEQVHQGPVPLSYTVTTVTTQGFPLPTSQHIPGCSAQQLPACSVMFSGQHYPLCCLPPPQLIQACTMQQLPGPYHTYPHLISSDHYILHPPPPAPPPQPTHMAPLGQFVSLQTQHPRMPLQRLDNEMDLRGDQHPLGSFTYSTSATGPALSPSVPLHYLPHDPLHQELSFGVPYSHMMPRRLSTQRYRLQQPLPPPPPPPPPSYYPSFLPYFLSMLPMSPTTVGPTISLDLDVDDVEMENYEALLNLAERLGDAKPRGLTKADIEQLPSYRFNPDSHQSEQTLCVVCFSDFEVRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADASEVPREAE
name
Rnf44 (ENSMUSG00000034928)
(Detail)
type
CDS
link
VEGA
Ensembl
MGI
xref
CCDS:
CCDS49266.1
Uniprot/SWISSPROT:
Q3UHJ8
Vega_transcript:
OTTMUST00000081279
Vega_transcript:
Rnf44-005
UCSC:uc007qow.2
GO:
GO:0003674
GO:
GO:0005575
GO:
GO:0008150
GO:
GO:0008270
MGI_trans_name:
Rnf44-005
Vega_translation:
214510
Vega_translation:
OTTMUSP00000043451
goslim_goa:
GO:0003674
goslim_goa:
GO:0043167
OTTP:
OTTMUSP00000043451
OTTT:
OTTMUST00000081279
UniParc:
UPI00005AD397
definition
note
: transcript_id=ENSMUST00000128257
protein_id
: ENSMUSP00000116850
translation
: MLHPATQQSPFMVDLHEQVHQGPVPLSYTVTTVTTQGFPLPTSQHIPGCSAQQLPACSVMFSGQHYPLCCLPPPLIQACTMQQLPGPYHTYPHLISSDHYILHPPPPAPPPQPTHMAPLGQFVSLQTQHPRMPLQRLDNEMDLRGDQHPLGSFTYSTSATGPALSPSVPLHYLPHDPLHQELSFGVPYSHMMPRRLSTQRYRLQQPLPPPPPPPPPSYYPSFLPYFLSMLPMSPTTVGPTISLDLDVDDVEMENYEALLNLAERLGDAKPRGLTKADIEQLPSYRFNPDSHQSEQTLCVVCFSDFEVRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADASEVPREAE
name
Rnf44 (ENSMUSG00000034928)
(Detail)
type
CDS
link
VEGA
Ensembl
MGI
xref
Vega_transcript:
OTTMUST00000081280
Vega_transcript:
Rnf44-006
Uniprot/SPTREMBL:
D3Z721
EMBL:
AC162526
GO:
GO:0003674
GO:
GO:0005575
GO:
GO:0008150
MGI_trans_name:
Rnf44-006
Vega_translation:
214511
Vega_translation:
OTTMUSP00000043452
goslim_goa:
GO:0003674
goslim_goa:
GO:0005575
goslim_goa:
GO:0008150
OTTP:
OTTMUSP00000043452
OTTT:
OTTMUST00000081280
UniParc:
UPI0001889CF7
definition
note
: transcript_id=ENSMUST00000126717
protein_id
: ENSMUSP00000116043
translation
: MRPWTLAVTKWPPSAPVGHWRVSTRLSSSPGQLWGSLGHEGPLVSPPAQDERLPSQQLLPRPSNLSVEEHRASAPAGRSPRMLHPATQQSPFMVDLHEQVHQGPVPLSYTVTTVTTQGFPLPTSQHIPGCSAQQLPACSVMFSGQHYPLCCLPPPLIQACTMQQLPGPYHTYPHLISSDHYILHPPPPAPPPQPTHMAPLGQFVSLQTQH
name
Rnf44 (ENSMUSG00000034928)
(Detail)
type
CDS
link
VEGA
Ensembl
MGI
xref
Vega_transcript:
OTTMUST00000081284
Vega_transcript:
Rnf44-010
Uniprot/SPTREMBL:
D3Z7N0
EMBL:
AC162526
GO:
GO:0003674
GO:
GO:0005575
GO:
GO:0008150
MGI_trans_name:
Rnf44-010
Vega_translation:
214512
Vega_translation:
OTTMUSP00000043455
goslim_goa:
GO:0003674
goslim_goa:
GO:0005575
goslim_goa:
GO:0008150
OTTP:
OTTMUSP00000043455
OTTT:
OTTMUST00000081284
UniParc:
UPI0001889CFA
definition
note
: transcript_id=ENSMUST00000129881
protein_id
: ENSMUSP00000122161
translation
: MLHPATQQSPFMVDLHEQVHQGPVPLSYTVTTVTTQGFPLPTSQHIPGCSAQQLPACSVMFSGQHYPLCCLPPPLIQACTMQQLPGPYHTYPHLISSDHYILH
name
Rnf44 (ENSMUSG00000034928)
(Detail)
type
CDS
link
VEGA
Ensembl
MGI
xref
Vega_transcript:
OTTMUST00000081281
Vega_transcript:
Rnf44-007
Uniprot/SPTREMBL:
D3Z6V1
EMBL:
AC162526
GO:
GO:0003674
GO:
GO:0005575
GO:
GO:0008150
MGI_trans_name:
Rnf44-007
Vega_translation:
214513
Vega_translation:
OTTMUSP00000043453
goslim_goa:
GO:0003674
goslim_goa:
GO:0005575
goslim_goa:
GO:0008150
OTTP:
OTTMUSP00000043453
OTTT:
OTTMUST00000081281
UniParc:
UPI0001889CF8
definition
note
: transcript_id=ENSMUST00000125927
protein_id
: ENSMUSP00000122292
translation
: MRPWTLAVTKWPPSAPVGHWRVSTRLSSSPGQLWGSLGHEGPLVSPPAQDERLPSQQLLPRPSNLSVEEHRASAPAGRSPRMLHPATQQSPFMVDLHEQVHQGPVPLSYTVTTVTTQGFPLPTSQHIPGCSAQQLPACSVMFSGQHYPLC
name
Rnf44 (ENSMUSG00000034928)
(Detail)
type
CDS
link
VEGA
Ensembl
MGI
xref
Vega_transcript:
OTTMUST00000081287
Vega_transcript:
Rnf44-013
Uniprot/SPTREMBL:
D3Z6D0
EMBL:
AC162526
GO:
GO:0003674
GO:
GO:0005575
GO:
GO:0008150
MGI_trans_name:
Rnf44-013
Vega_translation:
214514
Vega_translation:
OTTMUSP00000043458
goslim_goa:
GO:0003674
goslim_goa:
GO:0005575
goslim_goa:
GO:0008150
OTTP:
OTTMUSP00000043458
OTTT:
OTTMUST00000081287
UniParc:
UPI0001889CFD
definition
note
: transcript_id=ENSMUST00000122935
protein_id
: ENSMUSP00000117050
translation
: MLHPATQQSPFMVDLHEQVHQGPVPLSYTVTTVTTQG
name
type
misc_feature
link
xref
definition
note
: contig AC162526.3 61529..219418(1)
name
Rnf44 (ENSMUSG00000034928)
type
misc_RNA
link
VEGA
Ensembl
MGI
xref
Vega_transcript:
OTTMUST00000081291
Vega_transcript:
OTTMUST00000081291
MGI_trans_name:
Rnf44-017
OTTT:
OTTMUST00000081291
definition
note
: retained_intron
note
: transcript_id=ENSMUST00000145215
name
Rnf44 (ENSMUSG00000034928)
type
misc_RNA
link
VEGA
Ensembl
MGI
xref
Vega_transcript:
OTTMUST00000081290
Vega_transcript:
OTTMUST00000081290
MGI_trans_name:
Rnf44-016
OTTT:
OTTMUST00000081290
definition
note
: retained_intron
note
: transcript_id=ENSMUST00000128038
Location
chromosome :
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
X
(Build: mm10)
view_point (b.p.) :
-
zoom in :
zoom out :
Picture width(pt) :
Colors
Annotation:
Gene
mRNA
CDS
genetic markers
Tracks
RefSeq genes :
not show
show
Gene, mRNA, CDS :
not show
show
MSM BAC end pairs :
not show
show
B6N BAC end pairs :
not show
show
MSMv4 :
not show
show
JF1v3 :
not show
show
KJRv1 :
not show
show
SWNv1 :
not show
show
CHDv1 :
not show
show
NJLv1 :
not show
show
BLG2v1 :
not show
show
HMIv1 :
not show
show
BFMv1 :
not show
show
PGNv1 :
not show
show
Click to browse alignment view.