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Target CDS Information

Gene Symbol (Gene ID) Ankrd23 (ENSMUSG00000067653)
Cross Reference
CCDS CCDS14882.1
EMBL AF492400, BC132370, BC138797, ...show all
GO GO:0005634, GO:0005654, GO:0005737, ...show all
goslim_goa GO:0003674, GO:0005575, GO:0005622, ...show all
MGI_trans_name Ankrd23-003
OTTP OTTMUSP00000068600
OTTT OTTMUST00000126921
protein_id AAI32371.1, AAI38798.1, AAO24066.1, ...show all
RefSeq_mRNA NM_153502.3
RefSeq_peptide NP_705722
UCSC uc007aql.1
UniParc UPI0000003702
Uniprot/SPTREMBL A2RT50
Uniprot/SWISSPROT Q812A3
Vega_transcript Ankrd23-003, OTTMUST00000126921
Vega_translation 178976, OTTMUSP00000068600
Definition protein_id:ENSMUSP00000061168
translation:
MDFISIEQLVSGERVDRKALEFGRGVPDPGGWPSGWTLGPQEAVAREKLKLEEEKRKKLE
RFNSSRLTLDNLTDLENLVQRRRKKRQRHKVPPREPESGAEPQPQVPLEPVGLEMFLKAA
AENQEALIDKYLADGGDPNAHDKLHRTALHWACLKGHRQLVNKLLAAGAAIEVRDLLDRT
PVFWACRGGHLDILKRLLNQGAQVNAQDKIWSTPLHVAVRMGHSDCLEHLIECGAHINAQ
DKEGDTALHEAVRYGHHKATKLLLLYGAKLGVKNVASQTPVQLARDWQRGIRDALQAHVG
HPRTRC

Chromosome 1
Length
Position(start - end)
4161
36531546 - 36535708
Orient to Chromosome minus
Link Location : (1:36531546-36535708)
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Detail Map


 

Report

Polymorphisms Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Ankrd23 (ENSMUSG00000067653)
Transcript ID ENSMUST00000054665
Reports
substitution
cSNPs1
Insertion9
Deletion13
SNPs
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
Insertions
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
Deletions
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
coding sequence substitutions
premature termination by the nucleotide substitution0
synonymous num0
non-synonymous num1
synonymous substitutions
non-synonymous substitutions 36534418 (p.Asp16Ala),
B6 transcript
(ENSMUST00000054665)
MDFISIEQLVSGERVDRKALEFGRGVPDPGGWPSGWTLGPQEAVAREKLKLEEEKRKKLE
RFNSSRLTLDNLTDLENLVQRRRKKRQRHKVPPREPESGAEPQPQVPLEPVGLEMFLKAA
AENQEALIDKYLADGGDPNAHDKLHRTALHWACLKGHRQLVNKLLAAGAAIEVRDLLDRT
PVFWACRGGHLDILKRLLNQGAQVNAQDKIWSTPLHVAVRMGHSDCLEHLIECGAHINAQ
DKEGDTALHEAVRYGHHKATKLLLLYGAKLGVKNVASQTPVQLARDWQRGIRDALQAHVG
HPRTRC*
MSMv4 transcript
MDFISIEQLVSGERVARKALEFGRGVPDPGGWPSGWTLGPQEAVAREKLKLEEEKRKKLE
RFNSSRLTLDNLTDLENLVQRRRKKRQRHKVPPREPESGAEPQPQVPLEPVGLEMFLKAA
AENQEALIDKYLADGGDPNAHDKLHRTALHWACLKGHRQLVNKLLAAGAAIEVRDLLDRT
PVFWACRGGHLDILKRLLNQGAQVNAQDKIWSTPLHVAVRMGHSDCLEHLIECGAHINAQ
DKEGDTALHEAVRYGHHKATKLLLLYGAKLGVKNVASQTPVQLARDWQRGIRDALQAHVG
HPRTRC*
homology99.67 (307 / 307)

Exon Detail Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Ankrd23 (ENSMUSG00000067653)
Transcript ID ENSMUST00000054665
No. Exon / Intron Start End Start Phase End Phase Length Sequence
5' upstream sequence
..........TCCTCATCACCAAGGGTGTTTTTGCAGGGCCAGCATACCCAGGCCGCTTT
AAAAAGCACACTGCTGACCCTCCATGGTCTTCAGTCCTTTTAGCCACCCCTCCCCTCGAG
CTTACATGGTCATCTCTGTTGATGCTGCCTGTGCAAGAATCTTGTTTACTGGGTATCTGA
TTTCCTCTCAAAGGTCACGCTGGAGTTCAGGGCACAGCGGAGTGAAAAGCATTCCTGGCT
TCTCAAGAATTAGGTATTTGATTTTTGTTGGCTAAAAACAGTTTGCTTCGTGGCTGGCCG
TCATGGCTATTGACAGACCGAGCAAGACCTGGAGCAGGTCTCCGTCCCCTTGCCCTGTTG
AAGGGCATGCTTCATGCCCAGAGAGTATCTGATGTGGACCTGGAAGGCTCCTTCAGCCAT
ATGAGGGCTGATGACAGGCTGGGCAGGAGGCCATGCTGGCTGTCAGCCGGCTGAGGGACA
AATCTGGGAGGGAAGGGCAGCCTTAAGACTAGCCAGTTGGGAAATGGTATGAAGCCTAGT
TTCATCACATAGCCCATGAGAATTCACAAGGCATTAGGTCAGCCTCTTATGTCGTTGCTC
CTGAGGTCCTCTGTAGGTTGCCTGCTTTGTGCTGGGCTGACTGCACTGGGCACTCTGCAG
CATCTCAGGCAGCCAGATCTATACTGTGAGCCTGGGCTTCTCACCAGCGGGTTCTAAACT
GAAGAGTAAGAGACGTTTCCCTTGAGTCTGGCCCAGGCATCCCAGACCATGGGGTGGTAA
AATGGCTCCCTGGTAGATGTGGGTGCAGCAGGTGCAGGGTAGTGGGTGTCCAAGGGAGGA
GACTGCCAACTCAGCTCCAGACAGCTCCTTTTCCCACCCCCAGTGGGCCACATTCCCAGA
ACGGTATTTTGGTCAGTGTGACAGGGCCCCAGAGTCATCTGGCCTGGGCACAAGCTTTGT
CCTTTCCCTCCCCCAAGAGAGTGCTCTCCCATAAAAGAGCTGAGCTCAAT
1 EXON 1 36535682 36535739 - 0 58
TCACTAGGTGCATGGAGAGCAAGGGGGGACCATGGACTTCATCAGCATTGAGCAGTTG
INTRON 1 - 2 36534438 36535681 1244
GTAAGGATGTGAGGAGGATGGGTGA..........TTAATCTATCCTACGTGTCCTGCAG
2 EXON 2 36534291 36534437 0 0 147
GTAAGTGGAGAAAGAGTTGCTAGGAAAGCGTTGGAGTTTGGACGTGGAGTTCCTGATCCT
GGAGGCTGGCCTAGTGGCTGGACGCTGGGACCCCAAGAGGCTGTGGCCCGGGAGAAACTA
AAGTTGGAGGAAGAGAAAAGGAAGAAA
INTRON 2 - 3 36534116 36534290 175
GTGAGTGTTCTTGGAAGGGGGTGAT..........GGCTCGGGTGTCTCTTCTGCCCTAG
3 EXON 3 36533987 36534115 0 0 129
CTGGAAAGATTTAACAGCTCCAGACTGACTCTGGACAATCTGACAGACTTGGAAAACTTG
GTTCAAAGACGAAGAAAAAAACGACAGAGACACAAAGTCCCCCCCAGGGAACCTGAGTCT
GGGGCTGAG
INTRON 3 - 4 36532707 36533986 1280
GTGAGTGAGAGAGAGGGTAGACCTG..........TTCCTTCCATCCTGTTCTCCTCCAG
4 EXON 4 36532581 36532706 0 0 126
CCTCAGCCCCAGGTCCCACTGGAGCCCGTGGGCCTGGAAATGTTCCTGAAGGCAGCTGCT
GAGAACCAGGAGGCCCTGATTGACAAGTACCTGGCGGACGGAGGGGACCCCAATGCCCAT
GACAAG
INTRON 4 - 5 36532401 36532580 180
GTAAGTAGGGCGGGTGAATGAGCTC..........CCTAATTTTCTGTTTATGCTCCCAG
5 EXON 5 36532302 36532400 0 0 99
CTCCACCGCACAGCCTTGCACTGGGCCTGTCTGAAGGGCCACAGACAGCTGGTGAACAAG
CTGCTGGCGGCAGGAGCTGCTATAGAAGTACGGGATTTG
INTRON 5 - 6 36532211 36532301 91
GTAAGTCGCAAGGGTGGCTCTCATA..........AACACCTTGACACTTGGTGTTGCAG
6 EXON 6 36532112 36532210 0 0 99
CTGGACAGGACGCCCGTGTTCTGGGCCTGCCGCGGAGGACACCTGGACATTCTCAAACGG
CTGCTTAACCAGGGAGCTCAGGTCAACGCACAAGACAAG
INTRON 6 - 7 36532008 36532111 104
GTGAGGGGGAGGTGCCTGCCCTGGG..........CAGCACTGCACCCCACTTACCCTAG
7 EXON 7 36531909 36532007 0 0 99
ATCTGGAGCACCCCTCTCCATGTGGCAGTGCGCATGGGCCACTCCGACTGCCTAGAGCAC
CTTATCGAGTGTGGCGCCCACATCAACGCACAGGATAAG
INTRON 7 - 8 36531822 36531908 87
GTGGGTGCTTGTGCCTGGAAGTCAT..........GCAGTGACTGCCTGCTCTCCCACAG
8 EXON 8 36531723 36531821 0 0 99
GAAGGGGACACAGCACTCCACGAGGCCGTGCGCTATGGGCACCACAAAGCAACGAAACTG
CTGCTGCTCTATGGAGCCAAGCTGGGTGTGAAGAATGTG
INTRON 8 - 9 36531642 36531722 81
GTGAGTGCCGGCCAGGCAAGGTCTG..........ACCGACCCAGTGTCCTTGTTCACAG
9 EXON 9 36530534 36531641 0 - 1108
GCTTCCCAGACACCAGTGCAGCTGGCTCGAGACTGGCAGCGGGGCATCCGGGACGCACTC
CAGGCCCACGTGGGCCATCCCCGTACCCGGTGCTGATGACTGGCACCTGTGGATCACCCA
CGGCCACCATTCCACACCCATCCACCAGTCCTAAATAGTTCTTTATCCCAGTCCTAATTT
CTCTCTGGCTTTGCTTCCTCCGGCCTGAGGCAACAGGTAGAGCAGCCTCCTGGGTTTCAG
TGAGGAACCCTGTTCCCTGCCAGGGCTGGAGCAGAGGACCACAGGGCAGCAAGAAACAAA
GGGGTCCAGATGAGGGCCAAGGCCAGAGCACAAGTGAGCTGACCAGTGCTACCCTCAGCT
GGGTCTAGGCCTCCGTCTACCAGTCCTTAGACCACGGACTGGTCTTGGCCTGTTCTCCTC
TAAGTAGACATTCAGATGTGGCCAGCAGCTGCATCTAGGGCATGAGAGAAGCAGGCTGAG
TGCCAGGCACCGTGCAGGTCACTTCCGTCCTCTGGGCAGCGTTTCTCCTGGGACTTCATT
TCTACCAGTAGCAGCCCTGGTAGTGTCTGGCAGTTCTAGCCATCTCGTCTTCAGAGCTCT
GAAGGTGGGATTCGGCAGGCTGAGGGGCATGTCAGCAGGACTGAGGCCCCACAGAAGCCA
GGATCTACCAGGTTGCTCCAGAAGCTGGAGCGTGATGAGCTGGAACTAGCTAGCGTTACT
CTGGGGAAGCTCTACCTAAAGGCTCCAGGCAGCCTTGCTTACCGTATGTGAGGTCAGGGT
ACCGGGTGCTGGGGATTGCTTGTGGCCCACTCACCTCGTGGGGCAGTGGCCCGCAACCCT
GGCTTACCCTGAGGCTCTAATGCCCCCTGGTGCAGGAGAAAGCTCAGGGACTAGGCTCTG
TAGGCCCTACACACTGAGGAGTCCTGCACCTTGCTTTGGGACAATGCCAACAGTATACAT
CCCTCTCTGGTCCCGTGCCAGCTGGTAGTGTAAAGAGGACTTCACACAGGCTCCCGGGTG
GCTGCTTTCTCTCCCAGCTGTTTCCAGTTTCACTGGTGTAAACCTGTACTGCGGGCAGGG
CCCCCACTGAAGGCTGAGTGAAGGGCAA
3' upstream sequence
AAGGTGAAGGCCTCTTGAACAGCCCCAGCTGATGCCCATTTTGCAGCAGTTATTTTTTGA
TTAATTTTGGCAGCCTATGGCCATTGTTATGACGACGACTTGAAGAACCTGACTAAGTAT
AACCTGACTAAGTGTTCCCTCCAAAGGGGCATGTATCTTTCCATGGGGCAGGCCCTGCCC
CGTCATGCCAGCCAGCGTGCACCTTGACACTGGTGCCGTGGGCAACACAGACATTCAAGC
CTACTCAATATGACAATTCCTCAGAAATGAGGACACTTAGCTGACACACAAAGCACCTTT
TTATACAGATCAATGTTTTCTCATTAAACTGACTCTATTCACCTCAGCCTGGTTGCCTCA
TGGGGACTGGGAGGAGGCCAGATATTGGGCTACACAGTAGAAACCAACTGCAAAGACTAA
GACCATCACCTTCCCAACTGACAGCATGACATGGTACCAAGTGCCGTGTGTGCTCGCACG
TGCGCACATGCATTTGCATGCACAAAGGGGGCCTGCCTGGTTTGGGATCTCTATCTCTGC
CCCTTGATGGACAAATTAAGAAAGCCACACTTCTCAACTTCAGTTGTGCTTAGAATCACT
ACACATTTTTAAAGTCATGATGTCTGCTGCGTGTGGTGATGCACAACTTTAATTCCAGTA
CTGATGGGTCTGCTTCTGAGTCCTGAGTTCAGGGCCTGCCTGATTGACAGGTAAGCTCGA
GACCAGCCAGGGCTACAGTGAGACCTTTCTAACAGTCCTAATGGTATTAGGTCAGCAGCC
CTGAAGATGAGATCCAAGTATTGGTTGAAGACACGGTAATCTACGAATCTGAGCAAATTA
TAAGGGATCCTAGGTGGGTGGTGGGTTGGAAGTACCGTAATAGTCCAGGATACAATACAA
ACAAAAATCTATCTCTTCCCTAATAGTAGTGAACACACAGATACAAAAACCATAGTTCTA
TTACAACTGTTTAAAACTAGATAGGGCTGGAGAGATGGCT..........

Sequence Detail Report

Gene Symbol (Gene ID) Ankrd23 (ENSMUSG00000067653)
Transcript ID ENSMUST00000054665
SNP Information
Strain :
Sequence Retrieve :
Exon translate :
CDS Start ( 1 ) - End ( 307 )
-
Strand : forward reverse
Show sequence : nucleotide amino acid
Color information