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Target CDS Information

Gene Symbol (Gene ID) Ankrd23 (ENSMUSG00000067653)
Cross Reference
EMBL AC084391, BC145421
MGI_trans_name Ankrd23-004
OTTP OTTMUSP00000068601
OTTT OTTMUST00000126922
protein_id AAI45422.1
UCSC uc011wjl.1
UniParc UPI000189A94F
Uniprot/SPTREMBL B7ZNT7
Vega_transcript Ankrd23-004, OTTMUST00000126922
Vega_translation 178977, OTTMUSP00000068601
Definition protein_id:ENSMUSP00000141541
translation:
MDFISIEQLVSGERVDRKALEFGRGVPDPGGWPSGWTLGPQEAVAREKLKLEEEKRKKLE
RFNSSRLTLDNLTDLENLVQRRRKKRQRHKVPPREPESGAEPQPQVPLEPVGLEMFLKAA
AENQEALIDKYLADGGDPNAHDKLHRTALHWACLKGHRQLVNKLLAAGAAIEVRDLLDRT
PVFWACRGGHLDILKRLLNQGAQVNAQDKEGDTALHEAVRYGHHKATKLLLLYGAKLGVK
NVASQTPVQLARDWQRGIRDALQAHVGHPRTRC

Chromosome 1
Length
Position(start - end)
4161
36531546 - 36535708
Orient to Chromosome minus
Link Location : (1:36531546-36535708)
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Detail Map


 

Report

Polymorphisms Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Ankrd23 (ENSMUSG00000067653)
Transcript ID ENSMUST00000194853
Reports
substitution
cSNPs1
Insertion9
Deletion13
SNPs
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
Insertions
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
Deletions
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
coding sequence substitutions
premature termination by the nucleotide substitution0
synonymous num0
non-synonymous num1
synonymous substitutions
non-synonymous substitutions 36534418 (p.Asp16Ala),
B6 transcript
(ENSMUST00000194853)
MDFISIEQLVSGERVDRKALEFGRGVPDPGGWPSGWTLGPQEAVAREKLKLEEEKRKKLE
RFNSSRLTLDNLTDLENLVQRRRKKRQRHKVPPREPESGAEPQPQVPLEPVGLEMFLKAA
AENQEALIDKYLADGGDPNAHDKLHRTALHWACLKGHRQLVNKLLAAGAAIEVRDLLDRT
PVFWACRGGHLDILKRLLNQGAQVNAQDKEGDTALHEAVRYGHHKATKLLLLYGAKLGVK
NVASQTPVQLARDWQRGIRDALQAHVGHPRTRC*
MSMv4 transcript
MDFISIEQLVSGERVARKALEFGRGVPDPGGWPSGWTLGPQEAVAREKLKLEEEKRKKLE
RFNSSRLTLDNLTDLENLVQRRRKKRQRHKVPPREPESGAEPQPQVPLEPVGLEMFLKAA
AENQEALIDKYLADGGDPNAHDKLHRTALHWACLKGHRQLVNKLLAAGAAIEVRDLLDRT
PVFWACRGGHLDILKRLLNQGAQVNAQDKEGDTALHEAVRYGHHKATKLLLLYGAKLGVK
NVASQTPVQLARDWQRGIRDALQAHVGHPRTRC*
homology99.64 (274 / 274)

Exon Detail Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Ankrd23 (ENSMUSG00000067653)
Transcript ID ENSMUST00000194853
No. Exon / Intron Start End Start Phase End Phase Length Sequence
5' upstream sequence
..........TCCTCATCACCAAGGGTGTTTTTGCAGGGCCAGCATACCCAGGCCGCTTT
AAAAAGCACACTGCTGACCCTCCATGGTCTTCAGTCCTTTTAGCCACCCCTCCCCTCGAG
CTTACATGGTCATCTCTGTTGATGCTGCCTGTGCAAGAATCTTGTTTACTGGGTATCTGA
TTTCCTCTCAAAGGTCACGCTGGAGTTCAGGGCACAGCGGAGTGAAAAGCATTCCTGGCT
TCTCAAGAATTAGGTATTTGATTTTTGTTGGCTAAAAACAGTTTGCTTCGTGGCTGGCCG
TCATGGCTATTGACAGACCGAGCAAGACCTGGAGCAGGTCTCCGTCCCCTTGCCCTGTTG
AAGGGCATGCTTCATGCCCAGAGAGTATCTGATGTGGACCTGGAAGGCTCCTTCAGCCAT
ATGAGGGCTGATGACAGGCTGGGCAGGAGGCCATGCTGGCTGTCAGCCGGCTGAGGGACA
AATCTGGGAGGGAAGGGCAGCCTTAAGACTAGCCAGTTGGGAAATGGTATGAAGCCTAGT
TTCATCACATAGCCCATGAGAATTCACAAGGCATTAGGTCAGCCTCTTATGTCGTTGCTC
CTGAGGTCCTCTGTAGGTTGCCTGCTTTGTGCTGGGCTGACTGCACTGGGCACTCTGCAG
CATCTCAGGCAGCCAGATCTATACTGTGAGCCTGGGCTTCTCACCAGCGGGTTCTAAACT
GAAGAGTAAGAGACGTTTCCCTTGAGTCTGGCCCAGGCATCCCAGACCATGGGGTGGTAA
AATGGCTCCCTGGTAGATGTGGGTGCAGCAGGTGCAGGGTAGTGGGTGTCCAAGGGAGGA
GACTGCCAACTCAGCTCCAGACAGCTCCTTTTCCCACCCCCAGTGGGCCACATTCCCAGA
ACGGTATTTTGGTCAGTGTGACAGGGCCCCAGAGTCATCTGGCCTGGGCACAAGCTTTGT
CCTTTCCCTCCCCCAAGAGAGTGCTCTCCCATAAAAGAGCTGAGCTCAAT
1 EXON 1 36535682 36535739 - 0 58
TCACTAGGTGCATGGAGAGCAAGGGGGGACCATGGACTTCATCAGCATTGAGCAGTTG
INTRON 1 - 2 36534438 36535681 1244
GTAAGGATGTGAGGAGGATGGGTGA..........TTAATCTATCCTACGTGTCCTGCAG
2 EXON 2 36534291 36534437 0 0 147
GTAAGTGGAGAAAGAGTTGCTAGGAAAGCGTTGGAGTTTGGACGTGGAGTTCCTGATCCT
GGAGGCTGGCCTAGTGGCTGGACGCTGGGACCCCAAGAGGCTGTGGCCCGGGAGAAACTA
AAGTTGGAGGAAGAGAAAAGGAAGAAA
INTRON 2 - 3 36534116 36534290 175
GTGAGTGTTCTTGGAAGGGGGTGAT..........GGCTCGGGTGTCTCTTCTGCCCTAG
3 EXON 3 36533987 36534115 0 0 129
CTGGAAAGATTTAACAGCTCCAGACTGACTCTGGACAATCTGACAGACTTGGAAAACTTG
GTTCAAAGACGAAGAAAAAAACGACAGAGACACAAAGTCCCCCCCAGGGAACCTGAGTCT
GGGGCTGAG
INTRON 3 - 4 36532707 36533986 1280
GTGAGTGAGAGAGAGGGTAGACCTG..........TTCCTTCCATCCTGTTCTCCTCCAG
4 EXON 4 36532581 36532706 0 0 126
CCTCAGCCCCAGGTCCCACTGGAGCCCGTGGGCCTGGAAATGTTCCTGAAGGCAGCTGCT
GAGAACCAGGAGGCCCTGATTGACAAGTACCTGGCGGACGGAGGGGACCCCAATGCCCAT
GACAAG
INTRON 4 - 5 36532401 36532580 180
GTAAGTAGGGCGGGTGAATGAGCTC..........CCTAATTTTCTGTTTATGCTCCCAG
5 EXON 5 36532302 36532400 0 0 99
CTCCACCGCACAGCCTTGCACTGGGCCTGTCTGAAGGGCCACAGACAGCTGGTGAACAAG
CTGCTGGCGGCAGGAGCTGCTATAGAAGTACGGGATTTG
INTRON 5 - 6 36532211 36532301 91
GTAAGTCGCAAGGGTGGCTCTCATA..........AACACCTTGACACTTGGTGTTGCAG
6 EXON 6 36532112 36532210 0 0 99
CTGGACAGGACGCCCGTGTTCTGGGCCTGCCGCGGAGGACACCTGGACATTCTCAAACGG
CTGCTTAACCAGGGAGCTCAGGTCAACGCACAAGACAAG
INTRON 6 - 7 36531822 36532111 290
GTGAGGGGGAGGTGCCTGCCCTGGG..........GCAGTGACTGCCTGCTCTCCCACAG
7 EXON 7 36531723 36531821 0 0 99
GAAGGGGACACAGCACTCCACGAGGCCGTGCGCTATGGGCACCACAAAGCAACGAAACTG
CTGCTGCTCTATGGAGCCAAGCTGGGTGTGAAGAATGTG
INTRON 7 - 8 36531642 36531722 81
GTGAGTGCCGGCCAGGCAAGGTCTG..........ACCGACCCAGTGTCCTTGTTCACAG
8 EXON 8 36531326 36531641 0 - 316
GCTTCCCAGACACCAGTGCAGCTGGCTCGAGACTGGCAGCGGGGCATCCGGGACGCACTC
CAGGCCCACGTGGGCCATCCCCGTACCCGGTGCTGATGACTGGCACCTGTGGATCACCCA
CGGCCACCATTCCACACCCATCCACCAGTCCTAAATAGTTCTTTATCCCAGTCCTAATTT
CTCTCTGGCTTTGCTTCCTCCGGCCTGAGGCAACAGGTAGAGCAGCCTCCTGGGTTTCAG
TGAGGAACCCTGTTCCCTGCCAGGGCTGGAGCAGAGGACCACAGGGCAGCAAGAAACAAA
GGGGTCCAGATGAGGG
3' upstream sequence
CCAAGGCCAGAGCACAAGTGAGCTGACCAGTGCTACCCTCAGCTGGGTCTAGGCCTCCGT
CTACCAGTCCTTAGACCACGGACTGGTCTTGGCCTGTTCTCCTCTAAGTAGACATTCAGA
TGTGGCCAGCAGCTGCATCTAGGGCATGAGAGAAGCAGGCTGAGTGCCAGGCACCGTGCA
GGTCACTTCCGTCCTCTGGGCAGCGTTTCTCCTGGGACTTCATTTCTACCAGTAGCAGCC
CTGGTAGTGTCTGGCAGTTCTAGCCATCTCGTCTTCAGAGCTCTGAAGGTGGGATTCGGC
AGGCTGAGGGGCATGTCAGCAGGACTGAGGCCCCACAGAAGCCAGGATCTACCAGGTTGC
TCCAGAAGCTGGAGCGTGATGAGCTGGAACTAGCTAGCGTTACTCTGGGGAAGCTCTACC
TAAAGGCTCCAGGCAGCCTTGCTTACCGTATGTGAGGTCAGGGTACCGGGTGCTGGGGAT
TGCTTGTGGCCCACTCACCTCGTGGGGCAGTGGCCCGCAACCCTGGCTTACCCTGAGGCT
CTAATGCCCCCTGGTGCAGGAGAAAGCTCAGGGACTAGGCTCTGTAGGCCCTACACACTG
AGGAGTCCTGCACCTTGCTTTGGGACAATGCCAACAGTATACATCCCTCTCTGGTCCCGT
GCCAGCTGGTAGTGTAAAGAGGACTTCACACAGGCTCCCGGGTGGCTGCTTTCTCTCCCA
GCTGTTTCCAGTTTCACTGGTGTAAACCTGTACTGCGGGCAGGGCCCCCACTGAAGGCTG
AGTGAAGGGCAAAAGGTGAAGGCCTCTTGAACAGCCCCAGCTGATGCCCATTTTGCAGCA
GTTATTTTTTGATTAATTTTGGCAGCCTATGGCCATTGTTATGACGACGACTTGAAGAAC
CTGACTAAGTATAACCTGACTAAGTGTTCCCTCCAAAGGGGCATGTATCTTTCCATGGGG
CAGGCCCTGCCCCGTCATGCCAGCCAGCGTGCACCTTGAC..........

Sequence Detail Report

Gene Symbol (Gene ID) Ankrd23 (ENSMUSG00000067653)
Transcript ID ENSMUST00000194853
SNP Information
Strain :
Sequence Retrieve :
Exon translate :
CDS Start ( 1 ) - End ( 274 )
-
Strand : forward reverse
Show sequence : nucleotide amino acid
Color information