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Target CDS Information

Gene Symbol (Gene ID) Dbn1 (ENSMUSG00000034675)
Cross Reference
CCDS CCDS36677.1
EMBL AK162697
Fantom 9930032O15
MGI_trans_name Dbn1-002
OTTP OTTMUSP00000018532
OTTT OTTMUST00000041295
protein_id BAE37026.1
RefSeq_mRNA NM_019813.4
RefSeq_peptide NP_062787
UCSC uc007qrd.2, uc011yzu.1
UniParc UPI0000021C16
Uniprot/SPTREMBL Q3TRK3
Vega_transcript Dbn1-002, OTTMUST00000041295
Vega_translation 214573, OTTMUSP00000018532
Definition protein_id:ENSMUSP00000105549
translation:
MAGVSFSGHRLELLAAYEEVIREESAADWALYTYEDGSDDLKLAASGEGGLQELSGHFEN
QKVMYGFCSVKDSQAALPKYVLINWVGEDVPDARKCACASHVAKVAEFFQGVDVIVNASS
VEDIDAGAIGQRLSNGLARLSSPVLHRLRLREDENAEPVGTTYQKTDAAVEMKRINREQF
WEQAKKEEELRKEEERKKALDARLRFEQERMEQERQEQEERERRYREREQQIEEHRRKQQ
SLEAEEAKRRLKEQSIFGDQRDEEEESQMKKSESEVEEAAAIIAQRPDNPREFFRQQERV
ASASGGSCDAPAPAPFNHRPGSHLDSHRRMAPTPIPTRSPSDSSTASTPIAEQIERALDE
VTSSQPPPPPPPPPPTQEAQETTPSLDEELSKEAKVTAAPEVWAGCAAEPPQAQEPPLLQ
SSPLEDSMCTESPEQAALAAPAEPAASVTSVADVHAADTIETTTATTDTTIANNVTPAAA
SLIDLWPGNGEEASTLQAEPRVPTPPSGAEASLAEVPLLNEAAQEPLPPVGEGCANLLNF
DELPEPPATFCDPEEEVGETLAASQVLTMPSALEEVDQVLEQELEPEPHLLTNGETTQKE
GTQASEGYFSQSQEEEFAQSEEPCAKVPPPVFYNKPPEIDITCWDADPVPEEEEGFEGGD

Chromosome 13
Length
Position(start - end)
13724
55474223 - 55487948
Orient to Chromosome minus
Link Location : (13:55474223-55487948)
/

Detail Map


 

Report

Polymorphisms Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Dbn1 (ENSMUSG00000034675)
Transcript ID ENSMUST00000109923
Reports
substitution
cSNPs3
Insertion6
Deletion4
SNPs
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
Insertions
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
Deletions
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
coding sequence substitutions
premature termination by the nucleotide substitution0
synonymous num2
non-synonymous num1
synonymous substitutions 55475289 (p.Ile460Ile), 55477792 (p.Ser272Ser),
non-synonymous substitutions 55477583 (p.Ala310Val),
B6 transcript
(ENSMUST00000109923)
MAGVSFSGHRLELLAAYEEVIREESAADWALYTYEDGSDDLKLAASGEGGLQELSGHFEN
QKVMYGFCSVKDSQAALPKYVLINWVGEDVPDARKCACASHVAKVAEFFQGVDVIVNASS
VEDIDAGAIGQRLSNGLARLSSPVLHRLRLREDENAEPVGTTYQKTDAAVEMKRINREQF
WEQAKKEEELRKEEERKKALDARLRFEQERMEQERQEQEERERRYREREQQIEEHRRKQQ
SLEAEEAKRRLKEQSIFGDQRDEEEESQMKKSESEVEEAAAIIAQRPDNPREFFRQQERV
ASASGGSCDAPAPAPFNHRPGSHLDSHRRMAPTPIPTRSPSDSSTASTPIAEQIERALDE
VTSSQPPPPPPPPPPTQEAQETTPSLDEELSKEAKVTAAPEVWAGCAAEPPQAQEPPLLQ
SSPLEDSMCTESPEQAALAAPAEPAASVTSVADVHAADTIETTTATTDTTIANNVTPAAA
SLIDLWPGNGEEASTLQAEPRVPTPPSGAEASLAEVPLLNEAAQEPLPPVGEGCANLLNF
DELPEPPATFCDPEEEVGETLAASQVLTMPSALEEVDQVLEQELEPEPHLLTNGETTQKE
GTQASEGYFSQSQEEEFAQSEEPCAKVPPPVFYNKPPEIDITCWDADPVPEEEEGFEGGD
*
MSMv4 transcript
MAGVSFSGHRLELLAAYEEVIREESAADWALYTYEDGSDDLKLAASGEGGLQELSGHFEN
QKVMYGFCSVKDSQAALPKYVLINWVGEDVPDARKCACASHVAKVAEFFQGVDVIVNASS
VEDIDAGAIGQRLSNGLARLSSPVLHRLRLREDENAEPVGTTYQKTDAAVEMKRINREQF
WEQAKKEEELRKEEERKKALDARLRFEQERMEQERQEQEERERRYREREQQIEEHRRKQQ
SLEAEEAKRRLKEQSIFGDQRDEEEESQMKKSESEVEEAAAIIAQRPDNPREFFRQQERV
ASASGGSCDVPAPAPFNHRPGSHLDSHRRMAPTPIPTRSPSDSSTASTPIAEQIERALDE
VTSSQPPPPPPPPPPTQEAQETTPSLDEELSKEAKVTAAPEVWAGCAAEPPQAQEPPLLQ
SSPLEDSMCTESPEQAALAAPAEPAASVTSVADVHAADTIETTTATTDTTIANNVTPAAA
SLIDLWPGNGEEASTLQAEPRVPTPPSGAEASLAEVPLLNEAAQEPLPPVGEGCANLLNF
DELPEPPATFCDPEEEVGETLAASQVLTMPSALEEVDQVLEQELEPEPHLLTNGETTQKE
GTQASEGYFSQSQEEEFAQSEEPCAKVPPPVFYNKPPEIDITCWDADPVPEEEEGFEGGD
*
homology99.85 (661 / 661)

Exon Detail Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Dbn1 (ENSMUSG00000034675)
Transcript ID ENSMUST00000109923
No. Exon / Intron Start End Start Phase End Phase Length Sequence
5' upstream sequence
..........GCCTGCCTGCCTGCCTGCCTGCCTGGGAAATGGGTTGGGATGTCCAGTGG
GTATGGAAAGGTTAACCAGAGCTGTGGAGGGCTTCAGTGTTCTCCATTCCACAGGAAACA
GTGCCTGGAAGCTCTGTGCAGCCATGTCCCCATAGAGAAGTCTCTGAGGCCCAGTCCCTT
CTGCACTCAGAGCTTTGGGAAATAAAAAGTGCCAGAAAGTTCTCCCTGGAATGGCTTTGG
AGGAGCCCTGCCTTGGGGACCCTACTTGGGCTTCCTTAGGAGGGATGGTACTTGGAAAAG
AAGGCATCATTTTTTTTTTTTTTTTTTTTTGATACCCATCTGGGAGGAAGAAAATGACTG
AAAGTAAAGGATGAGGGAGGTGGGGTGTAAACGGCTTGAGACAAGGTATGGCTAAGAAGA
GGGGTCTGAGTGGAATTCAGACAGGCTGGCATAGCAAGAGGGTATGGTGACTAGGTGGGA
TGTGTGCAGAGGTAAGCATGGGCCTGTAGCTGAGATGGAAGTAGTGGTGGTAGACTAGGG
AGGGTCCTTTCAGAGGAAATGGACTACACGTAACCCAGGCCTGGTCTGATGAGGAACTGA
ATCCGGGCAGGGACAGAGTAAGGACCATAAGGGGTTTAAGGTAGGGTGTAACGGACCCAG
GAATGATGTGAGTCTGGGCTGGAGTTAAATGGATCAAGGGTGTTGGGCTGGGTCAATTAC
TCTGGGGAGATGGAGAGGGATGAATCTGGGCCTGGAATCTTGGTGGGTTTATGGCTAGGG
AAGAGGGGTGTGCTGCCAGGTTGGGGACGAGGACAAGACAGGTGCATGGGACTGGCCCTG
GGAGCAGAGCGGAAGCTCAGTGTCCGGTGCTGGCCAGCAGGGTGAGGGGCGCGTGTGGGA
CGCCCCGGGGCAAACTGGGAAGGGGGGGCGGGCCTCCCCCTGGGCCGGGCCGGGGCGGCG
CTAGGACCGAGCGAGCCGAGGGAGTGAGCCGGGCGGAGCCAGCGCCCCCC
1 EXON 1 55487863 55488111 - 2 249
GCCCCCCGCCGGCCGGCTCCCCTCCCCCGGCCGCTGGCTCGCTCGCTCTCAGCGCTGCAG
AGGCTCTGAGGCGGCGGCGGCGACTCCCTCATCCCCTCCCTCCGGTTTCGGTCGGTCCGC
CTGTGCGTGCGTCTGTCCGTTCGGCCTCGGTCCGGCCCGCAGCATGGCCGGCGTCAGCTT
CAGCGGCCACCGCCTGGAGCTGCTGGCGGCGTACGAGGAGGTGATCCGGGAGGAGAGCGC
AGCCGACTG
INTRON 1 - 2 55483443 55487862 4420
GTGAGCCCCCCGCCCCCGCCCCCGC..........TCTGAGCCATCCTCCCTCTCCTCAG
2 EXON 2 55483387 55483442 2 1 56
GGCTCTGTACACATACGAGGATGGCTCAGATGACCTCAAGCTTGCAGCGTCAGGAG
INTRON 2 - 3 55482805 55483386 582
GTAAGAATTCCAGCCGTTCCCTCTC..........CCCAACATCTCCCTGGTTTCTCCAG
3 EXON 3 55482692 55482804 1 0 113
AAGGGGGCTTGCAGGAGCTTTCCGGCCACTTCGAGAACCAGAAAGTGATGTATGGTTTCT
GCAGCGTCAAGGACTCCCAAGCTGCCCTGCCAAAATATGTGCTCATCAACTGG
INTRON 3 - 4 55482488 55482691 204
GTATGTGGCTGTGGGATGGGGCTGG..........CCCCTCTTCACTGGGCACATTGCAG
4 EXON 4 55482413 55482487 0 0 75
GTTGGTGAGGATGTGCCTGATGCCCGAAAATGTGCTTGCGCCAGTCATGTGGCCAAGGTG
GCTGAATTCTTCCAG
INTRON 4 - 5 55482298 55482412 115
GTATGTTGGGACCGGGTCTGAAGTG..........CTAAACACTGCTTTTTGTATGGAAG
5 EXON 5 55482151 55482297 0 0 147
GGTGTTGATGTCATTGTGAATGCCAGCAGTGTGGAAGACATCGATGCTGGTGCCATTGGG
CAGCGGCTCTCCAATGGACTGGCACGGCTCTCCAGCCCAGTATTGCACCGCCTGCGCCTT
CGGGAGGATGAAAATGCTGAACCGGTG
INTRON 5 - 6 55481991 55482150 160
GTCAGTGTATTCCCGGGACAGGCTG..........CATGCCCAGGCACTTGACTCTGCAG
6 EXON 6 55481913 55481990 0 0 78
GGTACCACCTACCAGAAGACGGATGCAGCAGTGGAGATGAAGCGGATTAACCGTGAGCAG
TTTTGGGAGCAGGCCAAG
INTRON 6 - 7 55481691 55481912 222
GTGGGCAATGCTGTAGCCTTCAGGC..........TGTCCTTCCTGGGTGTGGGGTGCAG
7 EXON 7 55481539 55481690 0 2 152
AAGGAGGAAGAGCTGCGGAAGGAGGAGGAGCGGAAGAAGGCTCTGGACGCCAGGCTCAGG
TTTGAACAGGAACGGATGGAGCAGGAGCGGCAGGAGCAGGAAGAACGTGAGCGGCGCTAC
CGGGAGCGGGAGCAGCAGATTGAGGAGCACAG
INTRON 7 - 8 55481413 55481538 126
GTAAGCTCAGGCCCCAGGCGAAGGG..........GGCTTCCCCGCACTTCTCCTTCCAG
8 EXON 8 55481349 55481412 2 0 64
GAGGAAACAGCAGAGTCTGGAAGCTGAAGAAGCCAAGAGGAGGTTAAAGGAGCAGTCTAT
CTTT
INTRON 8 - 9 55477837 55481348 3512
GTAAGTTCTTTTCCAGGGCTCTTGT..........GGACATTGTCCCTTTGGTTTTCCAG
9 EXON 9 55477777 55477836 0 0 60
GGTGACCAGCGGGATGAAGAGGAAGAGTCCCAGATGAAGAAGTCAGAGTCAGAGGTGGAG
INTRON 9 - 10 55477681 55477776 96
GTGAGAGCGGGGGGAGTGGCAAGTG..........TCTAACTCTTCCCTTGTGCCCTCAG
10 EXON 10 55477551 55477680 0 1 130
GAGGCGGCTGCCATCATTGCCCAGCGGCCTGATAACCCACGGGAGTTCTTCAGACAGCAG
GAACGAGTGGCATCGGCCTCTGGTGGCAGCTGTGACGTGCCTGCGCCTGCACCCTTCAAC
CACCGACCAG
INTRON 10 - 11 55476317 55477550 1234
GTAGTCCTTGGCCCCCTCCTTGCCC..........ACTAGCCTGGGCATTTGCTCCGCAG
11 EXON 11 55476146 55476316 1 1 171
GCAGCCACCTGGACAGCCACCGGAGGATGGCACCCACTCCTATTCCCACCCGGAGCCCAT
CTGATTCCAGCACAGCCTCTACCCCCATCGCTGAGCAGATCGAGAGGGCCCTGGATGAGG
TCACATCCTCGCAGCCTCCACCTCCACCTCCACCACCTCCACCAACTCAAG
INTRON 11 - 12 55475537 55476145 609
GTAAGAGAAGGGCCCCACCGGTACC..........GTGTCCTTCATGTGCACTGCCACAG
12 EXON 12 55474860 55475536 1 0 677
AGGCCCAGGAGACTACCCCAAGCCTGGATGAAGAGCTCAGCAAGGAGGCCAAAGTAACAG
CAGCTCCTGAGGTCTGGGCTGGCTGTGCGGCAGAGCCCCCTCAGGCACAGGAACCTCCCC
TGTTGCAAAGCAGCCCCCTGGAGGACTCGATGTGCACAGAATCTCCAGAGCAGGCTGCCC
TGGCTGCCCCTGCGGAGCCTGCTGCCTCTGTCACCTCAGTAGCTGATGTCCATGCAGCTG
ACACCATCGAGACCACCACTGCCACTACTGACACCACTATTGCCAACAACGTCACCCCTG
CCGCTGCCAGCCTCATTGATCTATGGCCTGGCAACGGGGAAGAGGCCTCAACACTTCAGG
CTGAACCCAGGGTGCCCACACCACCCTCAGGTGCTGAGGCCTCCCTGGCAGAGGTGCCCC
TGCTGAATGAGGCCGCTCAGGAGCCGCTGCCGCCGGTAGGCGAAGGCTGTGCTAACCTTC
TTAATTTTGATGAGCTGCCAGAACCTCCAGCCACCTTCTGTGACCCAGAGGAGGAAGTAG
GAGAAACGCTGGCTGCCTCCCAGGTCCTAACTATGCCCTCAGCTCTAGAGGAGGTAGATC
AGGTGCTGGAGCAGGAGCTGGAGCCAGAACCTCACCTGCTGACCAATGGAGAGACCACTC
AAAAGGAGGGGACCCAG
INTRON 12 - 13 55474559 55474859 301
GTGGGACAGGGGGAGCCTGGTGGGA..........AAAACCAAATAACAAACCCCAGCAG
13 EXON 13 55474456 55474558 0 1 103
GCCAGCGAAGGATACTTCAGTCAGTCACAGGAGGAAGAGTTCGCCCAATCAGAAGAGCCA
TGTGCAAAGGTTCCGCCTCCTGTATTTTACAACAAGCCTCCAG
INTRON 13 - 14 55474294 55474455 162
GTAGTATCCCCGGGTGAATGATGGG..........TCTCTCTTCTCTCAATATATCCTAG
14 EXON 14 55473429 55474293 1 - 865
AAATCGACATCACCTGCTGGGATGCAGACCCAGTTCCTGAAGAGGAAGAGGGCTTCGAGG
GTGGTGATTAGTAGCGGCGACTGCCCCCTGGCTGCCCTCGCCAAGGCTGCCTACCTGCAG
TGGCCTCTGGCCAGCCGGCTTGCAGTGCCAGCATTAGCAGCAGCCCCGCCTGGCTCCCAC
TCTGGATTCCGGCACTGGCCGGGGACCTGTCTGCTTCCTTACCCACAGGGCCTGACTTTT
ACAGCTTTTCTCTTTTTTTTAAAAGTTGATAGACTTGTACAATTGACTGGTTTTCCTCCC
GTTGGTAGTTGAAACAATGTTGCAGATTCCACCCCCTTCCTGCCCAGACCAGATTGTAGC
TTAGTTCTTTCTGCTCAGCTGACCAGGGTGGAGGCCTCACCTTGTTTGGGACCTGGTGGG
GGTCGGGGGTTCTGGTGGGAAAATGTTCCCCCCATCACTTTTCCTAGTTTTATGTTTCTT
GGAAAAAAAATCACTTTGTATTCTCTATCCAGGGCTTCAGATATTTTGCACGAAATTTAA
AACATGGCAATAAATGGCTCGTGGGCTCTGGCTCCCTGGGACCCTTCCCCTTCTCTTTAC
CCTCGCTGCTTGGTCAGAAGGAATTATCAGACCCACCTGGGGCCCCTTGGCTTCCCGCCC
TCTCCTGCCGGGCAGGTCCCAGGCTGGAGGTCCTAGGCATGACTCAAGTCAGGGCTTATT
GATGGGACCCAGTGGTTTGGGTGGCCCCTCCCCAATTCCTTCCTCTCTGCTTGGGTTCTT
TTTCACATTAACTTTTTTTTTTTTTCTAAGCACAAACTTATGTAATGGGTCGTGCTCATG
TCTGTTAATAAAGAAATCCAGATCC
3' upstream sequence
CTTCGGGCCTGCTGCTCTGGGCCTCCAGGGGTTGATCTGGCGTGGGCGCCGGCCCTCACG
ACCAGCTTCCCAACTCCTGTCACCTCCGAGGCTACAGGGGGCGCACAAAAACAGGTTAGG
AGGAGACGGAACATTAAGCCCTTGAGAAACAACCTTTGGTTTCCGAACACCAGCCCTCTG
CTCTCAAGGCCAGGACTCGGGCACTTTCCCTAAAGTCCACATGCCCGGTCACTAGCACCT
TGTGCTTAAAGCAGCTGGTATCCCCCTCCGCTTGTACCAAAGCAGATCACACACCTTTAT
TATCCTCAAAATGTAACAAACAGGGTAAGAAATCCCTCCCTCCCCCCCACCCCTCCCTGC
AGTCCAAGGGAAGCATTTAAAAAGCCTCGCAGTCAGGCTAGGAGTTCGCCCGTGGGGCTC
GGGACGCCGGGCGCCCCTCTATACGGCTGTAGTCCTCCCGAACAAGGGGATGGAGACCGG
CAGACGCCAAGCTCCGTGCTCCAGGGGCTCTCGGCTGCTGAGCTCTGAGTCGGTCCAGCT
GGGGAAAACCCGGCGGCTGCGTTCCGCCTGCAGACAGAGGGCAGGGCAGGGTGCGGCGGG
CCGCGGGGCGCTGGGAAGATGCAGCGCCGAAGTATAGCCCCGGTCCAGGAAGAGAGGCTT
GTAACTCGGAGGCGGCTGCTCCTGCTTCTCCGCGCTGTCGCGGCGGCTCAGAAAGGGCGT
GACGATCTTGCGGTAGAGGCCGCGAGTGTCCGTGAGCACCTCGCTGTAGGGAGGCGGCGG
CTCGGCCATCAGCACCGCCTCCTCGTAGCACGGCGGCTTAGACATGTCCGATTCCGCTGC
GGAACGGGAAGCGGGCTGGTGAGGATGAAGCCGCCGGCCCGGGGCAGAAGCCTCGCCCAG
CCACCACCACCCCAGCCCGCTTCTCCCGGTGCTAAGGGTGGGGCGCCTCCGGCATGGGCA
GGGAGCGCTCGCCTGCCGAAACGCAGCCTTACCTTGGCGC..........

Sequence Detail Report

Gene Symbol (Gene ID) Dbn1 (ENSMUSG00000034675)
Transcript ID ENSMUST00000109923
SNP Information
Strain :
Sequence Retrieve :
Exon translate :
CDS Start ( 1 ) - End ( 661 )
-
Strand : forward reverse
Show sequence : nucleotide amino acid
Color information