top page

Tutorials are available here.

Target CDS Information

Gene Symbol (Gene ID) Dbn1 (ENSMUSG00000034675)
Cross Reference
CCDS CCDS36677.1
EMBL AK162697
Fantom 9930032O15
MGI_trans_name Dbn1-002
OTTP OTTMUSP00000018532
OTTT OTTMUST00000041295
protein_id BAE37026.1
RefSeq_mRNA NM_019813.4
RefSeq_peptide NP_062787
UCSC uc007qrd.2, uc011yzu.1
UniParc UPI0000021C16
Uniprot/SPTREMBL Q3TRK3
Vega_transcript Dbn1-002, OTTMUST00000041295
Vega_translation 214573, OTTMUSP00000018532
Definition protein_id:ENSMUSP00000105549
translation:
MAGVSFSGHRLELLAAYEEVIREESAADWALYTYEDGSDDLKLAASGEGGLQELSGHFEN
QKVMYGFCSVKDSQAALPKYVLINWVGEDVPDARKCACASHVAKVAEFFQGVDVIVNASS
VEDIDAGAIGQRLSNGLARLSSPVLHRLRLREDENAEPVGTTYQKTDAAVEMKRINREQF
WEQAKKEEELRKEEERKKALDARLRFEQERMEQERQEQEERERRYREREQQIEEHRRKQQ
SLEAEEAKRRLKEQSIFGDQRDEEEESQMKKSESEVEEAAAIIAQRPDNPREFFRQQERV
ASASGGSCDAPAPAPFNHRPGSHLDSHRRMAPTPIPTRSPSDSSTASTPIAEQIERALDE
VTSSQPPPPPPPPPPTQEAQETTPSLDEELSKEAKVTAAPEVWAGCAAEPPQAQEPPLLQ
SSPLEDSMCTESPEQAALAAPAEPAASVTSVADVHAADTIETTTATTDTTIANNVTPAAA
SLIDLWPGNGEEASTLQAEPRVPTPPSGAEASLAEVPLLNEAAQEPLPPVGEGCANLLNF
DELPEPPATFCDPEEEVGETLAASQVLTMPSALEEVDQVLEQELEPEPHLLTNGETTQKE
GTQASEGYFSQSQEEEFAQSEEPCAKVPPPVFYNKPPEIDITCWDADPVPEEEEGFEGGD

Chromosome 13
Length
Position(start - end)
13,724
55,474,223 - 55,487,948
Orient to Chromosome minus
Link Location : (13:55474223-55487948)
/

Detail Map


 

Report

Polymorphisms Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Dbn1 (ENSMUSG00000034675)
Transcript ID ENSMUST00000109923
Reports
substitution
cSNPs3
Insertion6
Deletion4
SNPs
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
Insertions
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
Deletions
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
coding sequence substitutions
premature termination by the nucleotide substitution0
synonymous num2
non-synonymous num1
synonymous substitutions 55475289 (p.Ile460Ile), 55477792 (p.Ser272Ser),
non-synonymous substitutions 55477583 (p.Ala310Val),
B6 transcript
(ENSMUST00000109923)
MAGVSFSGHRLELLAAYEEVIREESAADWALYTYEDGSDDLKLAASGEGGLQELSGHFEN
QKVMYGFCSVKDSQAALPKYVLINWVGEDVPDARKCACASHVAKVAEFFQGVDVIVNASS
VEDIDAGAIGQRLSNGLARLSSPVLHRLRLREDENAEPVGTTYQKTDAAVEMKRINREQF
WEQAKKEEELRKEEERKKALDARLRFEQERMEQERQEQEERERRYREREQQIEEHRRKQQ
SLEAEEAKRRLKEQSIFGDQRDEEEESQMKKSESEVEEAAAIIAQRPDNPREFFRQQERV
ASASGGSCDAPAPAPFNHRPGSHLDSHRRMAPTPIPTRSPSDSSTASTPIAEQIERALDE
VTSSQPPPPPPPPPPTQEAQETTPSLDEELSKEAKVTAAPEVWAGCAAEPPQAQEPPLLQ
SSPLEDSMCTESPEQAALAAPAEPAASVTSVADVHAADTIETTTATTDTTIANNVTPAAA
SLIDLWPGNGEEASTLQAEPRVPTPPSGAEASLAEVPLLNEAAQEPLPPVGEGCANLLNF
DELPEPPATFCDPEEEVGETLAASQVLTMPSALEEVDQVLEQELEPEPHLLTNGETTQKE
GTQASEGYFSQSQEEEFAQSEEPCAKVPPPVFYNKPPEIDITCWDADPVPEEEEGFEGGD
*
MSMv4 transcript
MAGVSFSGHRLELLAAYEEVIREESAADWALYTYEDGSDDLKLAASGEGGLQELSGHFEN
QKVMYGFCSVKDSQAALPKYVLINWVGEDVPDARKCACASHVAKVAEFFQGVDVIVNASS
VEDIDAGAIGQRLSNGLARLSSPVLHRLRLREDENAEPVGTTYQKTDAAVEMKRINREQF
WEQAKKEEELRKEEERKKALDARLRFEQERMEQERQEQEERERRYREREQQIEEHRRKQQ
SLEAEEAKRRLKEQSIFGDQRDEEEESQMKKSESEVEEAAAIIAQRPDNPREFFRQQERV
ASASGGSCDVPAPAPFNHRPGSHLDSHRRMAPTPIPTRSPSDSSTASTPIAEQIERALDE
VTSSQPPPPPPPPPPTQEAQETTPSLDEELSKEAKVTAAPEVWAGCAAEPPQAQEPPLLQ
SSPLEDSMCTESPEQAALAAPAEPAASVTSVADVHAADTIETTTATTDTTIANNVTPAAA
SLIDLWPGNGEEASTLQAEPRVPTPPSGAEASLAEVPLLNEAAQEPLPPVGEGCANLLNF
DELPEPPATFCDPEEEVGETLAASQVLTMPSALEEVDQVLEQELEPEPHLLTNGETTQKE
GTQASEGYFSQSQEEEFAQSEEPCAKVPPPVFYNKPPEIDITCWDADPVPEEEEGFEGGD
*
homology99.85 (661 / 661)

Exon Detail Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Dbn1 (ENSMUSG00000034675)
Transcript ID ENSMUST00000109923
No. Exon / Intron Start End Start Phase End Phase Length Sequence
5' upstream sequence
..........GCCTGCCTGCCTGCCTGCCTGCCTGGGAAATGGGTTGGGATGTCCAGTGG
GTATGGAAAGGTTAACCAGAGCTGTGGAGGGCTTCAGTGTTCTCCATTCCACAGGAAACA
GTGCCTGGAAGCTCTGTGCAGCCATGTCCCCATAGAGAAGTCTCTGAGGCCCAGTCCCTT
CTGCACTCAGAGCTTTGGGAAATAAAAAGTGCCAGAAAGTTCTCCCTGGAATGGCTTTGG
AGGAGCCCTGCCTTGGGGACCCTACTTGGGCTTCCTTAGGAGGGATGGTACTTGGAAAAG
AAGGCATCATTTTTTTTTTTTTTTTTTTTTGATACCCATCTGGGAGGAAGAAAATGACTG
AAAGTAAAGGATGAGGGAGGTGGGGTGTAAACGGCTTGAGACAAGGTATGGCTAAGAAGA
GGGGTCTGAGTGGAATTCAGACAGGCTGGCATAGCAAGAGGGTATGGTGACTAGGTGGGA
TGTGTGCAGAGGTAAGCATGGGCCTGTAGCTGAGATGGAAGTAGTGGTGGTAGACTAGGG
AGGGTCCTTTCAGAGGAAATGGACTACACGTAACCCAGGCCTGGTCTGATGAGGAACTGA
ATCCGGGCAGGGACAGAGTAAGGACCATAAGGGGTTTAAGGTAGGGTGTAACGGACCCAG
GAATGATGTGAGTCTGGGCTGGAGTTAAATGGATCAAGGGTGTTGGGCTGGGTCAATTAC
TCTGGGGAGATGGAGAGGGATGAATCTGGGCCTGGAATCTTGGTGGGTTTATGGCTAGGG
AAGAGGGGTGTGCTGCCAGGTTGGGGACGAGGACAAGACAGGTGCATGGGACTGGCCCTG
GGAGCAGAGCGGAAGCTCAGTGTCCGGTGCTGGCCAGCAGGGTGAGGGGCGCGTGTGGGA
CGCCCCGGGGCAAACTGGGAAGGGGGGGCGGGCCTCCCCCTGGGCCGGGCCGGGGCGGCG
CTAGGACCGAGCGAGCCGAGGGAGTGAGCCGGGCGGAGCCAGCGCCCCCC
1 EXON 1 55,487,863 55,488,111 - 2 249
GCCCCCCGCCGGCCGGCTCCCCTCCCCCGGCCGCTGGCTCGCTCGCTCTCAGCGCTGCAG
AGGCTCTGAGGCGGCGGCGGCGACTCCCTCATCCCCTCCCTCCGGTTTCGGTCGGTCCGC
CTGTGCGTGCGTCTGTCCGTTCGGCCTCGGTCCGGCCCGCAGCATGGCCGGCGTCAGCTT
CAGCGGCCACCGCCTGGAGCTGCTGGCGGCGTACGAGGAGGTGATCCGGGAGGAGAGCGC
AGCCGACTG
INTRON 1 - 2 55,483,443 55,487,862 4,420
GTGAGCCCCCCGCCCCCGCCCCCGC..........TCTGAGCCATCCTCCCTCTCCTCAG
2 EXON 2 55,483,387 55,483,442 2 1 56
GGCTCTGTACACATACGAGGATGGCTCAGATGACCTCAAGCTTGCAGCGTCAGGAG
INTRON 2 - 3 55,482,805 55,483,386 582
GTAAGAATTCCAGCCGTTCCCTCTC..........CCCAACATCTCCCTGGTTTCTCCAG
3 EXON 3 55,482,692 55,482,804 1 0 113
AAGGGGGCTTGCAGGAGCTTTCCGGCCACTTCGAGAACCAGAAAGTGATGTATGGTTTCT
GCAGCGTCAAGGACTCCCAAGCTGCCCTGCCAAAATATGTGCTCATCAACTGG
INTRON 3 - 4 55,482,488 55,482,691 204
GTATGTGGCTGTGGGATGGGGCTGG..........CCCCTCTTCACTGGGCACATTGCAG
4 EXON 4 55,482,413 55,482,487 0 0 75
GTTGGTGAGGATGTGCCTGATGCCCGAAAATGTGCTTGCGCCAGTCATGTGGCCAAGGTG
GCTGAATTCTTCCAG
INTRON 4 - 5 55,482,298 55,482,412 115
GTATGTTGGGACCGGGTCTGAAGTG..........CTAAACACTGCTTTTTGTATGGAAG
5 EXON 5 55,482,151 55,482,297 0 0 147
GGTGTTGATGTCATTGTGAATGCCAGCAGTGTGGAAGACATCGATGCTGGTGCCATTGGG
CAGCGGCTCTCCAATGGACTGGCACGGCTCTCCAGCCCAGTATTGCACCGCCTGCGCCTT
CGGGAGGATGAAAATGCTGAACCGGTG
INTRON 5 - 6 55,481,991 55,482,150 160
GTCAGTGTATTCCCGGGACAGGCTG..........CATGCCCAGGCACTTGACTCTGCAG
6 EXON 6 55,481,913 55,481,990 0 0 78
GGTACCACCTACCAGAAGACGGATGCAGCAGTGGAGATGAAGCGGATTAACCGTGAGCAG
TTTTGGGAGCAGGCCAAG
INTRON 6 - 7 55,481,691 55,481,912 222
GTGGGCAATGCTGTAGCCTTCAGGC..........TGTCCTTCCTGGGTGTGGGGTGCAG
7 EXON 7 55,481,539 55,481,690 0 2 152
AAGGAGGAAGAGCTGCGGAAGGAGGAGGAGCGGAAGAAGGCTCTGGACGCCAGGCTCAGG
TTTGAACAGGAACGGATGGAGCAGGAGCGGCAGGAGCAGGAAGAACGTGAGCGGCGCTAC
CGGGAGCGGGAGCAGCAGATTGAGGAGCACAG
INTRON 7 - 8 55,481,413 55,481,538 126
GTAAGCTCAGGCCCCAGGCGAAGGG..........GGCTTCCCCGCACTTCTCCTTCCAG
8 EXON 8 55,481,349 55,481,412 2 0 64
GAGGAAACAGCAGAGTCTGGAAGCTGAAGAAGCCAAGAGGAGGTTAAAGGAGCAGTCTAT
CTTT
INTRON 8 - 9 55,477,837 55,481,348 3,512
GTAAGTTCTTTTCCAGGGCTCTTGT..........GGACATTGTCCCTTTGGTTTTCCAG
9 EXON 9 55,477,777 55,477,836 0 0 60
GGTGACCAGCGGGATGAAGAGGAAGAGTCCCAGATGAAGAAGTCAGAGTCAGAGGTGGAG
INTRON 9 - 10 55,477,681 55,477,776 96
GTGAGAGCGGGGGGAGTGGCAAGTG..........TCTAACTCTTCCCTTGTGCCCTCAG
10 EXON 10 55,477,551 55,477,680 0 1 130
GAGGCGGCTGCCATCATTGCCCAGCGGCCTGATAACCCACGGGAGTTCTTCAGACAGCAG
GAACGAGTGGCATCGGCCTCTGGTGGCAGCTGTGACGTGCCTGCGCCTGCACCCTTCAAC
CACCGACCAG
INTRON 10 - 11 55,476,317 55,477,550 1,234
GTAGTCCTTGGCCCCCTCCTTGCCC..........ACTAGCCTGGGCATTTGCTCCGCAG
11 EXON 11 55,476,146 55,476,316 1 1 171
GCAGCCACCTGGACAGCCACCGGAGGATGGCACCCACTCCTATTCCCACCCGGAGCCCAT
CTGATTCCAGCACAGCCTCTACCCCCATCGCTGAGCAGATCGAGAGGGCCCTGGATGAGG
TCACATCCTCGCAGCCTCCACCTCCACCTCCACCACCTCCACCAACTCAAG
INTRON 11 - 12 55,475,537 55,476,145 609
GTAAGAGAAGGGCCCCACCGGTACC..........GTGTCCTTCATGTGCACTGCCACAG
12 EXON 12 55,474,860 55,475,536 1 0 677
AGGCCCAGGAGACTACCCCAAGCCTGGATGAAGAGCTCAGCAAGGAGGCCAAAGTAACAG
CAGCTCCTGAGGTCTGGGCTGGCTGTGCGGCAGAGCCCCCTCAGGCACAGGAACCTCCCC
TGTTGCAAAGCAGCCCCCTGGAGGACTCGATGTGCACAGAATCTCCAGAGCAGGCTGCCC
TGGCTGCCCCTGCGGAGCCTGCTGCCTCTGTCACCTCAGTAGCTGATGTCCATGCAGCTG
ACACCATCGAGACCACCACTGCCACTACTGACACCACTATTGCCAACAACGTCACCCCTG
CCGCTGCCAGCCTCATTGATCTATGGCCTGGCAACGGGGAAGAGGCCTCAACACTTCAGG
CTGAACCCAGGGTGCCCACACCACCCTCAGGTGCTGAGGCCTCCCTGGCAGAGGTGCCCC
TGCTGAATGAGGCCGCTCAGGAGCCGCTGCCGCCGGTAGGCGAAGGCTGTGCTAACCTTC
TTAATTTTGATGAGCTGCCAGAACCTCCAGCCACCTTCTGTGACCCAGAGGAGGAAGTAG
GAGAAACGCTGGCTGCCTCCCAGGTCCTAACTATGCCCTCAGCTCTAGAGGAGGTAGATC
AGGTGCTGGAGCAGGAGCTGGAGCCAGAACCTCACCTGCTGACCAATGGAGAGACCACTC
AAAAGGAGGGGACCCAG
INTRON 12 - 13 55,474,559 55,474,859 301
GTGGGACAGGGGGAGCCTGGTGGGA..........AAAACCAAATAACAAACCCCAGCAG
13 EXON 13 55,474,456 55,474,558 0 1 103
GCCAGCGAAGGATACTTCAGTCAGTCACAGGAGGAAGAGTTCGCCCAATCAGAAGAGCCA
TGTGCAAAGGTTCCGCCTCCTGTATTTTACAACAAGCCTCCAG
INTRON 13 - 14 55,474,294 55,474,455 162
GTAGTATCCCCGGGTGAATGATGGG..........TCTCTCTTCTCTCAATATATCCTAG
14 EXON 14 55,473,429 55,474,293 1 - 865
AAATCGACATCACCTGCTGGGATGCAGACCCAGTTCCTGAAGAGGAAGAGGGCTTCGAGG
GTGGTGATTAGTAGCGGCGACTGCCCCCTGGCTGCCCTCGCCAAGGCTGCCTACCTGCAG
TGGCCTCTGGCCAGCCGGCTTGCAGTGCCAGCATTAGCAGCAGCCCCGCCTGGCTCCCAC
TCTGGATTCCGGCACTGGCCGGGGACCTGTCTGCTTCCTTACCCACAGGGCCTGACTTTT
ACAGCTTTTCTCTTTTTTTTAAAAGTTGATAGACTTGTACAATTGACTGGTTTTCCTCCC
GTTGGTAGTTGAAACAATGTTGCAGATTCCACCCCCTTCCTGCCCAGACCAGATTGTAGC
TTAGTTCTTTCTGCTCAGCTGACCAGGGTGGAGGCCTCACCTTGTTTGGGACCTGGTGGG
GGTCGGGGGTTCTGGTGGGAAAATGTTCCCCCCATCACTTTTCCTAGTTTTATGTTTCTT
GGAAAAAAAATCACTTTGTATTCTCTATCCAGGGCTTCAGATATTTTGCACGAAATTTAA
AACATGGCAATAAATGGCTCGTGGGCTCTGGCTCCCTGGGACCCTTCCCCTTCTCTTTAC
CCTCGCTGCTTGGTCAGAAGGAATTATCAGACCCACCTGGGGCCCCTTGGCTTCCCGCCC
TCTCCTGCCGGGCAGGTCCCAGGCTGGAGGTCCTAGGCATGACTCAAGTCAGGGCTTATT
GATGGGACCCAGTGGTTTGGGTGGCCCCTCCCCAATTCCTTCCTCTCTGCTTGGGTTCTT
TTTCACATTAACTTTTTTTTTTTTTCTAAGCACAAACTTATGTAATGGGTCGTGCTCATG
TCTGTTAATAAAGAAATCCAGATCC
3' upstream sequence
CTTCGGGCCTGCTGCTCTGGGCCTCCAGGGGTTGATCTGGCGTGGGCGCCGGCCCTCACG
ACCAGCTTCCCAACTCCTGTCACCTCCGAGGCTACAGGGGGCGCACAAAAACAGGTTAGG
AGGAGACGGAACATTAAGCCCTTGAGAAACAACCTTTGGTTTCCGAACACCAGCCCTCTG
CTCTCAAGGCCAGGACTCGGGCACTTTCCCTAAAGTCCACATGCCCGGTCACTAGCACCT
TGTGCTTAAAGCAGCTGGTATCCCCCTCCGCTTGTACCAAAGCAGATCACACACCTTTAT
TATCCTCAAAATGTAACAAACAGGGTAAGAAATCCCTCCCTCCCCCCCACCCCTCCCTGC
AGTCCAAGGGAAGCATTTAAAAAGCCTCGCAGTCAGGCTAGGAGTTCGCCCGTGGGGCTC
GGGACGCCGGGCGCCCCTCTATACGGCTGTAGTCCTCCCGAACAAGGGGATGGAGACCGG
CAGACGCCAAGCTCCGTGCTCCAGGGGCTCTCGGCTGCTGAGCTCTGAGTCGGTCCAGCT
GGGGAAAACCCGGCGGCTGCGTTCCGCCTGCAGACAGAGGGCAGGGCAGGGTGCGGCGGG
CCGCGGGGCGCTGGGAAGATGCAGCGCCGAAGTATAGCCCCGGTCCAGGAAGAGAGGCTT
GTAACTCGGAGGCGGCTGCTCCTGCTTCTCCGCGCTGTCGCGGCGGCTCAGAAAGGGCGT
GACGATCTTGCGGTAGAGGCCGCGAGTGTCCGTGAGCACCTCGCTGTAGGGAGGCGGCGG
CTCGGCCATCAGCACCGCCTCCTCGTAGCACGGCGGCTTAGACATGTCCGATTCCGCTGC
GGAACGGGAAGCGGGCTGGTGAGGATGAAGCCGCCGGCCCGGGGCAGAAGCCTCGCCCAG
CCACCACCACCCCAGCCCGCTTCTCCCGGTGCTAAGGGTGGGGCGCCTCCGGCATGGGCA
GGGAGCGCTCGCCTGCCGAAACGCAGCCTTACCTTGGCGC..........

Sequence Detail Report

Gene Symbol (Gene ID) Dbn1 (ENSMUSG00000034675)
Transcript ID ENSMUST00000109923
SNP Information
Strain :
Sequence Retrieve :
Exon translate :
CDS Start ( 1 ) - End ( 661 )
-
Strand : forward reverse
Show sequence : nucleotide amino acid
Color information