MoG+ -Mouse Genome database with high added value-

Target CDS Information

Gene Symbol (Gene ID)

Simc1 (ENSMUSG00000043183)

Cross Reference

EMBL	AC155262, AC165145
GO	GO:0005575, GO:0008150, GO:0032184
goslim_goa	GO:0003674, GO:0005575, GO:0008150, ...show all
MGI_trans_name	Simc1-002
OTTP	OTTMUSP00000034690
OTTT	OTTMUST00000068549
UCSC	uc007qoe.2
UniParc	UPI0001611555
Uniprot/SPTREMBL	E9PYI6
Vega_transcript	OTTMUST00000068549, Simc1-002

Vega_translation

214481, OTTMUSP00000034690

Definition

protein_id:ENSMUSP00000112376
translation:

MEDFIVISDDSGSESSAGTRSGRARRLRRALSRTPGALPRRTVSKGQKLEPIPHRRLRMV
TNTIEENFPLGTVQFLMDFVSPQHYPPREIVAHIVQKILLSGSETVDVLKEAYMLLMKIQ
QLHPANAKTVEWDWKLLTYVMEEEGQTLPGRVLFLRYVVQTLEDDFQQILRRQRQHLQQS
IANTVLSCDKQPHNVRDVIKWLVKAVTENELTPPQDETQTSPRTGVLKTSSDHLSPRPNQ
NKNTNQLIVCQLQRMLSIAVEVDRTPTCSSNKIAEMMFGFVLDIPERSQREMFFTTMESH
LLRCKVLEIIFLHSCETPTRLPLSLAQTLYFLNNSTSLLKCQSDKTQWQTWDELVEHLQF
LLSSYQHVLREHLRSSVIDRKDLIIKRIKPKPQQGDDITVLDVEKQIEAFRSRLVHILGE
PLVPQLQDKVHLLKLLLFYAADLNPDTEPASEH

Chromosome

Length
Position(start - end)

46,756
54,503,876 - 54,550,633

Orient to Chromosome

plus

Link

Location : (13:54503876-54550633)
/

Detail Map

name	Simc1 (ENSMUSG00000043183)
type	gene
link	VEGA Ensembl MGI
xref
definition	locus_tag : Simc1 note : SUMO-interacting motifs containing 1 [Source:MGI Symbol;Acc:MGI:2442599]

name	4833439L19Rik (ENSMUSG00000025871)
type	gene
link	VEGA Ensembl MGI
xref
definition	locus_tag : 4833439L19Rik note : RIKEN cDNA 4833439L19 gene [Source:MGI Symbol;Acc:MGI:1921162]

name	Simc1 (ENSMUSG00000043183)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000121401

name	Simc1 (ENSMUSG00000043183)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000118072

name	Simc1 (ENSMUSG00000043183)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000159721

name	Simc1 (ENSMUSG00000043183)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000138869

name	4833439L19Rik (ENSMUSG00000025871)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000026989

name	4833439L19Rik (ENSMUSG00000025871)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000153065

name	Simc1 (ENSMUSG00000043183) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	CCDS:CCDS26528.2 RefSeq_peptide:NP_795961 RefSeq_mRNA:NM_176987.4 RefSeq_mRNA_predicted:XM_011244528.1 RefSeq_mRNA_predicted:XM_011244530.1 RefSeq_mRNA_predicted:XM_011244531.1 RefSeq_peptide_predicted:XP_011242830.1 RefSeq_peptide_predicted:XP_011242831.1 RefSeq_peptide_predicted:XP_011242832.1 RefSeq_peptide_predicted:XP_011242833.1 Vega_transcript:OTTMUST00000068548 Vega_transcript:Simc1-001 Uniprot/SPTREMBL:E9Q6E9 UCSC:uc007qoe.2 EMBL:AC155262 EMBL:AC165145 GO:GO:0005575 GO:GO:0008150 GO:GO:0032184 MGI_trans_name:Simc1-001 Vega_translation:214480 Vega_translation:OTTMUSP00000034689 goslim_goa:GO:0003674 goslim_goa:GO:0005575 goslim_goa:GO:0008150 goslim_goa:GO:0032182 OTTP:OTTMUSP00000034689 OTTT:OTTMUST00000068548 UniParc:UPI0001611554
definition	note : transcript_id=ENSMUST00000121401 protein_id : ENSMUSP00000113676 translation : MEDFIVISDDSGSESSAGTRSGRARRLRRALSRTPGALPRRTVDFIDLTRENRARTKDRNGLCVIDLTRNEEENRPIATLDLTLEPVASSQKEPTSLQTCTSLSGKEVMEAHEDRGSQPAAQRIINNDPVDLDLLEENLFEGSRPPTSISQDSVYPPEPNCSSITYKGDLSFLTSLQLSSDVSSFSSTSNQRASLPCPQQDVPCQSQGLLCPLQALSCPQTASPCPPRASSCPPQALSCPPQALSCPSQTLQCQLQALPQPPQEVPCSTQNVPCPQQNMPSTPQGLSWHPRHTLYPYQDTLGLPQDVPGRPQNMSYPQDVTQLQDMPWSLHDMPLSLQDVLQSLQDVPPLLGDVPPSPEVMQLPGYVTQTSRDVIQSPAGVTQSLGSMMQSPGSVTQSLRSVMQSSGSVTQSLRSVMQSSGSVTQSLRSVMQSSGSVMQSPGGVTQSLRSVTQSPGGVMQSPGGVMQSPRDVMQSPRDVMQSPRDVMQSPRGVTQSLGSMMQSPGGVMQSLRSVMQSSGGVTQSLRSVMQSPGGVMQSPGGVTQSPRGMIKSPGMMLSPGDVIQSLNSVPQSSRDRMQSAGHVPSASGDAIQSPGGMSPTSRDRMQSPGGVSLATEDSIQLPGGVPLSSDVIQSQGGVPLSSKDRMQSPGGVPPSSGDMIQSQGGVPQSLGDAIQSAGGVPQSSGDAIQSPGGVSLATGDSIQLPGGVPLSSGDVIQSQGGVPRSSRDRMQSPGGVPPSSGGVIQSPGGVSPASGDAIQSPGSVLPASGDAIQSAGGVLLASGDAIQSPRSVPQSPSGTLRSPGNMSESLGDTPNLSGDVSNSPQALLDLARDRPKSSPNDVQNRDTPMDISASSSSSCSANPQSRQSEFKLDKVPWLTITDSSARREKSLPQLANPGSAQIQGQIPQVGVYNRPCLHRLKYFLRPPVHHLFFQTLIPDKDTRESKGQKLEPIPHRRLRMVTNTIEENFPLGTVQFLMDFVSPQHYPPREIVAHIVQKILLSGSETVDVLKEAYMLLMKIQQLHPANAKTVEWDWKLLTYVMEEEGQTLPGRVLFLRYVVQTLEDDFQQILRRQRQHLQQSIANTVLSCDKQPHNVRDVIKWLVKAVTENELTPPQDETQTSPRTGVLKTSSDHLSPRPNQNKNTNQLIVCQLQRMLSIAVEVDRTPTCSSNKIAEMMFGFVLDIPERSQREMFFTTMESHLLRCKVLEIIFLHSCETPTRLPLSLAQTLYFLNNSTSLLKCQSDKTQWQTWDELVEHLQFLLSSYQHVLREHLRSSVIDRKDLIIKRIKPKPQQGDDITVLDVEKQIEAFRSRLVHILGEPLVPQLQDKVHLLKLLLFYAADLNPDTEPASEH

name	Simc1 (ENSMUSG00000043183) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000068549 Vega_transcript:Simc1-002 Uniprot/SPTREMBL:E9PYI6 UCSC:uc007qoe.2 EMBL:AC155262 EMBL:AC165145 GO:GO:0005575 GO:GO:0008150 GO:GO:0032184 MGI_trans_name:Simc1-002 Vega_translation:214481 Vega_translation:OTTMUSP00000034690 goslim_goa:GO:0003674 goslim_goa:GO:0005575 goslim_goa:GO:0008150 goslim_goa:GO:0032182 OTTP:OTTMUSP00000034690 OTTT:OTTMUST00000068549 UniParc:UPI0001611555
definition	note : transcript_id=ENSMUST00000118072 protein_id : ENSMUSP00000112376 translation : MEDFIVISDDSGSESSAGTRSGRARRLRRALSRTPGALPRRTVSKGQKLEPIPHRRLRMVTNTIEENFPLGTVQFLMDFVSPQHYPPREIVAHIVQKILLSGSETVDVLKEAYMLLMKIQQLHPANAKTVEWDWKLLTYVMEEEGQTLPGRVLFLRYVVQTLEDDFQQILRRQRQHLQQSIANTVLSCDKQPHNVRDVIKWLVKAVTENELTPPQDETQTSPRTGVLKTSSDHLSPRPNQNKNTNQLIVCQLQRMLSIAVEVDRTPTCSSNKIAEMMFGFVLDIPERSQREMFFTTMESHLLRCKVLEIIFLHSCETPTRLPLSLAQTLYFLNNSTSLLKCQSDKTQWQTWDELVEHLQFLLSSYQHVLREHLRSSVIDRKDLIIKRIKPKPQQGDDITVLDVEKQIEAFRSRLVHILGEPLVPQLQDKVHLLKLLLFYAADLNPDTEPASEH

name	Simc1 (ENSMUSG00000043183) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000087312 Vega_transcript:Simc1-008 Uniprot/SPTREMBL:E0CX51 EMBL:AC155262 EMBL:AC165145 GO:GO:0005575 GO:GO:0008150 GO:GO:0032184 MGI_trans_name:Simc1-008 Vega_translation:214482 Vega_translation:OTTMUSP00000047379 goslim_goa:GO:0003674 goslim_goa:GO:0005575 goslim_goa:GO:0008150 goslim_goa:GO:0032182 OTTP:OTTMUSP00000047379 OTTT:OTTMUST00000087312 UniParc:UPI0001DD34D4
definition	note : transcript_id=ENSMUST00000159721 protein_id : ENSMUSP00000124921 translation : MEDFIVISDDSGSESSAGTRSGRARRLRRALSRTPGALPRRTVGQTLPGRVLFLRYVVQTLEDDFQQILRRQRQHLQQSIANTVLSCDKQPHNVRDVIKWLVKAVTENELTPPQDETQTSPRTGVLKTSSDHLSPRPNQNKNTNQL

name	Simc1 (ENSMUSG00000043183) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000068550 Vega_transcript:Simc1-003 Uniprot/SPTREMBL:E0CY56 EMBL:AC155262 EMBL:AC165145 GO:GO:0005575 GO:GO:0008150 GO:GO:0032184 MGI_trans_name:Simc1-003 Vega_translation:214483 Vega_translation:OTTMUSP00000047380 goslim_goa:GO:0003674 goslim_goa:GO:0005575 goslim_goa:GO:0008150 goslim_goa:GO:0032182 OTTP:OTTMUSP00000047380 OTTT:OTTMUST00000068550 UniParc:UPI0001DD34D5
definition	note : transcript_id=ENSMUST00000138869 protein_id : ENSMUSP00000124474 translation : MEDFIVISDDSGSESSAGTRSGRARRLRRALSRTPGALPRRTVAASSQCQDSGVGLETAHLCHGGRGTNSAWTSSLSTLRSANPGR

name	4833439L19Rik (ENSMUSG00000025871) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	CCDS:CCDS26529.1 Uniprot/SWISSPROT:Q9DBN4 RefSeq_peptide:NP_598558 RefSeq_mRNA:NM_133797.4 RefSeq_mRNA_predicted:XM_006517478 RefSeq_peptide_predicted:XP_006517541.1 Vega_transcript:OTTMUST00000081236 Vega_transcript:RP23-452K4.2-001 UCSC:uc007qof.3 Fantom:1300002B20 Fantom:4732438K03 Fantom:4833439L19 Fantom:4930558H15 Fantom:G830027I08 Fantom:I420039I05 Fantom:I530025E03 Fantom:I920194N11 Clone_based_vega_transcript:RP23-452K4.2-001 EMBL:AK004845 EMBL:AK014792 EMBL:AK016176 EMBL:AK028697 EMBL:AK145025 EMBL:AK159945 EMBL:AK167616 EMBL:AK169399 EMBL:AK173126 EMBL:BC033445 EMBL:BC039775 EMBL:BC043040 EMBL:BC054417 GO:GO:0003674 GO:GO:0005737 GO:GO:0008150 GO:GO:0016491 GO:GO:0055114 MGI_trans_name:4833439L19Rik-001 Vega_translation:214484 Vega_translation:OTTMUSP00000043419 goslim_goa:GO:0003674 goslim_goa:GO:0005575 goslim_goa:GO:0005622 goslim_goa:GO:0005623 goslim_goa:GO:0005737 goslim_goa:GO:0008150 goslim_goa:GO:0016491 protein_id:AAH33445.1 protein_id:AAH39775.1 protein_id:AAH43040.1 protein_id:AAH54417.1 protein_id:BAB23611.1 protein_id:BAB30137.1 protein_id:BAC25449.1 protein_id:BAC26072.1 protein_id:BAD32404.1 protein_id:BAE26191.1 protein_id:BAE35501.1 protein_id:BAE39669.1 protein_id:BAE41145.1 OTTP:OTTMUSP00000043419 OTTT:OTTMUST00000081236 UniParc:UPI000000B2D7
definition	note : transcript_id=ENSMUST00000026989 protein_id : ENSMUSP00000026989 translation : MASRQPEVPALAPSGPLGKMSLPIGMCRRAFSYDDALEDPAPMTPPPSDMGSIPWKPVIPERKYQHLDKTEEGAASVSSLAVTPSPATDSSDKAPVVKAKATHVIMSSLITKQTQESIQRFEQQAGLRDAGYTPHKGLTTEETKYLRVAEALHKLKLQSGETAKEEKHPASAQSTPSSTPHASPKQKSRGWFPSGSSTALPAPNPHTMDPGSGNDRNSADKWSLFGPRPLQKSDSGFAIQAYKGAPRPSPMEVMRAQATRVGEDPATFKPPKMDVPMVEGKKQPLRTHNLKPRDLNVLTPTGF

name	4833439L19Rik (ENSMUSG00000025871) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	CCDS:CCDS56882.1 RefSeq_peptide:NP_001239574 RefSeq_peptide:NP_001239575 RefSeq_mRNA:NM_001252645.1 RefSeq_mRNA:NM_001252646.1 Vega_transcript:OTTMUST00000081237 Vega_transcript:RP23-452K4.2-002 Uniprot/SPTREMBL:D3Z1F7 UCSC:uc029sbj.1 Clone_based_vega_transcript:RP23-452K4.2-002 EMBL:AC155262 EMBL:CH466546 GO:GO:0003674 GO:GO:0008150 MGI_trans_name:4833439L19Rik-002 Vega_translation:214485 Vega_translation:OTTMUSP00000043420 goslim_goa:GO:0003674 goslim_goa:GO:0008150 protein_id:EDL41141.1 OTTP:OTTMUSP00000043420 OTTT:OTTMUST00000081237 UniParc:UPI00001E82A1
definition	note : transcript_id=ENSMUST00000153065 protein_id : ENSMUSP00000119874 translation : MSLPIGMCRRAFSYDDALEDPAPMTPPPSDMGSIPWKPVIPERKYQHLDKTEEGAASVSSLAVTPSPATDSSDKAPVVKAKATHVIMSSLITKQTQESIQRFEQQAGLRDAGYTPHKGLTTEETKYLRVAEALHKLKLQSGETAKEEKHPASAQSTPSSTPHASPKQKSRGWFPSGSSTALPAPNPHTMDPGSGNDRNSADKWSLFGPRPLQKSDSGFAIQAYKGAPRPSPMEVMRAQATRVGEDPATFKPPKMDVPMVEGKKQPLRTHNLKPRDLNVLTPTGF

name
type	STS
link
xref	UniSTS_NUM:208931 UniSTS:BB243981 WI_MRC-RH:1252845
definition	note : map_weight=1 standard_name : BB243981

name
type	STS
link
xref	UniSTS_NUM:208769 UniSTS:C81457 UniSTS:RH127085
definition	note : map_weight=2 standard_name : RH127085

name
type	misc_feature
link
xref
definition	note : contig AC165145.2 35211..181942(1)

name
type	misc_feature
link
xref
definition	note : contig AC155262.2 75073..168429(1)

name	Simc1 (ENSMUSG00000043183)
type	misc_RNA
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000068552 Vega_transcript:OTTMUST00000068552 MGI_trans_name:Simc1-005 OTTT:OTTMUST00000068552
definition	note : processed_transcript note : transcript_id=ENSMUST00000123852

name	Simc1 (ENSMUSG00000043183)
type	misc_RNA
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000068553 Vega_transcript:OTTMUST00000068553 MGI_trans_name:Simc1-006 OTTT:OTTMUST00000068553
definition	note : retained_intron note : transcript_id=ENSMUST00000150011

name	Simc1 (ENSMUSG00000043183)
type	misc_RNA
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000068554 Vega_transcript:OTTMUST00000068554 MGI_trans_name:Simc1-007 OTTT:OTTMUST00000068554
definition	note : retained_intron note : transcript_id=ENSMUST00000126506

name	4833439L19Rik (ENSMUSG00000025871)
type	misc_RNA
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000081238 Vega_transcript:OTTMUST00000081238 UCSC:uc007qoi.3 Clone_based_vega_transcript:RP23-452K4.2-003 MGI_trans_name:4833439L19Rik-003 OTTT:OTTMUST00000081238
definition	note : processed_transcript note : transcript_id=ENSMUST00000153708

Polymorphisms Report

Target Strain	MSMv4 JF1v3 KJRv1 SWNv1 CHDv1 NJLv1 BLG2v1 HMIv1 BFMv1 PGN2v1

Gene Symbol (Gene ID)	Simc1 (ENSMUSG00000043183)
Transcript ID	ENSMUST00000118072

Reports
substitution
cSNPs	1
Insertion	24
Deletion	52
SNPs	-1kb 54499115(c.-4761A>G), 54499207(c.-4669A>G), 54499312(c.-4564C>T), 54499313(c.-4563A>G), 54499407(c.-4469G>A), 54499742(c.-4134G>A), 54499839(c.-4037C>T), 54499840(c.-4036A>G), 54499929(c.-3947T>C), 54500082(c.-3794T>C), 54500470(c.-3406C>T), 54500602(c.-3274C>T), 54501263(c.-2613C>T), 54501400(c.-2476T>C), 54501425(c.-2451T>G), 54501711(c.-2165G>A), 54501768(c.-2108A>G), 54502223(c.-1653T>A), 54502256(c.-1620G>T), 54502257(c.-1619T>G), 54502527(c.-1349A>G), 54502534(c.-1342G>C), 54502703(c.-1173T>C), 54502735(c.-1141G>A), 54503060(c.-816T>C), 54503110(c.-766C>T), 54503778(c.-98T>G), 5'UTR CDS 54547266(c.1038G>C), 3'UTR 54550675(c.42T>C), 54550680(c.47A>G), 54551287(c.654A>T), INTRON 54504390(c.129+386A>G), 54504769(c.129+765G>A), 54504802(c.129+798G>A), 54504808(c.129+804A>G), 54504812(c.129+808C>G), 54504813(c.129+809A>T), 54504877(c.129+873C>T), 54505028(c.129+1024G>A), 54505165(c.129+1161G>A), 54505174(c.129+1170C>G), 54505277(c.129+1273T>C), 54505280(c.129+1276G>C), 54505431(c.129+1427T>C), 54505648(c.129+1644G>A), 54506161(c.129+2157G>A), 54506292(c.129+2288A>G), 54506316(c.129+2312G>A), 54506394(c.129+2390T>C), 54506407(c.129+2403G>T), 54506425(c.129+2421C>G), 54506470(c.129+2466G>A), 54507178(c.129+3174A>G), 54507369(c.129+3365A>G), 54507370(c.129+3366T>C), 54507373(c.129+3369A>T), 54507383(c.129+3379T>G), 54507472(c.129+3468A>G), 54507583(c.129+3579A>G), 54507763(c.129+3759A>G), 54507886(c.129+3882A>G), 54507961(c.129+3957A>G), 54508690(c.129+4686T>C), 54508852(c.129+4848G>A), 54508857(c.129+4853T>C), 54508999(c.129+4995C>A), 54509087(c.129+5083T>C), 54509185(c.129+5181C>G), 54509385(c.129+5381G>T), 54509406(c.129+5402G>T), 54509428(c.129+5424A>C), 54509465(c.129+5461C>T), 54509577(c.129+5573A>T), 54509603(c.129+5599C>T), 54509631(c.129+5627A>G), 54509834(c.129+5830T>A), 54509958(c.129+5954A>G), 54510000(c.129+5996G>T), 54510014(c.129+6010G>A), 54510072(c.129+6068A>G), 54510102(c.129+6098G>T), 54510116(c.129+6112A>G), 54510147(c.129+6143T>C), 54510160(c.129+6156G>A), 54510162(c.129+6158G>A), 54510206(c.129+6202T>C), 54510273(c.129+6269C>A), 54510426(c.129+6422C>T), 54510766(c.129+6762G>T), 54510883(c.129+6879A>T), 54510939(c.129+6935C>T), 54511338(c.129+7334A>G), 54511355(c.129+7351A>G), 54511406(c.129+7402G>A), 54511468(c.129+7464T>C), 54511496(c.129+7492C>T), 54511497(c.129+7493C>A), 54511596(c.129+7592A>G), 54511798(c.129+7794C>G), 54511807(c.129+7803G>A), 54511946(c.129+7942C>T), 54512043(c.129+8039C>T), 54512054(c.129+8050C>T), 54512757(c.129+8753T>C), 54512791(c.129+8787G>A), 54513002(c.129+8998C>A), 54513124(c.129+9120G>A), 54513692(c.129+9688A>T), 54513823(c.129+9819C>T), 54514266(c.129+10262A>G), 54515134(c.129+11130C>T), 54515142(c.129+11138C>T), 54515240(c.129+11236G>A), 54515500(c.129+11496G>A), 54516002(c.129+11998A>G), 54516712(c.130-11592G>A), 54517168(c.130-11136T>A), 54518378(c.130-9926T>C), 54518492(c.130-9812G>T), 54518745(c.130-9559T>A), 54518842(c.130-9462A>G), 54519073(c.130-9231T>C), 54519182(c.130-9122T>G), 54519232(c.130-9072G>A), 54519336(c.130-8968A>G), 54519362(c.130-8942A>G), 54519587(c.130-8717G>A), 54519588(c.130-8716C>G), 54519874(c.130-8430G>A), 54520040(c.130-8264C>A), 54520145(c.130-8159C>T), 54520270(c.130-8034T>G), 54520976(c.130-7328T>C), 54521203(c.130-7101T>C), 54521393(c.130-6911G>T), 54521492(c.130-6812T>C), 54522136(c.130-6168A>G), 54522190(c.130-6114G>T), 54522526(c.130-5778A>G), 54522803(c.130-5501A>C), 54522877(c.130-5427G>A), 54523305(c.130-4999C>T), 54523454(c.130-4850C>T), 54523519(c.130-4785T>C), 54523520(c.130-4784G>T), 54523521(c.130-4783C>T), 54523597(c.130-4707C>G), 54523709(c.130-4595G>A), 54523805(c.130-4499T>C), 54524330(c.130-3974A>G), 54524985(c.130-3319C>T), 54525014(c.130-3290C>T), 54525017(c.130-3287G>A), 54525021(c.130-3283G>A), 54525132(c.130-3172T>C), 54525195(c.130-3109C>T), 54525203(c.130-3101C>T), 54525209(c.130-3095G>A), 54525214(c.130-3090G>A), 54525227(c.130-3077G>A), 54525228(c.130-3076G>A), 54525231(c.130-3073G>A), 54525235(c.130-3069A>G), 54525249(c.130-3055G>A), 54525571(c.130-2733G>A), 54525756(c.130-2548C>A), 54525786(c.130-2518C>T), 54526281(c.130-2023C>T), 54526500(c.130-1804G>A), 54526928(c.130-1376G>C), 54526939(c.130-1365T>G), 54527221(c.130-1083C>T), 54527538(c.130-766A>G), 54527950(c.130-354G>C), 54527976(c.130-328A>T), 54530054(c.432+831A>G), 54530417(c.432+1194A>G), 54530689(c.432+1466A>G), 54531594(c.432+2371G>C), 54531695(c.432+2472T>C), 54532137(c.432+2914A>G), 54532151(c.432+2928T>C), 54532248(c.432+3025G>A), 54532254(c.432+3031T>C), 54533337(c.433-3745C>T), 54533338(c.433-3744A>C), 54533516(c.433-3566A>G), 54533631(c.433-3451G>A), 54533681(c.433-3401C>T), 54533781(c.433-3301A>C), 54533964(c.433-3118G>A), 54534294(c.433-2788G>C), 54534333(c.433-2749G>A), 54534403(c.433-2679T>G), 54534452(c.433-2630T>G), 54534583(c.433-2499C>T), 54534765(c.433-2317C>A), 54535565(c.433-1517G>C), 54535585(c.433-1497C>T), 54536005(c.433-1077G>A), 54536051(c.433-1031T>C), 54536564(c.433-518T>C), 54536580(c.433-502C>T), 54536633(c.433-449C>T), 54536733(c.433-349C>T), 54536816(c.433-266C>A), 54536919(c.433-163C>A), 54537008(c.433-74G>T), 54537372(c.587+136T>C), 54537487(c.587+251C>G), 54537623(c.587+387T>A), 54537655(c.587+419G>A), 54537719(c.587+483G>A), 54537792(c.587+556G>T), 54537926(c.587+690G>A), 54537985(c.587+749C>A), 54538035(c.587+799C>T), 54538068(c.587+832C>T), 54538140(c.587+904A>G), 54538149(c.587+913T>C), 54538161(c.587+925C>T), 54538199(c.587+963T>G), 54538287(c.587+1051A>G), 54538731(c.588-973G>T), 54539180(c.588-524A>G), 54539205(c.588-499T>C), 54539224(c.588-480T>G), 54539364(c.588-340G>A), 54539418(c.588-286C>T), 54539461(c.588-243C>T), 54539525(c.588-179C>T), 54539896(c.740+40A>G), 54539953(c.740+97A>C), 54539984(c.740+128A>G), 54540248(c.740+392G>A), 54541094(c.741-330T>C), 54541143(c.741-281G>C), 54541953(c.869+401A>G), 54542477(c.869+925T>G), 54542523(c.869+971A>G), 54542589(c.869+1037A>T), 54542603(c.869+1051T>C), 54542665(c.869+1113T>C), 54542732(c.869+1180C>T), 54542772(c.869+1220G>A), 54542960(c.869+1408C>T), 54542961(c.869+1409A>G), 54542990(c.869+1438A>G), 54543138(c.869+1586T>G), 54543307(c.869+1755G>A), 54543465(c.869+1913C>G), 54543590(c.869+2038C>T), 54543668(c.869+2116T>G), 54544001(c.869+2449A>G), 54544117(c.869+2565T>C), 54546893(c.870-84C>T), 54546919(c.870-58A>C), 54547210(c.1027-45A>T), 54547360(c.1111+21A>G), 54547459(c.1111+120G>A), 54547908(c.1111+569A>C), 54547909(c.1111+570G>A), 54548006(c.1111+667C>A), 54548129(c.1111+790G>T), 54548265(c.1111+926T>C), 54548279(c.1111+940C>T), 54548682(c.1111+1343C>G), 54549142(c.1112-1241T>A), 54549182(c.1112-1201T>A), 54549204(c.1112-1179T>A), 54549242(c.1112-1141T>C), 54549421(c.1112-962A>G), 54549619(c.1112-764C>T), +1kb 54551313(c.680C>A), 54551552(c.919C>T), 54551597(c.964G>A), 54551674(c.1041A>C), 54551711(c.1078A>C), 54551772(c.1139G>A), 54551907(c.1274A>G), 54551912(c.1279G>A), 54551918(c.1285A>G), 54552034(c.1401T>C), 54552178(c.1545T>G), 54552180(c.1547G>T), 54552329(c.1696T>A), 54552331(c.1698T>A), 54552339(c.1706G>A), 54552362(c.1729C>T), 54553394(c.2761T>C), 54553418(c.2785T>C), 54553530(c.2897G>A), 54553639(c.3006A>G), 54553652(c.3019T>C), 54553679(c.3046A>T), 54553681(c.3048G>C), 54553788(c.3155T>C), 54553865(c.3232G>T), 54553991(c.3358T>C), 54554002(c.3369A>G), 54554104(c.3471G>A), 54554120(c.3487T>C), 54554145(c.3512T>C), 54554160(c.3527G>A), 54554166(c.3533A>G), 54555653(c.5020G>A), 54555677(c.5044C>A), 54555685(c.5052T>C), 54555707(c.5074A>G), 54555718(c.5085C>T), 54555859(c.5226A>G), 54555929(c.5296C>T), 54555951(c.5318A>T), 54555952(c.5319G>A), 54555986(c.5353C>T), 54556120(c.5487G>A), 54556121(c.5488T>C), 54556136(c.5503G>A), 54556210(c.5577T>C), 54556238(c.5605G>A),
Insertions	-1kb 54499428 (c.-4448_-4447insGG), 54499577 (c.-4299_-4298insTTTT), 54501871 (c.-2005_-2004insTTG), 54502270 (c.-1606_-1605insGGTG), 5'UTR 54503834 (c.-32_-26dupCGCTCGC), CDS 3'UTR INTRON 54505113 (c.129+1109_129+1110insA), 54506454 (c.129+2451_129+2452insCT), 54506736 (c.129+2732_129+2733insGATCCA), 54507499 (c.129+3495_129+3496insTTC), 54508192 (c.129+4195dupT), 54508811 (c.129+4807_129+4808insAA), 54509586 (c.129+5582_129+5583dupTT), 54511005 (c.129+7003_129+7004insGGCTCA), 54518631 (c.130-9668_130-9667insAAGAGA), 54520617 (c.130-7672_130-7669dupCAAA), 54521117 (c.130-7185dupT), 54531978 (c.432+2756_432+2757insTGGA), 54534153 (c.433-2929_433-2928insCC), 54535168 (c.433-1906dupG), 54537330 (c.587+93_587+94dupTG), 54541762 (c.869+210dupA), 54549204 (c.1112-1171dupA), 54549768 (c.1112-614_1112-613insGCCCCT), 54549943 (c.1112-438_1112-437insATA), +1kb
Deletions	-1kb 54500748 (c.-3127delA), 54501175 (c.-2700_-2696delTTTTG), 54502064 (c.-1811_-1810delAA), 5'UTR CDS 3'UTR INTRON 54504314 (c.129+316delG), 54504760 (c.129+758delC), 54507237 (c.129+3234delA), 54507268 (c.129+3268delG), 54507271 (c.129+3268delG), 54507744 (c.129+3751_129+3753delAAA), 54509514 (c.129+5511delA), 54509620 (c.129+5617_129+5620delTATA), 54509789 (c.129+5786delT), 54509845 (c.129+5842_129+5844delAGG), 54510103 (c.129+6100delG), 54510166 (c.129+6163delA), 54510387 (c.129+6385delA), 54511999 (c.129+8008_129+8010delAAA), 54513959 (c.129+9963_129+9964delTT), 54514243 (c.129+10251delA), 54519662 (c.130-8639_130-8632delGTAATGGT), 54521616 (c.130-6687delT), 54521653 (c.130-6646_130-6645delAC), 54521657 (c.130-6646_130-6645delAC), 54523671 (c.130-4632delG), 54523683 (c.130-4620_130-4619delGG), 54523721 (c.130-4574delA), 54530032 (c.432+819delA), 54530621 (c.432+1405delG), 54530627 (c.432+1405delG), 54530663 (c.432+1441_432+1446delCTTCTT), 54531557 (c.432+2343_432+2348delGCTTGG), 54533052 (c.432+3830_432+3837delACATACAT), 54534097 (c.433-2984_433-2974delACTCTTCCCCC), 54534953 (c.433-2120_433-2119delAA), 54536238 (c.433-843_433-839delCACAG), 54536275 (c.433-806_433-801delCACAGT), 54537353 (c.587+126_587+129delAGAG), 54537361 (c.587+126_587+129delAGAG), 54537810 (c.587+584_587+589delTATATA), 54539994 (c.740+139_740+141delAAG), 54540002 (c.740+147_740+148delGA), 54540092 (c.740+240delG), 54540095 (c.740+240delG), 54542556 (c.869+1033_869+1040delACACACAC), 54544406 (c.870-2567_870-2565delCTC), 54548900 (c.1112-1479_1112-1476delCCTC), 54548988 (c.1112-1394_1112-1392delCTC), 54549731 (c.1112-651_1112-649delGGG), +1kb 54552430 (c.1798_1799delAA), 54553060 (c.2428delA), 54555579 (c.4947_4953delAAAAAAA), 54555592 (c.4960_*4963delAAAA),
coding sequence substitutions
premature termination by the nucleotide substitution	0
synonymous num	1
non-synonymous num	0
synonymous substitutions	54547266 (p.Thr346Thr),
non-synonymous substitutions
B6 transcript (ENSMUST00000118072)	MEDFIVISDDSGSESSAGTRSGRARRLRRALSRTPGALPRRTVSKGQKLEPIPHRRLRMV TNTIEENFPLGTVQFLMDFVSPQHYPPREIVAHIVQKILLSGSETVDVLKEAYMLLMKIQ QLHPANAKTVEWDWKLLTYVMEEEGQTLPGRVLFLRYVVQTLEDDFQQILRRQRQHLQQS IANTVLSCDKQPHNVRDVIKWLVKAVTENELTPPQDETQTSPRTGVLKTSSDHLSPRPNQ NKNTNQLIVCQLQRMLSIAVEVDRTPTCSSNKIAEMMFGFVLDIPERSQREMFFTTMESH LLRCKVLEIIFLHSCETPTRLPLSLAQTLYFLNNSTSLLKCQSDKTQWQTWDELVEHLQF LLSSYQHVLREHLRSSVIDRKDLIIKRIKPKPQQGDDITVLDVEKQIEAFRSRLVHILGE PLVPQLQDKVHLLKLLLFYAADLNPDTEPASEH*
MSMv4 transcript	MEDFIVISDDSGSESSAGTRSGRARRLRRALSRTPGALPRRTVSKGQKLEPIPHRRLRMV TNTIEENFPLGTVQFLMDFVSPQHYPPREIVAHIVQKILLSGSETVDVLKEAYMLLMKIQ QLHPANAKTVEWDWKLLTYVMEEEGQTLPGRVLFLRYVVQTLEDDFQQILRRQRQHLQQS IANTVLSCDKQPHNVRDVIKWLVKAVTENELTPPQDETQTSPRTGVLKTSSDHLSPRPNQ NKNTNQLIVCQLQRMLSIAVEVDRTPTCSSNKIAEMMFGFVLDIPERSQREMFFTTMESH LLRCKVLEIIFLHSCETPTRLPLSLAQTLYFLNNSTSLLKCQSDKTQWQTWDELVEHLQF LLSSYQHVLREHLRSSVIDRKDLIIKRIKPKPQQGDDITVLDVEKQIEAFRSRLVHILGE PLVPQLQDKVHLLKLLLFYAADLNPDTEPASEH*
homology	100.00 (454 / 454)

Exon Detail Report

Target Strain	MSMv4 JF1v3 KJRv1 SWNv1 CHDv1 NJLv1 BLG2v1 HMIv1 BFMv1 PGN2v1

Gene Symbol (Gene ID)	Simc1 (ENSMUSG00000043183)
Transcript ID	ENSMUST00000118072


..........CCTTTTTGTTAAAGACATTTTATTATTCTATTTTTTGAAGTTACTTGAGC
ATAAGCAGCAGGGTTTTGTCAGTATTGCACATTTTTAAAATAGCCATGGGCCCTATTTTG
ATTTAATGTCCCTACCCTTCAACAAAACAACCAAAGAATTCACTACTTACCCATATTTCC
CTCTGATGGGGATACAATTTTATCCCTATATTTTCTGCTTGCTCACAGCATTGGAGTATA
CGGGCACTCTGGGACCTCATAGCTCTCTGTATGTGCCTTTTCAGTGGTTTCCGTCAACTA
GAAACTCAACAAACTCTTACATCTGACAGTTTAAATTCCTGTGACACGTATTGTTGGTGA
AACCGCAAATCGGCACAACTTAAGACAATTTGGTACCATTTGTCAAAATAACAATAAAAA
CATAGATTTGATCCAATAAACCTGCTTCTGGGAATTTATCCCACGGATTTACCTGCACAC
ACAAGAGTGGGTATCTCTCCCTTATCTCAGCCAGAAGCCCCAGTCAATAAAACCCTAGGT
TCAGGTTACCCTTTTCAGCCCCTCAGGGCTTCTTTAACCCGAAGGCGTCACTGCTCCTTC
TGCCAGGTGCAGGCTCCACTACCGGGTCAATTAAATGCGCTATCAGAGGCTCCATCAGCT
CACTCCAGTCCTCACACCTGCAGCCAGGGGCTCGTCACCAGCACTGCCCACTGTGATCGG
TTGAGAGCGGCGGCGGACAACCTCTCAACCTCAGCGTTTTTCAAGCCCGCCGACCATGCG
GCCCAGCCCCTCGGTTCTATCCCTCCCTTTCCCTCTCTTCCCTCTCTCTCCTTCTCTGAG
GGAAAGGGAGCCTGGCTCCTCCAGGGTTCTGTGACACTGCCCTGACCCGGGCGCGCGGCT
GCCCCCGAGATAGGCGGGGCTCCGAGCGGGACCGGTCCTCTGGAGGCGGGGCGCGGTGGG
GGCGGGGCAATGGAGGGGGCGGGGCCGGCGGGGTACTAACCCCGGTGTCG
GCGACGCCTTCGCTGCAGTCGCTTCAGCAGCTGGAACCGGAGTCGGAGTCGCCGGGGCCGCTCGCCGCTCGCGCGTGGCTCCGCCGGGCCCGTAGCCATGGAGGACTTTATCGTGATCTCCGACGACAGTGGCTCCGAGAGCTCGGCCGGGACCCGCTCGGGCAGGGCGCGGAGGCTGCGCCGGGCCCTGTCTCGGACCCCCGGCGCGCTGCCCCGCCGAACCGTG
GTGAGTGAATCCACTGCCGCTCGCC..........CCTATCTATCTCTTTGTCTCTACAG
AGCAAGGGTCAGAAATTAGAACCCATCCCTCATCGAAGACTAAGAATGGTGACAAACACTATTGAAGAAAACTTCCCTTTGGGGACTGTGCAGTTTTTAATGGACTTTGTTTCACCCCAACATTACCCACCCAGAGAAATTGTGGCTCACATCGTCCAGAAAATCCTGCTCAGTGGCTCTGAGACTGTGGATGTCCTCAAGGAGGCCTACATGCTTCTCATGAAAATCCAACA
GTATGAACCATTACAGTGGGTTGGC..........CTAATTGATGTCACTTGACTTTCAG
GCTGCATCCAGCCAATGCCAAGACAGTGGAGTGGGACTGGAAACTGCTCACCTATGTCATGGAGGAAGAG
GTAACATAAATTATAAGGACATATC..........TGACTTCTTATTCTTTTTTCCACAG
GGACAAACTCTGCCTGGACGAGTTCTCTTTCTACGCTACGTAGTGCAAACCCTGGAAGATGACTTCCAGCAGATCTTGAGGAGACAGCGGCAGCACCTACAGCAATCCATTGCAAACACTGTTCTGTCATGTGACAAACAGCCTCACAATGTCAG
GTAATGAGATACTAGAGCTCTGGTA..........CTTTTTTATCTCTTCTTTATTCCAG
AGATGTTATTAAGTGGCTGGTCAAAGCAGTGACTGAAAATGAATTAACTCCACCCCAAGATGAGACTCAGACCTCTCCAAGAACAGGAGTCTTGAAAACTAGCAGTGACCATCTGTCTCCCCGGCCTAACCAGAACAAGAACACCAATCAACT
GTAAGGAGCAAGCAAAGAATTGTCT..........TGTGTCTCCTGTGTTCTGGATCCAG
GATTGTGTGTCAGCTTCAGAGGATGTTGTCCATCGCTGTAGAGGTGGACAGGACTCCAACCTGCAGCTCCAATAAAATAGCGGAGATGATGTTTGGGTTTGTGCTGGATATCCCTGAGAGGAGCCAGAG
GTGAGTGTAGTTTGAGCATTTGTTT..........GGGTAACTCCCTCTTGTCCACACAG
GGAGATGTTCTTTACTACCATGGAAAGCCACCTTCTGCGATGCAAAGTCCTGGAGATCATATTCCTGCACAGCTGTGAGACACCCACCCGTCTCCCCTTGTCTCTGGCCCAGACCCTCTATTTTCTGAACAACTCCACGTCCCTGCTCAAGTGTCAA
GTATGTTCCTTCCTGCTTCAGAACA..........CCCGCTGCTTTTACTGTCTCTGCAG
TCAGATAAAACCCAGTGGCAGACATGGGATGAGCTGGTTGAACATCTGCAGTTCCTGCTGTCCAGTTATCAACACGTGCTGAGAG
GTAAGGAGCACTTGCTCACAGCAAT..........TTGTTTGATTCCTTCCCGCTTGCAG
AGCACCTACGGAGCTCAGTGATTGATCGGAAAGACTTAATCATCAAAAGAATTAAGCCCAAGCCCCAACAAGGAGATGACATCACGGTGCTGGATGTGGAGAAGCAGATCGAGGCCTTCCGCAGCCGCCTGGTCCACATATTGGGAGAACCTTTAGTCCCCCAGCTCCAAGACAAAGTGCATTTGTTGAAGCTGCTGCTCTTCTATGCTGCGGACTTGAACCCCGACACAGAGCCTGCTTCAGAGCACTGAGGCAGCCAGACTTCTAAGCACTGCGCACCAAGAATACCTCCCGACTGCCGCCAGCTACTTAGAAGCCCTGAAGTATGAACAGTAGTTAGGAACATCATAGGACCAAACCTATCTTATTTATCAGTAGGTTGTAATAACTTTGTAACTCTTCAGTATATATTTTTTTTATAATCTTTATCCTAGCCTATTCAAATTTGGCTTAAATATACAAGGTGTATATATTTTTTATTAAATTATTTATCTATGCTTTTGAAACAGGCAGTGATATGCACTATATGTCCAACATTTCCATGCAAGATGTGAAAGAACCCTTCTGCACAATCCATCAGTGTTACACTGGTCAAGATACTGACGGCCCGCTCGGCCCAGCTCTGAAAAAAACATTAGTTTTTCCTGAATAGACCATGTTCTATACTAGACTTTTTATATTGCCCATAAATATGACTCTGTGGCCAGTTTATTAAGTCTAACAAAGCAGGCAAAGAAACAAGAGCCTGTCAAACCTGTGGTGTTAATAAGATAGAATAAGATGTTTACAGTGCTTGGGCTCCACTATGGGGCAGGCAGAATGGACAAGACAGACCTGGGCTTGAGAAAGTAGTAAAGATTTTTATTTGTCAATACAAGATAACACAAATAAATTAATTTTTACATCAA
TCTTAGACTCCAGGGCTTCTCTATGAGGTTAGCTCATTATGTAAATAGCCTACTTACTAT
CTAAAGTGATCGAGCAATCATATGTTGAGTGTTCGAGACCAACAGGCTGTGAACAATGAG
GAGACACAAAAGGGCACTTCCTTGCCTCCTTTCCTCGGTAAGATGTGTTACTGAACAAAT
GAGGCTAACTTGGTGGAAAACGGTCTCAATGTTATCAGAATACAGCCAAGTTCATGTGAA
CCTGAAGACTATATAATCCAGTCATACCTATCGTCTTCTTTAACAAAACCTTAAGCTGGT
GTGGCTATGCACACCTTCAATCCCAGCATTGGACGGCAGAGGCAGGCACATCATCTCTGG
GCATCTACTGATTGAGTTCCAGGCTAGCCACAGCTACAAAGTGAGACACTGTCTCAAAAC
CAAACACACAACTAAAAAAGCCTACTATCCAGGAAGTAGGGGTGACTCCCGCTCAGTGGT
AAAGCACTTGCCTAGAATGAGCAAGTCCCTGCCTGGGCTTAATCTTCAGTAATGGAATTA
GAGTGGGGAACCATTTGCCAGTATGAAACCAGCATCATACTGAATTAGAAGTTAAATTAA
TGTCATGTTAAAATTCGGGGGAAAAAAGGGGGGCTGTATAAGACCTAGTGTTTGTCCTGT
GACACAGCAGATACGGCCCAAGAGAACAAAGTGGTGTGCTGGACTAACCAAGAGAAAGAA
CTTGAGCTGGGCTGTGGTGGTGACCCCCATTAGCTCCAGCACTCGGGAGGCAGGGAGGTG
GATCTCTGTAAGTTCAAGGTCAGCCTGGTCTTCAGAGCTAATTCTAGGTCAGCCAGGGCT
ACACGTAGAATCCCTGTCTTGAAAGAAAAAGAAAAAGAGAGGGTGGGGGTAAGAACAATC
TGTGGTTCAGCTTAGAAAGCCAGGGTCCTGCAAGCTGTGCCCAGCTCTCAGAGAAGTCCA
GGCTAATGCATGTCAGGTGGCCTCCACTGTGCAAACTGGT..........

No.	Exon / Intron	Start	End	Start Phase	End Phase	Length	Sequence
	5' upstream sequence						..........CCTTTTTGTTAAAGACATTTTATTATTCTATTTTTTGAAGTTACTTGAGC ATAAGCAGCAGGGTTTTGTCAGTATTGCACATTTTTAAAATAGCCATGGGCCCTATTTTG ATTTAATGTCCCTACCCTTCAACAAAACAACCAAAGAATTCACTACTTACCCATATTTCC CTCTGATGGGGATACAATTTTATCCCTATATTTTCTGCTTGCTCACAGCATTGGAGTATA CGGGCACTCTGGGACCTCATAGCTCTCTGTATGTGCCTTTTCAGTGGTTTCCGTCAACTA GAAACTCAACAAACTCTTACATCTGACAGTTTAAATTCCTGTGACACGTATTGTTGGTGA AACCGCAAATCGGCACAACTTAAGACAATTTGGTACCATTTGTCAAAATAACAATAAAAA CATAGATTTGATCCAATAAACCTGCTTCTGGGAATTTATCCCACGGATTTACCTGCACAC ACAAGAGTGGGTATCTCTCCCTTATCTCAGCCAGAAGCCCCAGTCAATAAAACCCTAGGT TCAGGTTACCCTTTTCAGCCCCTCAGGGCTTCTTTAACCCGAAGGCGTCACTGCTCCTTC TGCCAGGTGCAGGCTCCACTACCGGGTCAATTAAATGCGCTATCAGAGGCTCCATCAGCT CACTCCAGTCCTCACACCTGCAGCCAGGGGCTCGTCACCAGCACTGCCCACTGTGATCGG TTGAGAGCGGCGGCGGACAACCTCTCAACCTCAGCGTTTTTCAAGCCCGCCGACCATGCG GCCCAGCCCCTCGGTTCTATCCCTCCCTTTCCCTCTCTTCCCTCTCTCTCCTTCTCTGAG GGAAAGGGAGCCTGGCTCCTCCAGGGTTCTGTGACACTGCCCTGACCCGGGCGCGCGGCT GCCCCCGAGATAGGCGGGGCTCCGAGCGGGACCGGTCCTCTGGAGGCGGGGCGCGGTGGG GGCGGGGCAATGGAGGGGGCGGGGCCGGCGGGGTACTAACCCCGGTGTCG
1	EXON 1	54,503,779	54,504,004	-	0	226	GCGACGCCTTCGCTGCAGTCGCTTCAGCAGCTGGAACCGGAGTCGGAGTCGCCGGGGCCG CTCGCCGCTCGCGCGTGGCTCCGCCGGGCCCGTAGCCATGGAGGACTTTATCGTGATCTC CGACGACAGTGGCTCCGAGAGCTCGGCCGGGACCCGCTCGGGCAGGGCGCGGAGGCTGCG CCGGGCCCTGTCTCGGACCCCCGGCGCGCTGCCCCGCCGAACCGTG
	INTRON 1 - 2	54,504,005	54,528,303			24,299	GTGAGTGAATCCACTGCCGCTCGCC..........CCTATCTATCTCTTTGTCTCTACAG
2	EXON 2	54,528,304	54,528,536	0	2	233	AGCAAGGGTCAGAAATTAGAACCCATCCCTCATCGAAGACTAAGAATGGTGACAAACACT ATTGAAGAAAACTTCCCTTTGGGGACTGTGCAGTTTTTAATGGACTTTGTTTCACCCCAA CATTACCCACCCAGAGAAATTGTGGCTCACATCGTCCAGAAAATCCTGCTCAGTGGCTCT GAGACTGTGGATGTCCTCAAGGAGGCCTACATGCTTCTCATGAAAATCCAACA
	INTRON 2 - 3	54,528,537	54,529,153			617	GTATGAACCATTACAGTGGGTTGGC..........CTAATTGATGTCACTTGACTTTCAG
3	EXON 3	54,529,154	54,529,223	2	0	70	GCTGCATCCAGCCAATGCCAAGACAGTGGAGTGGGACTGGAAACTGCTCACCTATGTCAT GGAGGAAGAG
	INTRON 3 - 4	54,529,224	54,537,081			7,858	GTAACATAAATTATAAGGACATATC..........TGACTTCTTATTCTTTTTTCCACAG
4	EXON 4	54,537,082	54,537,236	0	2	155	GGACAAACTCTGCCTGGACGAGTTCTCTTTCTACGCTACGTAGTGCAAACCCTGGAAGAT GACTTCCAGCAGATCTTGAGGAGACAGCGGCAGCACCTACAGCAATCCATTGCAAACACT GTTCTGTCATGTGACAAACAGCCTCACAATGTCAG
	INTRON 4 - 5	54,537,237	54,539,703			2,467	GTAATGAGATACTAGAGCTCTGGTA..........CTTTTTTATCTCTTCTTTATTCCAG
5	EXON 5	54,539,704	54,539,856	2	2	153	AGATGTTATTAAGTGGCTGGTCAAAGCAGTGACTGAAAATGAATTAACTCCACCCCAAGA TGAGACTCAGACCTCTCCAAGAACAGGAGTCTTGAAAACTAGCAGTGACCATCTGTCTCC CCGGCCTAACCAGAACAAGAACACCAATCAACT
	INTRON 5 - 6	54,539,857	54,541,423			1,567	GTAAGGAGCAAGCAAAGAATTGTCT..........TGTGTCTCCTGTGTTCTGGATCCAG
6	EXON 6	54,541,424	54,541,552	2	2	129	GATTGTGTGTCAGCTTCAGAGGATGTTGTCCATCGCTGTAGAGGTGGACAGGACTCCAAC CTGCAGCTCCAATAAAATAGCGGAGATGATGTTTGGGTTTGTGCTGGATATCCCTGAGAG GAGCCAGAG
	INTRON 6 - 7	54,541,553	54,546,976			5,424	GTGAGTGTAGTTTGAGCATTTGTTT..........GGGTAACTCCCTCTTGTCCACACAG
7	EXON 7	54,546,977	54,547,133	2	0	157	GGAGATGTTCTTTACTACCATGGAAAGCCACCTTCTGCGATGCAAAGTCCTGGAGATCAT ATTCCTGCACAGCTGTGAGACACCCACCCGTCTCCCCTTGTCTCTGGCCCAGACCCTCTA TTTTCTGAACAACTCCACGTCCCTGCTCAAGTGTCAA
	INTRON 7 - 8	54,547,134	54,547,254			121	GTATGTTCCTTCCTGCTTCAGAACA..........CCCGCTGCTTTTACTGTCTCTGCAG
8	EXON 8	54,547,255	54,547,339	0	1	85	TCAGATAAAACCCAGTGGCAGACATGGGATGAGCTGGTTGAACATCTGCAGTTCCTGCTG TCCAGTTATCAACACGTGCTGAGAG
	INTRON 8 - 9	54,547,340	54,550,382			3,043	GTAAGGAGCACTTGCTCACAGCAAT..........TTGTTTGATTCCTTCCCGCTTGCAG
9	EXON 9	54,550,383	54,551,290	1	-	908	AGCACCTACGGAGCTCAGTGATTGATCGGAAAGACTTAATCATCAAAAGAATTAAGCCCA AGCCCCAACAAGGAGATGACATCACGGTGCTGGATGTGGAGAAGCAGATCGAGGCCTTCC GCAGCCGCCTGGTCCACATATTGGGAGAACCTTTAGTCCCCCAGCTCCAAGACAAAGTGC ATTTGTTGAAGCTGCTGCTCTTCTATGCTGCGGACTTGAACCCCGACACAGAGCCTGCTT CAGAGCACTGAGGCAGCCAGACTTCTAAGCACTGCGCACCAAGAATACCTCCCGACTGCC GCCAGCTACTTAGAAGCCCTGAAGTATGAACAGTAGTTAGGAACATCATAGGACCAAACC TATCTTATTTATCAGTAGGTTGTAATAACTTTGTAACTCTTCAGTATATATTTTTTTTAT AATCTTTATCCTAGCCTATTCAAATTTGGCTTAAATATACAAGGTGTATATATTTTTTAT TAAATTATTTATCTATGCTTTTGAAACAGGCAGTGATATGCACTATATGTCCAACATTTC CATGCAAGATGTGAAAGAACCCTTCTGCACAATCCATCAGTGTTACACTGGTCAAGATAC TGACGGCCCGCTCGGCCCAGCTCTGAAAAAAACATTAGTTTTTCCTGAATAGACCATGTT CTATACTAGACTTTTTATATTGCCCATAAATATGACTCTGTGGCCAGTTTATTAAGTCTA ACAAAGCAGGCAAAGAAACAAGAGCCTGTCAAACCTGTGGTGTTAATAAGATAGAATAAG ATGTTTACAGTGCTTGGGCTCCACTATGGGGCAGGCAGAATGGACAAGACAGACCTGGGC TTGAGAAAGTAGTAAAGATTTTTATTTGTCAATACAAGATAACACAAATAAATTAATTTT TACATCAA
	3' upstream sequence						TCTTAGACTCCAGGGCTTCTCTATGAGGTTAGCTCATTATGTAAATAGCCTACTTACTAT CTAAAGTGATCGAGCAATCATATGTTGAGTGTTCGAGACCAACAGGCTGTGAACAATGAG GAGACACAAAAGGGCACTTCCTTGCCTCCTTTCCTCGGTAAGATGTGTTACTGAACAAAT GAGGCTAACTTGGTGGAAAACGGTCTCAATGTTATCAGAATACAGCCAAGTTCATGTGAA CCTGAAGACTATATAATCCAGTCATACCTATCGTCTTCTTTAACAAAACCTTAAGCTGGT GTGGCTATGCACACCTTCAATCCCAGCATTGGACGGCAGAGGCAGGCACATCATCTCTGG GCATCTACTGATTGAGTTCCAGGCTAGCCACAGCTACAAAGTGAGACACTGTCTCAAAAC CAAACACACAACTAAAAAAGCCTACTATCCAGGAAGTAGGGGTGACTCCCGCTCAGTGGT AAAGCACTTGCCTAGAATGAGCAAGTCCCTGCCTGGGCTTAATCTTCAGTAATGGAATTA GAGTGGGGAACCATTTGCCAGTATGAAACCAGCATCATACTGAATTAGAAGTTAAATTAA TGTCATGTTAAAATTCGGGGGAAAAAAGGGGGGCTGTATAAGACCTAGTGTTTGTCCTGT GACACAGCAGATACGGCCCAAGAGAACAAAGTGGTGTGCTGGACTAACCAAGAGAAAGAA CTTGAGCTGGGCTGTGGTGGTGACCCCCATTAGCTCCAGCACTCGGGAGGCAGGGAGGTG GATCTCTGTAAGTTCAAGGTCAGCCTGGTCTTCAGAGCTAATTCTAGGTCAGCCAGGGCT ACACGTAGAATCCCTGTCTTGAAAGAAAAAGAAAAAGAGAGGGTGGGGGTAAGAACAATC TGTGGTTCAGCTTAGAAAGCCAGGGTCCTGCAAGCTGTGCCCAGCTCTCAGAGAAGTCCA GGCTAATGCATGTCAGGTGGCCTCCACTGTGCAAACTGGT..........

Sequence Detail Report

Gene Symbol (Gene ID)	Simc1 (ENSMUSG00000043183)
Transcript ID	ENSMUST00000118072

		SNP Information
Strain :
Sequence Retrieve :
Exon translate : CDS Start ( 1 ) - End ( 454 ) -
Strand :	forward reverse
Show sequence :	nucleotide amino acid
Color information