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Target CDS Information

Gene Symbol (Gene ID) Susd3 (ENSMUSG00000021384)
Cross Reference
EMBL AK003860, AK006068, AK013276, ...show all
Fantom 1110020G21, 1700017I11, 2810440J20
GO GO:0003674, GO:0005575, GO:0005886, ...show all
goslim_goa GO:0003674, GO:0005575, GO:0005623, ...show all
MGI_trans_name Susd3-003
OTTP OTTMUSP00000034657
OTTT OTTMUST00000068503
protein_id AAH45525.1, BAB23043.1, BAB24394.1, ...show all
UCSC uc007qjb.1
UniParc UPI0000027635
Uniprot/SWISSPROT Q9D176
Vega_transcript OTTMUST00000068503, Susd3-003
Vega_translation 214441, OTTMUSP00000034657
Definition protein_id:ENSMUSP00000113631
translation:
MRRTSATLRGRARPRWRAGNTTPVPVNQTGTCAQLHPPPQGTLQVVRGDGTSLGTVLIFH
CPSGHQMVGSGLLTCAWNGSTVDWSSGSPVCKAVPPHETFGFKVAVIASIVSCAIILLMS
MAFLTCCLLKCVQKNERRRADRYSGLMSFQKLCLAVRLLITSCQVPWGSV

Chromosome 13
Length
Position(start - end)
9430
49238701 - 49248132
Orient to Chromosome minus
Link Location : (13:49238701-49248132)
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Detail Map


 

Report

Polymorphisms Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Susd3 (ENSMUSG00000021384)
Transcript ID ENSMUST00000119721
Reports
substitution
cSNPs3
Insertion9
Deletion16
SNPs
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
Insertions
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
Deletions
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
coding sequence substitutions
premature termination by the nucleotide substitution0
synonymous num2
non-synonymous num1
synonymous substitutions 49238812 (p.Lys134Lys), 49238818 (p.Val132Val),
non-synonymous substitutions 49240515 (p.Val82Ala),
B6 transcript
(ENSMUST00000119721)
MRRTSATLRGRARPRWRAGNTTPVPVNQTGTCAQLHPPPQGTLQVVRGDGTSLGTVLIFH
CPSGHQMVGSGLLTCAWNGSTVDWSSGSPVCKAVPPHETFGFKVAVIASIVSCAIILLMS
MAFLTCCLLKCVQKNERRRADRYSGLMSFQKLCLAVRLLITSCQVPWGSV*
MSMv4 transcript
MRRTSATLRGRARPRWRAGNTTPVPVNQTGTCAQLHPPPQGTLQVVRGDGTSLGTVLIFH
CPSGHQMVGSGLLTCAWNGSTADWSSGSPVCKAVPPHETFGFKVAVIASIVSCAIILLMS
MAFLTCCLLKCVQKNERRRADRYSGLMSFQKLCLAVRLLITSCQVPWGSV*
homology99.42 (171 / 171)

Exon Detail Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Susd3 (ENSMUSG00000021384)
Transcript ID ENSMUST00000119721
No. Exon / Intron Start End Start Phase End Phase Length Sequence
5' upstream sequence
..........TTCCAGCACCCACATGGTGACACACAGCCAACCACTGGCATGCAGAAGGC
ACACATACATGCAGGCCAACCGTTCATGCATAAAAGTAAAATAAATCTAAAGAAAAAAAG
GATGCTCCCTGGAGACTTTGAAGAGCTCTGGCCCCACCTCCTGTATGATGAGACAACGTG
GATCTGTGGTTCTGTGGAGTTCTATCTGTAGTGCTTTGTTCTGTAAGCCTAGGAAACATC
CCCACCCTAAATAACTGTTGGTCAGCGCTGCTGAACATTGGGGGAGGGGGAGGGGGAGGG
GGAGGGGGGAGGGGCGGCACTGAGCCACACGATGGTGGTAGGTGCCTCCCCCCCCCCACG
TCCTTCACAGCTTCTACCCACAAATCAAGGACACTTTAAATCCCTCTAAGTCCCATCCCT
GAGCCTCCAGGCAGCTGCTCTCCACTGGCAGACAGGGATCTCTGGCTATGTGGCCAGGAA
TTCTGATATCTCAGAGTATGGTGGGGGTGGGGTAGGAGAGGGGTTGGTATCACAGTGGGG
TCTGTGGATGGACCTGCCTTTCACGATGCAGCAGACCGGACATAAGCTTGATTTCAACTT
TAGGACATTAAAGAAAGTCACATCACGCGTGACTCGCAAGTTCAAGTGAAAAGGAGACAT
TAGGGGGTGCTACCAACCCTGACTCCAGAAGAGAATGAGGAGGCTGTCACTCTCCAAGGT
CACCTGCCTGGCCCTAGAGTCCAAAGGTGAGTCGGGAGAGGAAGGGTGTGCAGACAGACG
GCTCTAGCTCAAAGGCTTACTTCGAGGCGATCAGCCTGGAGGCTCCCCATTCTCTGCCCC
TCCAGGTGTCCAATCCCACTTCTGCCACCCAGTGCAAGGGGTTGGCGGGACCGGACTAAA
GTTCAACTCTAGCGTCTTGGAGGGCGCGACCTGGGTGTGGCTAGAGACAGCCACGCCTTC
CAACGACCCGCCCCTCAATTAAGTCCCGCCCCCACCTCCGCAAGCTCCAC
1 EXON 1 49248045 49248154 - 1 110
AGAACACTGCGGAGCGCTCAGGATGCGCCGAACGTCTGCGACCCTTCGGGGCCGAGCGAG
GCCGCGGTGGCGTGCTGGGAACACAACGCCTGTCCCAGTGAACCAGACAG
INTRON 1 - 2 49240672 49248044 7373
GTGAGGGCTAGGGCCGCAGTTCTCA..........GCCTCACAGCCTCTTCTCTGTCCAG
2 EXON 2 49240483 49240671 1 1 189
GCACCTGTGCTCAGCTCCATCCCCCGCCTCAAGGCACCTTGCAAGTCGTCCGTGGAGATG
GCACATCTCTGGGGACTGTGCTCATATTCCACTGCCCCTCTGGCCACCAGATGGTGGGGT
CTGGCCTCCTCACTTGTGCCTGGAATGGGAGCACCGCTGACTGGTCTTCAGGAAGCCCTG
TGTGCAAAG
INTRON 2 - 3 49238937 49240482 1546
GTAGGCCCCTCCTCCTTCCTGAGCT..........GAGCTTTGGTTTTTTTCCCTTGCAG
3 EXON 3 49237987 49238936 1 - 950
CTGTGCCACCGCATGAGACCTTCGGCTTTAAGGTGGCAGTGATCGCCTCCATTGTGAGCT
GTGCCATCATCCTGCTCATGTCCATGGCCTTCCTCACCTGCTGCCTCCTCAAGTGTGTAC
AGAAGAATGAGCGGCGGCGTGCTGACAGGTACAGTGGCCTCATGTCCTTCCAGAAGCTGT
GCCTGGCTGTGAGGTTGCTCATCACATCTTGTCAGGTACCCTGGGGCAGCGTCTGAGCGT
CCCACAGCTCCATCTCTCCTCATGCATATGTTGTTCCTGGGATTCTGAGGCATATAGCTG
GGCTGTGAAGGTGTGCGTGAACATACACGAATGCATGCAAGTATGACTGTGGAAGTCACA
GAACAACCTTGGGTGTCCACCAGGAATACTGTCTCCACCTCTTGTCTGCGTGAGACAGTG
CTGGGATTATGCTCACATGGTGTGTCCAGCTTTTTACACGAGTTCTGGGAATTGGAACTC
ATGTTCTCATGTTTCCCCCACTCCACCACGTCCCTGTCCACATACGGGGAACACTTAGTG
GACCTGCATACGCATATGCCAGTCTGTTGTGTTGGTGGCATTTGGAGCTGCCACAGATGG
GTGACCCTACCCATCATGTGAGCATCACTACCCTCGCAGATGTGGACCTAGGATTCCAGA
TGTGCATCCCTGCACCTGTACACCACACATCTGGCAGTAATTGACACCTCTTTCTTATTG
TTTTGTTGTGTTAAAACGCACATATAAATTGACCATGTTATTCACTGTTAAGAGAATTGA
GACAGGTGAGAAGGCTCAGTGGGTAAAAAGGTCCCACTGTCAAGTCTGATGACTCCCATT
CTGTTCCTGGAACCCACACAGTGGAAGGCGAGAACTGACTCCCACAAGTTGTCCTCTGAC
CACCACAGTATCCTGTGATGCACGTGCCCCCCTACCGCAAAATAAAAATG
3' upstream sequence
AAATTAAAAAAATTAAAAACCCGCATTTGCTCTCCAGCACTACAAAAATAAATGAATAAG
CAAACTTTTTTTTTTTTTTTTAAGGAGTGCCATTTGTTCTGTGGCACTCACAGCAAGCAG
AGCTCAGCAGTCAGCTGCTCATGCTAGAACCTTCCACACCTGTCTGCTAAGCTGCTTTTC
ATTGATAGTGACACGCTCTTCCCTGTCCCTGGCTGCTAACATCAGAACAGCACAGGTGTC
CCGTTTTCACGCCTATAGTGTCCTGCTGCCGGTCAGTGGGCCACTGCCACCCAGAGCCAA
GATGGGCTGTGTAGAGGTGTTTCTGCATGTCCACAGCTGTTGGGAGACCCTTCATCCTGA
GCTCTCTCCTCCAGGACGGCACAGCTCTGGTACCAGCTGAGAGGCGAGGACCTGGAGACG
GTACAAGCTGCCTACTTGGGCCTCAAGGGACACAACCACAATAACAGCAGCAGCGTCGGT
GGTGGCAATGGTGGCCCCAGTGGTGGTGGCGGCAAGCCAGGAATTCAGCACAGCCAGGCC
CATGACAACCACAGCTTCACCACGTAGGTTACCCTAGTCCTAAGGTGGGGGTGAGCCAGG
GGTACAGAGGCCCCAGAGACCCTTTTCCAGACCAAGCTCTGCCAGGTCCTGGGACACTGG
CCACCTTACATTCTGGGGACCCTGGTGAACCTACTTCTCCGGTGCCTCAGCTCCCAACCC
CAAAGCTGTTCCAGTACTTTAGCTCTCCCATTTGCCTTATCTAGTTTAAACTCAGTGGGA
TAGGAACTGGCAGAGACCCTGTGCCTCCTACTGTGTTGTCTGCTATGCCAGAGTTACCTC
TCTCTTACCTGCCTCTCCCCCTTCCCTCTCCCCCTCCCCCTCCCCCTCCCTCTCCCTCCC
TCTCCCTCTCTCCCTCCCCATCCCTCTCCCTCTCTCTCCCTCTCTCCCCCTCCCTCCCCC
TCTCCCTCTCTCCTTCTCTCCCTCTCTCCCTCTCTCCCTC..........

Sequence Detail Report

Gene Symbol (Gene ID) Susd3 (ENSMUSG00000021384)
Transcript ID ENSMUST00000119721
SNP Information
Strain :
Sequence Retrieve :
Exon translate :
CDS Start ( 1 ) - End ( 171 )
-
Strand : forward reverse
Show sequence : nucleotide amino acid
Color information