MoG+ -Mouse Genome database with high added value-

Target CDS Information

Gene Symbol (Gene ID)

Pdlim7 (ENSMUSG00000021493)

Cross Reference

EMBL	CT009762
GO	GO:0001725, GO:0001726, GO:0005515, ...show all
goslim_goa	GO:0003674, GO:0005575, GO:0005622, ...show all
MGI_trans_name	Pdlim7-008
OTTP	OTTMUSP00000043946
OTTT	OTTMUST00000082034
UCSC	uc007qrl.3
UniParc	UPI0001889D1B
Uniprot/SPTREMBL	B8JJB2
Vega_transcript	OTTMUST00000082034, Pdlim7-008

Vega_translation

214582, OTTMUSP00000043946

Definition

protein_id:ENSMUSP00000121614
translation:

MDSFKVVLEGPAPWGFRLQGGKDFNVPLSISRLTPGGKAAQAGVAVGDWVLNIDGENAGS
LTHIEAQNKIRACGERLSLGLSRAQPVQSKPQKALTPPADPPRYTFAPSASLNKTARPFG
APPP

Chromosome

Length
Position(start - end)

4,173
55,508,233 - 55,512,407

Orient to Chromosome

minus

Link

Location : (13:55508233-55512407)
/

Detail Map

name	Pdlim7 (ENSMUSG00000021493)
type	gene
link	VEGA Ensembl MGI
xref
definition	locus_tag : Pdlim7 note : PDZ and LIM domain 7 [Source:MGI Symbol;Acc:MGI:1914649]

name	Mir6945 (ENSMUSG00000099096)
type	gene
link	VEGA Ensembl MGI
xref
definition	locus_tag : Mir6945 note : microRNA 6945 [Source:MGI Symbol;Acc:MGI:5531161]

name	Pdlim7 (ENSMUSG00000021493)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000155098

name	Pdlim7 (ENSMUSG00000021493)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000046246

name	Pdlim7 (ENSMUSG00000021493)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000069968

name	Pdlim7 (ENSMUSG00000021493)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000069929

name	Pdlim7 (ENSMUSG00000021493)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000131306

name	Pdlim7 (ENSMUSG00000021493)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000144288

name	Pdlim7 (ENSMUSG00000021493)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000153426

name	Pdlim7 (ENSMUSG00000021493) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	CCDS:CCDS49275.1 Uniprot/SWISSPROT:Q3TJD7 Vega_transcript:OTTMUST00000082030 Vega_transcript:Pdlim7-004 UCSC:uc007qrg.3 Fantom:0710007K04 Fantom:1110003B01 Fantom:2310073F10 Fantom:I530016H17 EMBL:AK003019 EMBL:AK003338 EMBL:AK010141 EMBL:AK167476 EMBL:BC045528 EMBL:BC049565 GO:GO:0001503 GO:GO:0001725 GO:GO:0001726 GO:GO:0005515 GO:GO:0005634 GO:GO:0005737 GO:GO:0005925 GO:GO:0007275 GO:GO:0008270 GO:GO:0015629 GO:GO:0030036 GO:GO:0030154 MGI_trans_name:Pdlim7-004 Vega_translation:214577 Vega_translation:OTTMUSP00000043944 goslim_goa:GO:0003674 goslim_goa:GO:0005575 goslim_goa:GO:0005622 goslim_goa:GO:0005623 goslim_goa:GO:0005634 goslim_goa:GO:0005737 goslim_goa:GO:0005856 goslim_goa:GO:0007010 goslim_goa:GO:0008150 goslim_goa:GO:0030154 goslim_goa:GO:0043167 goslim_goa:GO:0043226 protein_id:AAH45528.1 protein_id:AAH49565.1 protein_id:BAB22725.1 protein_id:BAB26726.1 protein_id:BAC25017.1 protein_id:BAE39558.1 OTTP:OTTMUSP00000043944 OTTT:OTTMUST00000082030 UniParc:UPI000024E58D
definition	note : transcript_id=ENSMUST00000155098 protein_id : ENSMUSP00000120465 translation : MDSFKVVLEGPAPWGFRLQGGKDFNVPLSISRLTPGGKAAQAGVAVGDWVLNIDGENAGSLTHIEAQNKIRACGERLSLGLSRAQPVQSKPQKALTPPADPPRYTFAPSASLNKTARPFGAPPPTDSTLRQNGQLLRQPVPDASKQRLMEDTEDWRPRPGTGQSRSFRILAHLTGTEFMQDPDEEFMKKSSQVPRTEAPAPASTIPQESWPGPTTPSPTSRPPWAVDPAFAERYAPDKTSTVLTRHSQPATPTPLQNRTSIVQAAAGGGTGGGSNNGKTPVCHQCHKIIRGRYLVALGHAYHPEEFVCSQCGKVLEEGGFFEEKGAIFCPSCYDVRYAPNCAKCKKKITGEIMHALKMTWHVHCFTCAACKTPIRNRAFYMEEGAPYCERDYEKMFGTKCRGCDFKIDAGDRFLEALGFSWHDTCFVCAICQINLEGKTFYSKKDKPLCKSHAFSHV

name	Pdlim7 (ENSMUSG00000021493) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	CCDS:CCDS49275.1 Uniprot/SWISSPROT:Q3TJD7 RefSeq_peptide:NP_001107560 RefSeq_mRNA:NM_001114088.2 Vega_transcript:OTTMUST00000082027 Vega_transcript:Pdlim7-001 UCSC:uc007qrg.3 Fantom:0710007K04 Fantom:1110003B01 Fantom:2310073F10 Fantom:I530016H17 EMBL:AK003019 EMBL:AK003338 EMBL:AK010141 EMBL:AK167476 EMBL:BC045528 EMBL:BC049565 GO:GO:0001503 GO:GO:0001725 GO:GO:0001726 GO:GO:0005515 GO:GO:0005515 GO:GO:0005634 GO:GO:0005634 GO:GO:0005737 GO:GO:0005925 GO:GO:0005925 GO:GO:0007275 GO:GO:0008270 GO:GO:0015629 GO:GO:0015629 GO:GO:0030036 GO:GO:0030154 GO:GO:0045669 MGI_trans_name:Pdlim7-001 Vega_translation:214578 Vega_translation:OTTMUSP00000043941 goslim_goa:GO:0003674 goslim_goa:GO:0005575 goslim_goa:GO:0005622 goslim_goa:GO:0005623 goslim_goa:GO:0005634 goslim_goa:GO:0005737 goslim_goa:GO:0005856 goslim_goa:GO:0007010 goslim_goa:GO:0008150 goslim_goa:GO:0030154 goslim_goa:GO:0043167 goslim_goa:GO:0043226 protein_id:AAH45528.1 protein_id:AAH49565.1 protein_id:BAB22725.1 protein_id:BAB26726.1 protein_id:BAC25017.1 protein_id:BAE39558.1 OTTP:OTTMUSP00000043941 OTTT:OTTMUST00000082027 UniParc:UPI000024E58D
definition	note : transcript_id=ENSMUST00000046246 protein_id : ENSMUSP00000047173 translation : MDSFKVVLEGPAPWGFRLQGGKDFNVPLSISRLTPGGKAAQAGVAVGDWVLNIDGENAGSLTHIEAQNKIRACGERLSLGLSRAQPVQSKPQKALTPPADPPRYTFAPSASLNKTARPFGAPPPTDSTLRQNGQLLRQPVPDASKQRLMEDTEDWRPRPGTGQSRSFRILAHLTGTEFMQDPDEEFMKKSSQVPRTEAPAPASTIPQESWPGPTTPSPTSRPPWAVDPAFAERYAPDKTSTVLTRHSQPATPTPLQNRTSIVQAAAGGGTGGGSNNGKTPVCHQCHKIIRGRYLVALGHAYHPEEFVCSQCGKVLEEGGFFEEKGAIFCPSCYDVRYAPNCAKCKKKITGEIMHALKMTWHVHCFTCAACKTPIRNRAFYMEEGAPYCERDYEKMFGTKCRGCDFKIDAGDRFLEALGFSWHDTCFVCAICQINLEGKTFYSKKDKPLCKSHAFSHV

name	Pdlim7 (ENSMUSG00000021493) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	CCDS:CCDS49276.1 RefSeq_peptide:NP_001107559 RefSeq_mRNA:NM_001114087.2 Vega_transcript:OTTMUST00000082028 Vega_transcript:Pdlim7-002 Uniprot/SPTREMBL:Q8BVJ7 UCSC:uc007qrk.3 Fantom:6230400I01 EMBL:AK077998 EMBL:BC052698 EMBL:CH466546 EMBL:CT009762 GO:GO:0001725 GO:GO:0001726 GO:GO:0005515 GO:GO:0005634 GO:GO:0005737 GO:GO:0005925 GO:GO:0015629 GO:GO:0030036 MGI_trans_name:Pdlim7-002 Vega_translation:214579 Vega_translation:OTTMUSP00000043942 goslim_goa:GO:0003674 goslim_goa:GO:0005575 goslim_goa:GO:0005622 goslim_goa:GO:0005623 goslim_goa:GO:0005634 goslim_goa:GO:0005737 goslim_goa:GO:0005856 goslim_goa:GO:0007010 goslim_goa:GO:0008150 goslim_goa:GO:0043226 protein_id:AAH52698.1 protein_id:BAC37095.1 protein_id:EDL41207.1 OTTP:OTTMUSP00000043942 OTTT:OTTMUST00000082028 UniParc:UPI00000EA8E0
definition	note : transcript_id=ENSMUST00000069968 protein_id : ENSMUSP00000070153 translation : MDSFKVVLEGPAPWGFRLQGGKDFNVPLSISRLTPGGKAAQAGVAVGDWVLNIDGENAGSLTHIEAQNKIRACGERLSLGLSRAQPVQSKPQKALTPPADPPRYTFAPSASLNKTARPFGAPPPTDSTLRQNGQLLRQPVPDASKQRLMEDTEDWRPRPGTGQSRSFRILAHLTGTEFMQDPDEEFMKKSREKYVLELQSPRYTRLRDWHHQRSAHVLNVQS

name	Pdlim7 (ENSMUSG00000021493) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	CCDS:CCDS26547.1 Uniprot/SWISSPROT:Q3TJD7 RefSeq_peptide:NP_080407 RefSeq_mRNA:NM_026131.4 Vega_transcript:OTTMUST00000082029 Vega_transcript:Pdlim7-003 UCSC:uc007qri.3 Fantom:0710007K04 Fantom:1110003B01 Fantom:2310073F10 Fantom:I530016H17 EMBL:AK003019 EMBL:AK003338 EMBL:AK010141 EMBL:AK167476 EMBL:BC045528 EMBL:BC049565 GO:GO:0001503 GO:GO:0001725 GO:GO:0001726 GO:GO:0005515 GO:GO:0005634 GO:GO:0005737 GO:GO:0005925 GO:GO:0007275 GO:GO:0008270 GO:GO:0015629 GO:GO:0030036 GO:GO:0030154 MGI_trans_name:Pdlim7-003 Vega_translation:214580 Vega_translation:OTTMUSP00000043943 goslim_goa:GO:0003674 goslim_goa:GO:0005575 goslim_goa:GO:0005622 goslim_goa:GO:0005623 goslim_goa:GO:0005634 goslim_goa:GO:0005737 goslim_goa:GO:0005856 goslim_goa:GO:0007010 goslim_goa:GO:0008150 goslim_goa:GO:0030154 goslim_goa:GO:0043167 goslim_goa:GO:0043226 protein_id:AAH45528.1 protein_id:AAH49565.1 protein_id:BAB22725.1 protein_id:BAB26726.1 protein_id:BAC25017.1 protein_id:BAE39558.1 OTTP:OTTMUSP00000043943 OTTT:OTTMUST00000082029 UniParc:UPI00000E72B2
definition	note : transcript_id=ENSMUST00000069929 protein_id : ENSMUSP00000064219 translation : MDSFKVVLEGPAPWGFRLQGGKDFNVPLSISRLTPGGKAAQAGVAVGDWVLNIDGENAGSLTHIEAQNKIRACGERLSLGLSRAQPVQSKPQKVQTSDKQLLRQPVPDASKQRLMEDTEDWRPRPGTGQSRSFRILAHLTGTEFMQDPDEEFMKKSREKYVLELQSPRYTRLRDWHHQRSAHVLNVQS

name	Pdlim7 (ENSMUSG00000021493) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000082033 Vega_transcript:Pdlim7-007 Uniprot/SPTREMBL:B8JJB3 UCSC:uc007qrl.3 EMBL:CH466546 EMBL:CT009762 GO:GO:0001725 GO:GO:0001726 GO:GO:0005515 GO:GO:0005634 GO:GO:0005737 GO:GO:0005925 GO:GO:0015629 GO:GO:0030036 MGI_trans_name:Pdlim7-007 Vega_translation:214581 Vega_translation:OTTMUSP00000043945 goslim_goa:GO:0003674 goslim_goa:GO:0005575 goslim_goa:GO:0005622 goslim_goa:GO:0005623 goslim_goa:GO:0005634 goslim_goa:GO:0005737 goslim_goa:GO:0005856 goslim_goa:GO:0007010 goslim_goa:GO:0008150 goslim_goa:GO:0043226 protein_id:EDL41208.1 OTTP:OTTMUSP00000043945 OTTT:OTTMUST00000082033 UniParc:UPI000154ABCE
definition	note : transcript_id=ENSMUST00000131306 protein_id : ENSMUSP00000119753 translation : MDSFKVVLEGPAPWGFRLQGGKDFNVPLSISRLTPGGKAAQAGVAVGDWVLNIDGENAGSLTHIEAQNKIRACGERLSLGLSRAQPVQSKPQKALTPPADPPRYTFAPSASLNKTARPFGAPPPTDSTLRQNGYVSPCPSTPTSAHCLVLSQAHTQAACYRSVCAGPQPLNRVAATPGGRVGLLLFHRLCPAEQPGVSLCCGPAESHKLVATSPPSPPL

name	Pdlim7 (ENSMUSG00000021493) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000082034 Vega_transcript:Pdlim7-008 Uniprot/SPTREMBL:B8JJB2 UCSC:uc007qrl.3 EMBL:CT009762 GO:GO:0001725 GO:GO:0001726 GO:GO:0005515 GO:GO:0005634 GO:GO:0005737 GO:GO:0005925 GO:GO:0015629 GO:GO:0030036 MGI_trans_name:Pdlim7-008 Vega_translation:214582 Vega_translation:OTTMUSP00000043946 goslim_goa:GO:0003674 goslim_goa:GO:0005575 goslim_goa:GO:0005622 goslim_goa:GO:0005623 goslim_goa:GO:0005634 goslim_goa:GO:0005737 goslim_goa:GO:0005856 goslim_goa:GO:0007010 goslim_goa:GO:0008150 goslim_goa:GO:0043226 OTTP:OTTMUSP00000043946 OTTT:OTTMUST00000082034 UniParc:UPI0001889D1B
definition	note : transcript_id=ENSMUST00000144288 protein_id : ENSMUSP00000121614 translation : MDSFKVVLEGPAPWGFRLQGGKDFNVPLSISRLTPGGKAAQAGVAVGDWVLNIDGENAGSLTHIEAQNKIRACGERLSLGLSRAQPVQSKPQKALTPPADPPRYTFAPSASLNKTARPFGAPPP

name	Pdlim7 (ENSMUSG00000021493) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000082035 Vega_transcript:Pdlim7-009 Uniprot/SPTREMBL:B8JJB1 EMBL:CT009762 GO:GO:0001725 GO:GO:0001726 GO:GO:0005515 GO:GO:0005634 GO:GO:0005737 GO:GO:0005925 GO:GO:0015629 GO:GO:0030036 MGI_trans_name:Pdlim7-009 Vega_translation:214583 Vega_translation:OTTMUSP00000043947 goslim_goa:GO:0003674 goslim_goa:GO:0005575 goslim_goa:GO:0005622 goslim_goa:GO:0005623 goslim_goa:GO:0005634 goslim_goa:GO:0005737 goslim_goa:GO:0005856 goslim_goa:GO:0007010 goslim_goa:GO:0008150 goslim_goa:GO:0043226 OTTP:OTTMUSP00000043947 OTTT:OTTMUST00000082035 UniParc:UPI0001889D1C
definition	note : transcript_id=ENSMUST00000153426 protein_id : ENSMUSP00000118867 translation : MDSFKVVLEGPAPWGFRLQGGKDFNVPLSISRLTPGGKAAQAGVAVGDWVLNIDGENA

name
type	STS
link
xref	UniSTS_NUM:164527 UniSTS:AV007930 WI_MRC-RH:512529
definition	note : map_weight=1 standard_name : AV007930

name
type	misc_feature
link
xref
definition	note : contig CT009762.8 1..175032(-1)

name	Pdlim7 (ENSMUSG00000021493)
type	misc_RNA
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000082032 Vega_transcript:OTTMUST00000082032 UCSC:uc007qrf.3 MGI_trans_name:Pdlim7-006 OTTT:OTTMUST00000082032
definition	note : retained_intron note : transcript_id=ENSMUST00000153230

name	Pdlim7 (ENSMUSG00000021493)
type	misc_RNA
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000082031 Vega_transcript:OTTMUST00000082031 UCSC:uc007qrf.3 MGI_trans_name:Pdlim7-005 OTTT:OTTMUST00000082031
definition	note : retained_intron note : transcript_id=ENSMUST00000128910

name	Pdlim7 (ENSMUSG00000021493)
type	misc_RNA
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000082037 Vega_transcript:OTTMUST00000082037 MGI_trans_name:Pdlim7-011 OTTT:OTTMUST00000082037
definition	note : retained_intron note : transcript_id=ENSMUST00000128911

name	Pdlim7 (ENSMUSG00000021493)
type	misc_RNA
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000082036 Vega_transcript:OTTMUST00000082036 MGI_trans_name:Pdlim7-010 OTTT:OTTMUST00000082036
definition	note : retained_intron note : transcript_id=ENSMUST00000136583

name	Mir6945 (ENSMUSG00000099096)
type	misc_RNA
link	VEGA Ensembl MGI
xref	RefSeq_ncRNA:NR_105910 UCSC:uc033glz.1 MGI_trans_name:Mir6945-201 RNACentral:URS000075CD8D
definition	note : miRNA note : transcript_id=ENSMUST00000184300

Polymorphisms
Exon
Sequence

Polymorphisms Report

Target Strain	MSMv4 JF1v3 KJRv1 SWNv1 CHDv1 NJLv1 BLG2v1 HMIv1 BFMv1 PGN2v1

Gene Symbol (Gene ID)	Pdlim7 (ENSMUSG00000021493)
Transcript ID	ENSMUST00000144288

Reports
substitution
cSNPs	1
Insertion	8
Deletion	15
SNPs	+1kb 55513722(c.-1315T>C), 55513790(c.-1383T>C), 55513791(c.-1384C>T), 55514196(c.-1789C>T), 55514464(c.-2057C>T), 55514476(c.-2069G>A), 55514692(c.-2285C>A), 55514748(c.-2341G>T), 55514821(c.-2414G>A), 55514998(c.-2591C>A), 55515091(c.-2684C>T), 55515206(c.-2799G>A), 55515440(c.-3033G>A), 55515731(c.-3324C>T), 55515910(c.-3503G>A), 55516075(c.-3668G>A), 55516097(c.-3690C>A), 55517176(c.-4769A>G), 55517425(c.-5018G>C), 55517440(c.-5033G>C), 55517595(c.-5188T>C), 55517661(c.-5254G>C), 55517771(c.-5364A>G), 55517964(c.-5557A>C), 55518014(c.-5607C>A), 55518099(c.-5692A>T), 55518108(c.-5701C>T), 55518137(c.-5730C>T), 55518218(c.-5811T>C), 5'UTR CDS 55509035(c.105C>T), 3'UTR INTRON 55508374(c.280-48T>C), 55508831(c.249-21T>C), 55509053(c.97-10T>C), 55509077(c.97-34G>T), 55509250(c.97-207A>T), 55509368(c.97-325C>T), 55509915(c.97-872G>C), 55509962(c.97-919A>T), 55509966(c.97-923A>G), 55510002(c.97-959C>T), 55510012(c.97-969T>C), 55510058(c.97-1015C>T), 55510171(c.97-1128C>A), 55510297(c.97-1254G>C), 55510300(c.97-1257C>A), 55510338(c.97-1295C>T), 55510391(c.97-1348G>C), 55510417(c.97-1374T>G), 55510633(c.97-1590G>A), 55510937(c.96+1375G>A), 55510946(c.96+1366T>C), 55510970(c.96+1342C>G), 55510993(c.96+1319C>G), 55511248(c.96+1064A>T), 55511502(c.96+810C>A), 55511534(c.96+778T>C), 55511606(c.96+706G>T), 55511655(c.96+657A>G), 55511673(c.96+639A>G), 55511929(c.96+383C>T), 55512015(c.96+297A>G), 55512581(c.-11-163G>C), 55512632(c.-11-214G>A), 55513251(c.-12+353T>C), 55513409(c.-12+195T>G), 55513437(c.-12+167G>C), -1kb 55503233(c.5000C>T), 55503287(c.4946G>A), 55503298(c.4935T>C), 55503301(c.4932T>G), 55503360(c.4873T>G), 55503454(c.4779G>T), 55503522(c.4711G>A), 55503645(c.4588G>A), 55503666(c.4567T>G), 55503901(c.4332T>A), 55503913(c.4320T>C), 55503918(c.4315A>T), 55503928(c.4305T>C), 55504008(c.4225C>A), 55504745(c.3488C>T), 55504906(c.3327A>C), 55504913(c.3320C>T), 55505054(c.3179T>C), 55505139(c.3094G>T), 55505207(c.3026G>T), 55505474(c.2759G>C), 55505540(c.2693C>G), 55505742(c.2491C>T), 55506426(c.1807G>A), 55506442(c.1791G>A), 55506683(c.1550T>C), 55506866(c.1367A>G), 55506963(c.1270C>T), 55507320(c.913T>C), 55507706(c.527G>T), 55507780(c.453T>C), 55507952(c.281A>G), 55507968(c.265C>T), 55507978(c.255G>C), 55507980(c.253T>A), 55508154(c.79C>T),
Insertions	+1kb 55514300 (c.-1894_-1893insGG), 55514584 (c.-2178_-2177insGAGAGAG), 5'UTR CDS 3'UTR INTRON 55509689 (c.97-647_97-646insCGCT), 55510373 (c.97-1331_97-1330insCTT), 55511724 (c.96+587_96+588insGT), -1kb 55506559 (c.1672_1673dupCA), 55507138 (c.1093_1094dupCT), 55508172 (c.59_60dupTG),
Deletions	+1kb 55514496 (c.-2094_-2090delGGTTT), 55514729 (c.-2329_-2323delGTGGGAA), 55515462 (c.-3057_-3056delGT), 55516513 (c.-4107delA), 55517308 (c.-4903_-4902delCA), 55518366 (c.-5960delT), 55518401 (c.-5996_-5995delGG), 5'UTR CDS 3'UTR INTRON 55508525 (c.280-200delC), 55511810 (c.96+501delG), 55511813 (c.96+498delG), -1kb 55503808 (c.4424delT), 55505137 (c.3095delA), 55505753 (c.2478_2479delGT), 55507981 (c.250_251delAA), 55508146 (c.85_86delCA),
coding sequence substitutions
premature termination by the nucleotide substitution	0
synonymous num	1
non-synonymous num	0
synonymous substitutions	55509035 (p.Pro35Pro),
non-synonymous substitutions
B6 transcript (ENSMUST00000144288)	MDSFKVVLEGPAPWGFRLQGGKDFNVPLSISRLTPGGKAAQAGVAVGDWVLNIDGENAGS LTHIEAQNKIRACGERLSLGLSRAQPVQSKPQKALTPPADPPRYTFAPSASLNKTARPFG APPP
MSMv4 transcript	MDSFKVVLEGPAPWGFRLQGGKDFNVPLSISRLTPGGKAAQAGVAVGDWVLNIDGENAGS LTHIEAQNKIRACGERLSLGLSRAQPVQSKPQKALTPPADPPRYTFAPSASLNKTARPFG APPP
homology	100.00 (124 / 124)

Exon Detail Report

Target Strain	MSMv4 JF1v3 KJRv1 SWNv1 CHDv1 NJLv1 BLG2v1 HMIv1 BFMv1 PGN2v1

Gene Symbol (Gene ID)	Pdlim7 (ENSMUSG00000021493)
Transcript ID	ENSMUST00000144288


..........TGTAGACCAGCATTCCTGTCAGAACAGGATGAAACCTGAAGGCTGCAGCT
GACTTAATTGAGGTCATAGAAGACCTGGAGAAAGAGTCAATAGTATAGGGGACGAGGGAC
AAAGAGGGAAACGTGATGGAGACAGAAGCATAGCAGATAGCTAAAGAGGGTGGTTTTGTT
TTTTTGGTTTTTTTTTTTCTTCAGTTTTTCAAGACACGGTTTTTCTGTGTAGCCTTGGCT
GTCCTGGAACTCACTACATAGATCAGTCAGTCTGGCCTTGAACTCAGAGACCCACCTGAA
GAGGATTTCTTCAAGGATGACAACTCCCATAAGAATTTATGTACTTGGGACAATGATGGG
GAAGAGGGGGTGTGATGATGGGGGGGCTGGGCAAGGGGAGGCTGTGCACCTCTCTACTGA
CTCAAACATTCAGGAGAGCTCAGCTTTTCCTTCTGCCCACCCTTGGCTAAGACCGAGGCT
AAAGCAGGGGTTCTGAGAACACTCCGTGGCAGCCCCTTCCATCCCAACCGCATTGGAAGA
ACTGTGTACTCTGGACTGGGGTTAAATGGGAAACAATCCATTCCAATAGTGGTTCTGGGG
GCTCTGGGTGGAAGTCCCATGGCTGTGGACTCTACTTACACCGTCAGACAACAAGTGGCG
CTAAGCCCGCCCCCGTTGGCTCTTACTATGTATGTATTTACTTGTTTGTTATATCCTGCA
AGCCTTTGGTTGGGTTTGGTGTTGAGGACTGAAACAAGGGCCTCCAGAGAGCTTAGCTAC
TGAGCTCCACCACTAAGCTACATCCCGAACACCAGGAAGCCTAACTTGAAACTACCCTAT
CTCGCTTCTCCAGTTCCTAGAGAATCTGAAATCTGATGATGCTGACAATATTGACTCCTA
ACAGTATCCCTAACAGAAAAGTGTTACCATGCCATTTTCCTCTACAAGAGAATACGGTGA
GAGACCAATCAACTCTGGGGTTTCAAACGGATGCTTTCCTCCACTCCGCC
AGTGGGAGGCGCAAGGGGCTTGGGCGAGAGCCTGAAGCGGGGCACAGGCTGGGCAGCGACCCGACTGGCGAGG
GTAAGTGCCCGATCTCACCTTCCCT..........AGACACTTTCTCTTCTTCCTCACAG
GAGCAGGCACGATGGATTCCTTCAAGGTGGTGCTGGAAGGGCCAGCCCCTTGGGGCTTCCGTCTGCAAGGGGGCAAGGACTTCAATGTGCCCCTCTCTATCTCTCGG
GTGAGCCTAGGTGGGGGAACAAACT..........GACCTCTGACCATTCCTCTCTACAG
CTCACGCCTGGAGGCAAAGCTGCACAGGCCGGTGTGGCTGTGGGAGACTGGGTACTGAATATTGACGGTGAGAACGCGGGCAGCCTCACGCACATCGAAGCCCAGAACAAGATCCGCGCCTGTGGGGAGCGCCTCAGCCTGGGTCTTAGCAG
GTACAGGTGCTGACAGGCAGAAGGG..........TGACCGCGTCTCTCTTCTTCTCCAG
AGCCCAGCCTGTTCAGAGCAAACCACAGAAG
GTAGGTTATACAGGAGATGTCCTGG..........CCTGCCCGGCTCTGTCTCTGCCCAG
GCCCTGACCCCTCCCGCCGACCCCCCGAGGTACACTTTTGCACCAAGCGCCTCCCTCAACAAGACGGCCCGGCCCTTCGGGGCACCCCCACCTA
CTGACAGCACCCTGCGGCAGAATGGGTATGTCAGCCCCTGCCCATCCACTCCAACCTCTG
CACACTGTCTGGTCCTTTCACAAGCACACACACAAGCTGCCTGCTACCGCTCAGTCTGTG
CCGGACCCCAGCCCCTTAACCGTGTGGCAGCAACCCCTGGCGGCCGGGTGGGGCTACTGC
TCTTCCACAGGCTCTGCCCTGCTGAGCAGCCTGGGGTTAGCCTGTGCTGTGGGCCAGCTG
AGTCTCACAAACTCGTTGCTACCTTGCCTCCCTCTCCACCGCTCTGATTCCCCCTGTCAT
TCTTCTCCTGTGTCTGTCCCTTTATCTGTCTATCTGTCTGTTTCCTTCACAGGTGCAGAC
CTCTGACAAGTTAGTGAGCCCTCTCTTCCTGTCACTTTCCTCCCTTTTGGCACTCTGGGT
GGTGGCCCCTCCCTGTCCTGCCTGTCCTGACCCCCTCTGATTTACCCACCTACCCAGCCA
AACCCTTTGCCTCACCCTCCTACCCCCCAACCCCCTGCTGTCACCATAACCCGTGCACAT
CACGTCCTGGGAGGGGCAGCCCCTGGTGCCCACAGAACCAGAGGTTCTGAGCTCTGCCCT
TCCCATAGACAGTTGCTCAGACAGCCGGTCCCCGATGCCAGCAAGCAGCGGCTGATGGAG
GATACCGAAGACTGGCGGCCGCGGCCGGGGACAGGCCAGTCCCGCTCCTTCCGCATCCTT
GCCCACCTCACGGGCACAGAGTTCAGTAAGTGCTGGCCCAGGACAGGGCAGACTCTCCTG
ACCTCAGCCTGGGCCTGACTTTGCCAGGACTCATGGCTGGGGTGGCCCTTGTTTCTCTTG
GTCAATGCCTGCCTCTGTCCTCTCAGTGCAAGACCCGGATGAGGAATTCATGAAGAAGTC
AAGGTAAAAGCTCGGGCGCTAACCCCTCTCCCTAACCTCCCACTTCTTCCTTTCCAGCCA
CCAGCCCTCGGCTGCTCCTGGCCATCCCCTGCCAGAGCTC..........

No.	Exon / Intron	Start	End	Start Phase	End Phase	Length	Sequence
	5' upstream sequence						..........TGTAGACCAGCATTCCTGTCAGAACAGGATGAAACCTGAAGGCTGCAGCT GACTTAATTGAGGTCATAGAAGACCTGGAGAAAGAGTCAATAGTATAGGGGACGAGGGAC AAAGAGGGAAACGTGATGGAGACAGAAGCATAGCAGATAGCTAAAGAGGGTGGTTTTGTT TTTTTGGTTTTTTTTTTTCTTCAGTTTTTCAAGACACGGTTTTTCTGTGTAGCCTTGGCT GTCCTGGAACTCACTACATAGATCAGTCAGTCTGGCCTTGAACTCAGAGACCCACCTGAA GAGGATTTCTTCAAGGATGACAACTCCCATAAGAATTTATGTACTTGGGACAATGATGGG GAAGAGGGGGTGTGATGATGGGGGGGCTGGGCAAGGGGAGGCTGTGCACCTCTCTACTGA CTCAAACATTCAGGAGAGCTCAGCTTTTCCTTCTGCCCACCCTTGGCTAAGACCGAGGCT AAAGCAGGGGTTCTGAGAACACTCCGTGGCAGCCCCTTCCATCCCAACCGCATTGGAAGA ACTGTGTACTCTGGACTGGGGTTAAATGGGAAACAATCCATTCCAATAGTGGTTCTGGGG GCTCTGGGTGGAAGTCCCATGGCTGTGGACTCTACTTACACCGTCAGACAACAAGTGGCG CTAAGCCCGCCCCCGTTGGCTCTTACTATGTATGTATTTACTTGTTTGTTATATCCTGCA AGCCTTTGGTTGGGTTTGGTGTTGAGGACTGAAACAAGGGCCTCCAGAGAGCTTAGCTAC TGAGCTCCACCACTAAGCTACATCCCGAACACCAGGAAGCCTAACTTGAAACTACCCTAT CTCGCTTCTCCAGTTCCTAGAGAATCTGAAATCTGATGATGCTGACAATATTGACTCCTA ACAGTATCCCTAACAGAAAAGTGTTACCATGCCATTTTCCTCTACAAGAGAATACGGTGA GAGACCAATCAACTCTGGGGTTTCAAACGGATGCTTTCCTCCACTCCGCC
1	EXON 1	55,513,604	55,513,676	-	-	73	AGTGGGAGGCGCAAGGGGCTTGGGCGAGAGCCTGAAGCGGGGCACAGGCTGGGCAGCGAC CCGACTGGCGAGG
	INTRON 1 - 2	55,512,419	55,513,603			1,185	GTAAGTGCCCGATCTCACCTTCCCT..........AGACACTTTCTCTTCTTCCTCACAG
2	EXON 2	55,512,312	55,512,418	-	0	107	GAGCAGGCACGATGGATTCCTTCAAGGTGGTGCTGGAAGGGCCAGCCCCTTGGGGCTTCC GTCTGCAAGGGGGCAAGGACTTCAATGTGCCCCTCTCTATCTCTCGG
	INTRON 2 - 3	55,509,044	55,512,311			3,268	GTGAGCCTAGGTGGGGGAACAAACT..........GACCTCTGACCATTCCTCTCTACAG
3	EXON 3	55,508,892	55,509,043	0	2	152	CTCACGCCTGGAGGCAAAGCTGCACAGGCCGGTGTGGCTGTGGGAGACTGGGTACTGAAT ATTGACGGTGAGAACGCGGGCAGCCTCACGCACATCGAAGCCCAGAACAAGATCCGCGCC TGTGGGGAGCGCCTCAGCCTGGGTCTTAGCAG
	INTRON 3 - 4	55,508,811	55,508,891			81	GTACAGGTGCTGACAGGCAGAAGGG..........TGACCGCGTCTCTCTTCTTCTCCAG
4	EXON 4	55,508,780	55,508,810	2	0	31	AGCCCAGCCTGTTCAGAGCAAACCACAGAAG
	INTRON 4 - 5	55,508,327	55,508,779			453	GTAGGTTATACAGGAGATGTCCTGG..........CCTGCCCGGCTCTGTCTCTGCCCAG
5	EXON 5	55,508,233	55,508,326	0	-	94	GCCCTGACCCCTCCCGCCGACCCCCCGAGGTACACTTTTGCACCAAGCGCCTCCCTCAAC AAGACGGCCCGGCCCTTCGGGGCACCCCCACCTA
	3' upstream sequence						CTGACAGCACCCTGCGGCAGAATGGGTATGTCAGCCCCTGCCCATCCACTCCAACCTCTG CACACTGTCTGGTCCTTTCACAAGCACACACACAAGCTGCCTGCTACCGCTCAGTCTGTG CCGGACCCCAGCCCCTTAACCGTGTGGCAGCAACCCCTGGCGGCCGGGTGGGGCTACTGC TCTTCCACAGGCTCTGCCCTGCTGAGCAGCCTGGGGTTAGCCTGTGCTGTGGGCCAGCTG AGTCTCACAAACTCGTTGCTACCTTGCCTCCCTCTCCACCGCTCTGATTCCCCCTGTCAT TCTTCTCCTGTGTCTGTCCCTTTATCTGTCTATCTGTCTGTTTCCTTCACAGGTGCAGAC CTCTGACAAGTTAGTGAGCCCTCTCTTCCTGTCACTTTCCTCCCTTTTGGCACTCTGGGT GGTGGCCCCTCCCTGTCCTGCCTGTCCTGACCCCCTCTGATTTACCCACCTACCCAGCCA AACCCTTTGCCTCACCCTCCTACCCCCCAACCCCCTGCTGTCACCATAACCCGTGCACAT CACGTCCTGGGAGGGGCAGCCCCTGGTGCCCACAGAACCAGAGGTTCTGAGCTCTGCCCT TCCCATAGACAGTTGCTCAGACAGCCGGTCCCCGATGCCAGCAAGCAGCGGCTGATGGAG GATACCGAAGACTGGCGGCCGCGGCCGGGGACAGGCCAGTCCCGCTCCTTCCGCATCCTT GCCCACCTCACGGGCACAGAGTTCAGTAAGTGCTGGCCCAGGACAGGGCAGACTCTCCTG ACCTCAGCCTGGGCCTGACTTTGCCAGGACTCATGGCTGGGGTGGCCCTTGTTTCTCTTG GTCAATGCCTGCCTCTGTCCTCTCAGTGCAAGACCCGGATGAGGAATTCATGAAGAAGTC AAGGTAAAAGCTCGGGCGCTAACCCCTCTCCCTAACCTCCCACTTCTTCCTTTCCAGCCA CCAGCCCTCGGCTGCTCCTGGCCATCCCCTGCCAGAGCTC..........

Sequence Detail Report

Gene Symbol (Gene ID)	Pdlim7 (ENSMUSG00000021493)
Transcript ID	ENSMUST00000144288

		SNP Information
Strain :
Sequence Retrieve :
Exon translate : CDS Start ( 1 ) - End ( 124 ) -
Strand :	forward reverse
Show sequence :	nucleotide amino acid
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