MoG+ -Mouse Genome database with high added value-

Target CDS Information

Gene Symbol (Gene ID)

Emid1 (ENSMUSG00000034164)

Cross Reference

EMBL	AJ416093
GO	GO:0005515, GO:0005578, GO:0005581, ...show all
goslim_goa	GO:0003674, GO:0005575, GO:0005576, ...show all
MGI_trans_name	Emid1-201
protein_id	CAC94780.1
UCSC	uc007hwg.1
UniParc	UPI00001D6A1B
Uniprot/SWISSPROT	Q91VF5

Definition

protein_id:ENSMUSP00000131391
translation:

MGGPRAWTLLCLGLLLPGGGAAWSVPGARFSGRRNWCSYVVTRTVSCHVQNGTYLQRVLQ
NCPWPMGCPGNRTVVRPLYKVTYKTVTAREWRCCPGHSGVTCEEGSPGLLEPTWTDSGMR
RMAVRPTALSGCLNCSKVSELTERLKALEAKVAVLSVTEQTVPSVPATPEDSALLWGSPA
ARGSPGDGSLQDRLDSWGLPGPTGPKGGTDSQSPVRIRGPPGPQGPPGRPGQTGAAGTPG
KMGPPGPPGPPGPPGPPAPVGPPYGQVSLHGDPLLSNTFTEMGSHWPQGPTGPPGPPGPP
GPMGPPGLPGPMGAPGSPGHMGIPGPSGPKGTSGHPGEKGERGLPGEPGPQGLMGVPGEP
GPKGDPGEKSHWGEGLHQLREALKILAERVLILETMIGLYEPDLGSGAGPDGTGTPSLLR
GKRGGHPTNYPIITPRRRSERS

Chromosome

Length
Position(start - end)

45379
5106842 - 5152222

Orient to Chromosome

minus

Link

Location : (11:5106842-5152222)
/

Detail Map

name	Rhbdd3 (ENSMUSG00000034175)
type	gene
link	VEGA Ensembl MGI
xref
definition	locus_tag : Rhbdd3 note : rhomboid domain containing 3 [Source:MGI Symbol;Acc:MGI:2444684]

name	Emid1 (ENSMUSG00000034164)
type	gene
link	VEGA Ensembl MGI
xref
definition	locus_tag : Emid1 note : EMI domain containing 1 [Source:MGI Symbol;Acc:MGI:2155091]

name	Rhbdd3 (ENSMUSG00000034175)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000101610

name	Rhbdd3 (ENSMUSG00000034175)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000036320

name	Rhbdd3 (ENSMUSG00000034175)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000109878

name	Rhbdd3 (ENSMUSG00000034175)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000148761

name	Emid1 (ENSMUSG00000034164)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000062821

name	Emid1 (ENSMUSG00000034164)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000132328

name	Emid1 (ENSMUSG00000034164)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000163299

name	Emid1 (ENSMUSG00000034164)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000151906

name	Emid1 (ENSMUSG00000034164)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000153308

name	Emid1 (ENSMUSG00000034164)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000156492

name	Rhbdd3 (ENSMUSG00000034175) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	CCDS:CCDS24397.1 Uniprot/SWISSPROT:Q8BP97 RefSeq_peptide:NP_001277421 RefSeq_peptide:NP_796344 RefSeq_mRNA:NM_001290492.1 RefSeq_mRNA:NM_177370.4 RefSeq_peptide_predicted:XP_006514777.1 RefSeq_peptide_predicted:XP_006514778.1 Vega_transcript:OTTMUST00000011353 Vega_transcript:Rhbdd3-001 Uniprot/SPTREMBL:B7ZNJ8 UCSC:uc007hwb.2 Fantom:5730411O18 Fantom:F830022F09 EMBL:AK077457 EMBL:AK156451 EMBL:AL645845 EMBL:BC096693 EMBL:BC132459 EMBL:BC138479 EMBL:BC145287 EMBL:BC145289 EMBL:CH466574 GO:GO:0000165 GO:GO:0001889 GO:GO:0002673 GO:GO:0004252 GO:GO:0005515 GO:GO:0005622 GO:GO:0006508 GO:GO:0009410 GO:GO:0016021 GO:GO:0032815 GO:GO:0045732 GO:GO:0050708 MGI_trans_name:Rhbdd3-001 Vega_translation:209002 Vega_translation:OTTMUSP00000005290 goslim_goa:GO:0003674 goslim_goa:GO:0005575 goslim_goa:GO:0005622 goslim_goa:GO:0005623 goslim_goa:GO:0006464 goslim_goa:GO:0007165 goslim_goa:GO:0008150 goslim_goa:GO:0008233 goslim_goa:GO:0048856 protein_id:AAH96693.1 protein_id:AAI32460.1 protein_id:AAI38480.1 protein_id:AAI45288.1 protein_id:AAI45290.1 protein_id:BAC36809.1 protein_id:BAE33717.1 protein_id:CAI25240.1 protein_id:CAI25241.1 protein_id:CAI25242.1 protein_id:EDL40522.1 OTTP:OTTMUSP00000005290 OTTT:OTTMUST00000011353 UniParc:UPI00000EB0DD
definition	note : transcript_id=ENSMUST00000101610 protein_id : ENSMUSP00000099131 translation : MHAWEAPGSLSRALPLASSVLMLLLSCLWLLGAGPSLRLAPELLMEPWQVHRLLTHALGHTALPGLLLSLLLLPTLGWWQECHLGTVRFLHNSTVLALATGLLAVLLAGLGVSGAAGGCGYMPVHLAMLAGQSHHPGWPQRTLPPWLLPWLLLALTLLLSSEPPFLQLLCGLLTGLAYAAGAFQWLELSEQRLQVLQEGVLCKSLARCWPLRLFPTPGSLGELPVTYPAGVRPATPRPPYLASSDSWPHSDGSAQLPPRLGPGQLTWKNSERGLDWAGSSFASATTMWAALDEQMLQEGIQASLLDVSVQGSQSSLWLPKPSVSSLRLQQLQHMGFPTEQAAVALAATGRVEGAVSLLVEGLVDTEALVTEGRSSPAHCTGTGAS

name	Rhbdd3 (ENSMUSG00000034175) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	CCDS:CCDS70133.1 Uniprot/SWISSPROT:Q8BP97 RefSeq_peptide:NP_001277420 RefSeq_mRNA:NM_001290491.1 RefSeq_mRNA_predicted:XM_006514717 Vega_transcript:OTTMUST00000011354 Vega_transcript:Rhbdd3-002 UCSC:uc007hwd.2 Fantom:5730411O18 Fantom:F830022F09 EMBL:AK077457 EMBL:AK156451 EMBL:AL645845 EMBL:BC096693 EMBL:BC132459 EMBL:BC145289 GO:GO:0000165 GO:GO:0001889 GO:GO:0002673 GO:GO:0004252 GO:GO:0005515 GO:GO:0005622 GO:GO:0006508 GO:GO:0009410 GO:GO:0016021 GO:GO:0032815 GO:GO:0045732 GO:GO:0050708 MGI_trans_name:Rhbdd3-002 Vega_translation:209003 Vega_translation:OTTMUSP00000005291 goslim_goa:GO:0003674 goslim_goa:GO:0005575 goslim_goa:GO:0005622 goslim_goa:GO:0005623 goslim_goa:GO:0006464 goslim_goa:GO:0007165 goslim_goa:GO:0008150 goslim_goa:GO:0008233 goslim_goa:GO:0048856 protein_id:AAH96693.1 protein_id:AAI32460.1 protein_id:AAI45290.1 protein_id:BAC36809.1 protein_id:BAE33717.1 protein_id:CAI25240.1 protein_id:CAI25241.1 protein_id:CAI25242.1 OTTP:OTTMUSP00000005291 OTTT:OTTMUST00000011354 UniParc:UPI000047051A
definition	note : transcript_id=ENSMUST00000036320 protein_id : ENSMUSP00000044703 translation : MHAWEAPGSLSRALPLASSVLMLLLSCLWLLGAGPSLRLAPELLMEPWQVHRLLTHALGHTALPGLLLSLLLLPTLGWWQECHLGTVRFLHNSTVLALATGLLAVLLAGLGVSGAAGGCGYMPVHLAMLAGQSHHPGWPQRTLPPWLLPWLLLALTLLLSSEPPFLQLLCGLLTGLACRCCWGLPVAGALRAETAGVTGRCPLQVSGPMLAAEALSHPGQSGPATPRPPYLASSDSWPHSDGSAQLPPRLGPGQLTWKNSERGLDWAGSSFASATTMWAALDEQMLQEGIQASLLDVSVQGSQSSLWLPKPSVSSLRLQQLQHMGFPTEQAAVALAATGRVEGAVSLLVEGLVDTEALVTEGRSSPAHCTGTGAS

name	Rhbdd3 (ENSMUSG00000034175) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	CCDS:CCDS24397.1 Uniprot/SWISSPROT:Q8BP97 RefSeq_peptide:NP_001277422 RefSeq_mRNA:NM_001290493.1 RefSeq_peptide_predicted:XP_006514777.1 RefSeq_peptide_predicted:XP_006514778.1 Uniprot/SPTREMBL:B7ZNJ8 UCSC:uc007hwe.2 Fantom:5730411O18 Fantom:F830022F09 EMBL:AK077457 EMBL:AK156451 EMBL:AL645845 EMBL:BC096693 EMBL:BC132459 EMBL:BC138479 EMBL:BC145287 EMBL:BC145289 EMBL:CH466574 GO:GO:0000165 GO:GO:0001889 GO:GO:0002673 GO:GO:0004252 GO:GO:0005515 GO:GO:0005622 GO:GO:0006508 GO:GO:0009410 GO:GO:0016021 GO:GO:0032815 GO:GO:0045732 GO:GO:0050708 MGI_trans_name:Rhbdd3-201 goslim_goa:GO:0003674 goslim_goa:GO:0005575 goslim_goa:GO:0005622 goslim_goa:GO:0005623 goslim_goa:GO:0006464 goslim_goa:GO:0007165 goslim_goa:GO:0008150 goslim_goa:GO:0008233 goslim_goa:GO:0048856 protein_id:AAH96693.1 protein_id:AAI32460.1 protein_id:AAI38480.1 protein_id:AAI45288.1 protein_id:AAI45290.1 protein_id:BAC36809.1 protein_id:BAE33717.1 protein_id:CAI25240.1 protein_id:CAI25241.1 protein_id:CAI25242.1 protein_id:EDL40522.1 UniParc:UPI00000EB0DD
definition	note : transcript_id=ENSMUST00000109878 protein_id : ENSMUSP00000105504 translation : MHAWEAPGSLSRALPLASSVLMLLLSCLWLLGAGPSLRLAPELLMEPWQVHRLLTHALGHTALPGLLLSLLLLPTLGWWQECHLGTVRFLHNSTVLALATGLLAVLLAGLGVSGAAGGCGYMPVHLAMLAGQSHHPGWPQRTLPPWLLPWLLLALTLLLSSEPPFLQLLCGLLTGLAYAAGAFQWLELSEQRLQVLQEGVLCKSLARCWPLRLFPTPGSLGELPVTYPAGVRPATPRPPYLASSDSWPHSDGSAQLPPRLGPGQLTWKNSERGLDWAGSSFASATTMWAALDEQMLQEGIQASLLDVSVQGSQSSLWLPKPSVSSLRLQQLQHMGFPTEQAAVALAATGRVEGAVSLLVEGLVDTEALVTEGRSSPAHCTGTGAS

name	Rhbdd3 (ENSMUSG00000034175) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000011356 Vega_transcript:Rhbdd3-004 Uniprot/SPTREMBL:Z4YMS1 UCSC:uc007hwe.2 EMBL:AL645845 GO:GO:0000165 GO:GO:0001889 GO:GO:0002673 GO:GO:0004252 GO:GO:0005515 GO:GO:0005622 GO:GO:0006508 GO:GO:0009410 GO:GO:0016021 GO:GO:0032815 GO:GO:0045732 GO:GO:0050708 MGI_trans_name:Rhbdd3-004 Vega_translation:209005 Vega_translation:OTTMUSP00000005293 goslim_goa:GO:0003674 goslim_goa:GO:0005575 goslim_goa:GO:0005622 goslim_goa:GO:0005623 goslim_goa:GO:0006464 goslim_goa:GO:0007165 goslim_goa:GO:0008150 goslim_goa:GO:0008233 goslim_goa:GO:0048856 OTTP:OTTMUSP00000005293 OTTT:OTTMUST00000011356 UniParc:UPI0000470519
definition	note : transcript_id=ENSMUST00000148761 protein_id : ENSMUSP00000120264 translation : MHAWEAPGSLSRALPLASSVLMLLLSCLWLLGAGPSLRLAPELLMEPWQVHRLLTHALGHTALPGLLLSLLLLPTLGWWQECHLGTVRFLHNSTVLALATGLLAVLLAGLGVSGAAGGCGYMPVHLAMLAGQSHHPGWPQRTLPPWLLPWLLLALTLLLSSEPPFLQLLCGLLTGLAYAAGAFQWLELSEQR

name	Emid1 (ENSMUSG00000034164) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	CCDS:CCDS24398.1 Uniprot/SWISSPROT:Q91VF5 RefSeq_peptide:NP_542162 RefSeq_mRNA:NM_080595.2 RefSeq_peptide_predicted:XP_006514579.1 RefSeq_peptide_predicted:XP_006514580.1 Vega_transcript:Emid1-001 Vega_transcript:OTTMUST00000011362 Uniprot/SPTREMBL:Q5SUT2 UCSC:uc007hwg.1 EMBL:AJ416093 EMBL:BC130023 EMBL:CH466574 GO:GO:0005515 GO:GO:0005578 GO:GO:0005581 GO:GO:0005783 GO:GO:0005794 GO:GO:0008150 MGI_trans_name:Emid1-001 Vega_translation:209008 Vega_translation:OTTMUSP00000005297 goslim_goa:GO:0003674 goslim_goa:GO:0005575 goslim_goa:GO:0005576 goslim_goa:GO:0005578 goslim_goa:GO:0005622 goslim_goa:GO:0005623 goslim_goa:GO:0005737 goslim_goa:GO:0005783 goslim_goa:GO:0005794 goslim_goa:GO:0008150 goslim_goa:GO:0043226 goslim_goa:GO:0043234 protein_id:AAI30024.1 protein_id:CAC94780.1 protein_id:EDL40525.1 OTTP:OTTMUSP00000005297 OTTT:OTTMUST00000011362 UniParc:UPI000002918A
definition	note : transcript_id=ENSMUST00000062821 protein_id : ENSMUSP00000061704 translation : MGGPRAWTLLCLGLLLPGGGAAWSVPGARFSGRRNWCSYVVTRTVSCHVQNGTYLQRVLQNCPWPMGCPGNSYRTVVRPLYKVTYKTVTAREWRCCPGHSGVTCEEGSPGLLEPTWTDSGMRRMAVRPTALSGCLNCSKVSELTERLKALEAKVAVLSVTEQTVPSVPATPEDSALLWGSPAARGSPGDGSLQDRLDSWGLPGPTGPKGGTDSQSPVRIRGPPGPQGPPGRPGQTGAAGTPGKMGPPGPPGPPGPPGPPAPVGPPYGQVSLHGDPLLSNTFTEMGSHWPQGPTGPPGPPGPPGPMGPPGLPGPMGAPGSPGHMGIPGPSGPKGTSGHPGEKGERGLPGEPGPQGLMGVPGEPGPKGDPGEKSHWGEGLHQLREALKILAERVLILETMIGLYEPDLGSGAGPDGTGTPSLLRGKRGGHPTNYPIITPRRRSERS

name	Emid1 (ENSMUSG00000034164) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	Vega_transcript:Emid1-002 Vega_transcript:OTTMUST00000011363 Uniprot/SPTREMBL:F6YMU2 UCSC:uc007hwf.1 GO:GO:0005515 GO:GO:0005578 GO:GO:0005783 GO:GO:0005794 GO:GO:0008150 MGI_trans_name:Emid1-002 Vega_translation:209009 Vega_translation:OTTMUSP00000005298 goslim_goa:GO:0003674 goslim_goa:GO:0005575 goslim_goa:GO:0005576 goslim_goa:GO:0005578 goslim_goa:GO:0005622 goslim_goa:GO:0005623 goslim_goa:GO:0005737 goslim_goa:GO:0005783 goslim_goa:GO:0005794 goslim_goa:GO:0008150 goslim_goa:GO:0043226 OTTP:OTTMUSP00000005298 OTTT:OTTMUST00000011363 UniParc:UPI000059DC25
definition	codon_start : 3 note : transcript_id=ENSMUST00000132328 protein_id : ENSMUSP00000117779 translation : XPQGPPGRPGQTGAAGTPGKMGPPGPPGPPGPPGPPAPVGPPYGQVSLHGDPLLSNTFTEMGSHWPQGPTGPPGPPGPPGPMGPPGLPGPMGAPGSPGHMGIPGPSGPKGTSGHPGEKGERGLPGEPGPQGLMGVPGEPGPKGDPGEKSHWAPSLQSFLQQQAQLELLARRVTLLEAIIWPEPDLGSGAGPDGTGTPSLLRGKRGGHPTNYPIITPRRRSERS

name	Emid1 (ENSMUSG00000034164) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	Uniprot/SWISSPROT:Q91VF5 UCSC:uc007hwg.1 EMBL:AJ416093 GO:GO:0005515 GO:GO:0005578 GO:GO:0005581 GO:GO:0005783 GO:GO:0005794 GO:GO:0008150 MGI_trans_name:Emid1-201 goslim_goa:GO:0003674 goslim_goa:GO:0005575 goslim_goa:GO:0005576 goslim_goa:GO:0005578 goslim_goa:GO:0005622 goslim_goa:GO:0005623 goslim_goa:GO:0005737 goslim_goa:GO:0005783 goslim_goa:GO:0005794 goslim_goa:GO:0008150 goslim_goa:GO:0043226 goslim_goa:GO:0043234 protein_id:CAC94780.1 UniParc:UPI00001D6A1B
definition	note : transcript_id=ENSMUST00000163299 protein_id : ENSMUSP00000131391 translation : MGGPRAWTLLCLGLLLPGGGAAWSVPGARFSGRRNWCSYVVTRTVSCHVQNGTYLQRVLQNCPWPMGCPGNRTVVRPLYKVTYKTVTAREWRCCPGHSGVTCEEGSPGLLEPTWTDSGMRRMAVRPTALSGCLNCSKVSELTERLKALEAKVAVLSVTEQTVPSVPATPEDSALLWGSPAARGSPGDGSLQDRLDSWGLPGPTGPKGGTDSQSPVRIRGPPGPQGPPGRPGQTGAAGTPGKMGPPGPPGPPGPPGPPAPVGPPYGQVSLHGDPLLSNTFTEMGSHWPQGPTGPPGPPGPPGPMGPPGLPGPMGAPGSPGHMGIPGPSGPKGTSGHPGEKGERGLPGEPGPQGLMGVPGEPGPKGDPGEKSHWGEGLHQLREALKILAERVLILETMIGLYEPDLGSGAGPDGTGTPSLLRGKRGGHPTNYPIITPRRRSERS

name	Emid1 (ENSMUSG00000034164) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	Vega_transcript:Emid1-005 Vega_transcript:OTTMUST00000011366 Uniprot/SPTREMBL:F6U7K9 UCSC:uc007hwf.1 GO:GO:0005515 GO:GO:0005578 GO:GO:0005783 GO:GO:0005794 GO:GO:0008150 MGI_trans_name:Emid1-005 Vega_translation:209012 Vega_translation:OTTMUSP00000047535 goslim_goa:GO:0003674 goslim_goa:GO:0005575 goslim_goa:GO:0005576 goslim_goa:GO:0005578 goslim_goa:GO:0005622 goslim_goa:GO:0005623 goslim_goa:GO:0005737 goslim_goa:GO:0005783 goslim_goa:GO:0005794 goslim_goa:GO:0008150 goslim_goa:GO:0043226 OTTP:OTTMUSP00000047535 OTTT:OTTMUST00000011366 UniParc:UPI0001DD3663
definition	codon_start : 3 note : transcript_id=ENSMUST00000151906 protein_id : ENSMUSP00000124014 translation : XPPGLPGPMGAPGSPGHMGIPGPSGPKGTSGHPGEKGERGLPGEPGPQGLMGVPGEPGPKGDPGEKSHWAPSLQSFLQQQAQLELLARRVTLLEAIIWPGYSQASWTKELLGFEGY

name	Emid1 (ENSMUSG00000034164) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	Vega_transcript:Emid1-004 Vega_transcript:OTTMUST00000011365 Uniprot/SPTREMBL:F7BCQ7 GO:GO:0005515 GO:GO:0005578 GO:GO:0005783 GO:GO:0005794 GO:GO:0008150 MGI_trans_name:Emid1-004 Vega_translation:209011 Vega_translation:OTTMUSP00000047534 goslim_goa:GO:0003674 goslim_goa:GO:0005575 goslim_goa:GO:0005576 goslim_goa:GO:0005578 goslim_goa:GO:0005622 goslim_goa:GO:0005623 goslim_goa:GO:0005737 goslim_goa:GO:0005783 goslim_goa:GO:0005794 goslim_goa:GO:0008150 goslim_goa:GO:0043226 OTTP:OTTMUSP00000047534 OTTT:OTTMUST00000011365 UniParc:UPI0001DD3664
definition	codon_start : 2 note : transcript_id=ENSMUST00000153308 protein_id : ENSMUSP00000125605 translation : XGPSGPKGTSGHPGEKGERGLPGEPGPQGLMGVPGEPGPKGDPGEKSHWPHQAVG

name	Emid1 (ENSMUSG00000034164) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	Vega_transcript:Emid1-003 Vega_transcript:OTTMUST00000011364 Uniprot/SPTREMBL:E0CY77 EMBL:AL645845 GO:GO:0005515 GO:GO:0005578 GO:GO:0005783 GO:GO:0005794 GO:GO:0008150 MGI_trans_name:Emid1-003 Vega_translation:209010 Vega_translation:OTTMUSP00000047533 goslim_goa:GO:0003674 goslim_goa:GO:0005575 goslim_goa:GO:0005576 goslim_goa:GO:0005578 goslim_goa:GO:0005622 goslim_goa:GO:0005623 goslim_goa:GO:0005737 goslim_goa:GO:0005783 goslim_goa:GO:0005794 goslim_goa:GO:0008150 goslim_goa:GO:0043226 OTTP:OTTMUSP00000047533 OTTT:OTTMUST00000011364 UniParc:UPI0001DD3665
definition	note : transcript_id=ENSMUST00000156492 protein_id : ENSMUSP00000124431 translation : MGGPRAWTLLCLGLLLPGGGAAWSVPGARFSGRRNWCSYVVTRTVSCHVQNGTYLQRVLQNCPWPMGCPGNSYRTVVRPLYKVTYKTVTAREWRCCPGHSGVTCEEGSPGLLEPTWTDSGMRRMAVRPTALSGCLNCSKVSELTERLKALEAKVSSP

name
type	STS
link
xref	UniSTS_NUM:180146 UniSTS:AW122071 WI_MRC-RH:702148
definition	note : map_weight=1 standard_name : AW122071

name
type	misc_feature
link
xref
definition	note : contig AL645845.14 2001..109446(1)

name	Rhbdd3 (ENSMUSG00000034175)
type	misc_RNA
link	VEGA Ensembl MGI
xref	RefSeq_ncRNA:NR_110961 Vega_transcript:OTTMUST00000011361 Vega_transcript:OTTMUST00000011361 UCSC:uc011xrc.2 MGI_trans_name:Rhbdd3-009 OTTT:OTTMUST00000011361
definition	note : processed_transcript note : transcript_id=ENSMUST00000129016

name	Emid1 (ENSMUSG00000034164)
type	misc_RNA
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000011367 Vega_transcript:OTTMUST00000011367 MGI_trans_name:Emid1-006 OTTT:OTTMUST00000011367
definition	note : retained_intron note : transcript_id=ENSMUST00000132196

name	Emid1 (ENSMUSG00000034164)
type	misc_RNA
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000011368 Vega_transcript:OTTMUST00000011368 MGI_trans_name:Emid1-007 OTTT:OTTMUST00000011368
definition	note : processed_transcript note : transcript_id=ENSMUST00000138551

Polymorphisms Report

Target Strain	MSMv4 JF1v3 KJRv1 SWNv1 CHDv1 NJLv1 BLG2v1 HMIv1 BFMv1 PGN2v1

Gene Symbol (Gene ID)	Emid1 (ENSMUSG00000034164)
Transcript ID	ENSMUST00000163299

Reports
substitution
cSNPs	5
Insertion	28
Deletion	27
SNPs	+1kb 5154160(c.-1938G>A), 5154319(c.-2097G>A), 5154558(c.-2336C>T), 5154586(c.-2364A>G), 5155320(c.-3098C>A), 5155353(c.-3131C>T), 5155845(c.-3623A>G), 5157079(c.-4857C>T), 5157111(c.-4889A>G), 5'UTR CDS 5128884(c.1057T>G), 5129456(c.935T>C), 5130677(c.766C>T), 5143900(c.240A>G), 5144354(c.156T>G), 3'UTR 5106315(c.527G>A), 5106338(c.504G>A), 5106366(c.476C>A), 5106379(c.463G>A), 5106822(c.20C>T), INTRON 5107029(c.1202-60A>T), 5107088(c.1202-119G>A), 5107180(c.1202-211A>G), 5107327(c.1202-358A>G), 5107410(c.1202-441C>T), 5107441(c.1202-472T>A), 5107718(c.1202-749G>T), 5108020(c.1202-1051T>A), 5108028(c.1202-1059T>C), 5108050(c.1202-1081T>C), 5108092(c.1202-1123A>G), 5108098(c.1202-1129G>A), 5108109(c.1202-1140G>C), 5108146(c.1202-1177A>G), 5108297(c.1202-1328T>A), 5108355(c.1202-1386T>G), 5108368(c.1202-1399A>G), 5108402(c.1202-1433A>G), 5108441(c.1202-1472G>A), 5108454(c.1202-1485G>A), 5108459(c.1202-1490A>G), 5108506(c.1202-1537G>A), 5108557(c.1202-1588A>G), 5108687(c.1202-1718G>A), 5108793(c.1202-1824A>C), 5108808(c.1202-1839C>T), 5108833(c.1201+1857T>C), 5108854(c.1201+1836T>C), 5108885(c.1201+1805A>C), 5109013(c.1201+1677C>A), 5109153(c.1201+1537G>A), 5109394(c.1201+1296G>A), 5109408(c.1201+1282G>A), 5109525(c.1201+1165G>A), 5109774(c.1201+916A>G), 5109879(c.1201+811A>G), 5109991(c.1201+699A>G), 5110000(c.1201+690T>A), 5110005(c.1201+685A>G), 5110011(c.1201+679A>G), 5110012(c.1201+678C>T), 5110030(c.1201+660C>T), 5110075(c.1201+615T>C), 5110151(c.1201+539G>C), 5110420(c.1201+270C>T), 5110459(c.1201+231C>T), 5110461(c.1201+229C>T), 5110523(c.1201+167A>G), 5110878(c.1117-104T>C), 5111297(c.1117-523G>C), 5111343(c.1117-569T>C), 5111551(c.1117-777C>T), 5111615(c.1117-841A>G), 5111639(c.1117-865G>A), 5112018(c.1117-1244G>A), 5112160(c.1117-1386A>C), 5112229(c.1117-1455A>G), 5112230(c.1117-1456C>T), 5112285(c.1117-1511A>G), 5112287(c.1117-1513G>A), 5112325(c.1117-1551G>T), 5112436(c.1117-1662C>G), 5112441(c.1117-1667G>T), 5112687(c.1117-1913T>C), 5112749(c.1117-1975G>A), 5112780(c.1117-2006C>A), 5112964(c.1117-2190G>A), 5113043(c.1117-2269C>T), 5113432(c.1117-2658G>A), 5113488(c.1117-2714T>C), 5113724(c.1117-2950G>A), 5113741(c.1117-2967T>C), 5113878(c.1116+3002G>A), 5113909(c.1116+2971G>A), 5114159(c.1116+2721G>A), 5114162(c.1116+2718C>T), 5114189(c.1116+2691T>A), 5114524(c.1116+2356A>G), 5114538(c.1116+2342T>C), 5114555(c.1116+2325T>G), 5114804(c.1116+2076C>G), 5115135(c.1116+1745C>T), 5115160(c.1116+1720A>G), 5115555(c.1116+1325C>G), 5115617(c.1116+1263C>G), 5115677(c.1116+1203T>G), 5115913(c.1116+967C>T), 5115941(c.1116+939A>G), 5116088(c.1116+792C>T), 5116214(c.1116+666C>T), 5116324(c.1116+556A>G), 5117643(c.1072-719A>G), 5117644(c.1072-720C>T), 5117703(c.1072-779G>A), 5118199(c.1072-1275A>G), 5118389(c.1072-1465T>A), 5118883(c.1072-1959T>C), 5119480(c.1072-2556C>T), 5119830(c.1072-2906G>T), 5120001(c.1072-3077C>G), 5120060(c.1072-3136C>T), 5120063(c.1072-3139T>C), 5120173(c.1072-3249A>G), 5120347(c.1072-3423C>G), 5120855(c.1072-3931G>A), 5121189(c.1072-4265T>C), 5121270(c.1072-4346G>C), 5121316(c.1072-4392G>A), 5121342(c.1072-4418C>T), 5121695(c.1072-4771G>C), 5121822(c.1072-4898C>A), 5121863(c.1072-4939T>C), 5121943(c.1072-5019T>C), 5123079(c.1071+5791T>C), 5124082(c.1071+4788G>A), 5124423(c.1071+4447A>G), 5124424(c.1071+4446C>T), 5124435(c.1071+4435A>T), 5124553(c.1071+4317C>T), 5124623(c.1071+4247G>T), 5125121(c.1071+3749C>T), 5125127(c.1071+3743T>A), 5125426(c.1071+3444T>C), 5125469(c.1071+3401G>T), 5125792(c.1071+3078A>G), 5126115(c.1071+2755A>C), 5126136(c.1071+2734A>T), 5126266(c.1071+2604G>A), 5126285(c.1071+2585T>C), 5126295(c.1071+2575T>C), 5126459(c.1071+2411A>C), 5126691(c.1071+2179A>G), 5126723(c.1071+2147T>C), 5128237(c.1071+633A>C), 5128962(c.1026+47A>G), 5129172(c.964-101A>G), 5129204(c.964-133C>A), 5129381(c.963+47T>C), 5129783(c.812-63T>G), 5129790(c.812-70T>C), 5129792(c.812-72T>C), 5129794(c.812-74T>C), 5129805(c.812-85T>C), 5129822(c.812-102T>C), 5129949(c.812-229C>T), 5130147(c.812-427T>C), 5130157(c.812-437T>G), 5130226(c.811+406C>A), 5130311(c.811+321A>G), 5130357(c.811+275T>A), 5130360(c.811+272T>G), 5130361(c.811+271C>T), 5130454(c.811+178T>C), 5130455(c.811+177A>T), 5130594(c.811+38C>T), 5130811(c.665-33T>C), 5131005(c.665-227G>A), 5131008(c.665-230C>T), 5131019(c.665-241G>A), 5131272(c.664+210G>A), 5131298(c.664+184G>A), 5131336(c.664+146A>T), 5131623(c.575-52A>T), 5131645(c.575-74G>A), 5131653(c.575-82G>A), 5131664(c.575-93G>A), 5131677(c.575-106T>C), 5131727(c.575-156A>G), 5131774(c.574+146A>G), 5131796(c.574+124A>G), 5132136(c.454-96A>G), 5132357(c.454-317T>C), 5132366(c.454-326T>C), 5132664(c.454-624C>T), 5132674(c.454-634C>T), 5132836(c.454-796G>A), 5132837(c.454-797T>C), 5132842(c.454-802A>G), 5132861(c.454-821G>A), 5132949(c.454-909T>C), 5133008(c.454-968A>G), 5133009(c.454-969C>G), 5133016(c.454-976C>G), 5133033(c.454-993G>A), 5133038(c.454-998C>T), 5133243(c.453+1106T>G), 5133418(c.453+931A>G), 5133450(c.453+899G>A), 5133532(c.453+817A>G), 5133619(c.453+730C>T), 5133697(c.453+652A>G), 5133800(c.453+549A>G), 5133875(c.453+474A>T), 5133900(c.453+449G>A), 5134491(c.392-81T>G), 5134575(c.392-165G>A), 5135043(c.391+311C>G), 5135289(c.391+65A>G), 5135343(c.391+11C>T), 5136454(c.314-1023T>C), 5136503(c.314-1072C>T), 5136513(c.314-1082A>G), 5136640(c.314-1209G>A), 5136700(c.314-1269C>T), 5136728(c.314-1297C>T), 5136773(c.314-1342C>A), 5136774(c.314-1343C>A), 5136871(c.314-1440A>G), 5136984(c.314-1553G>A), 5137228(c.314-1797G>T), 5137250(c.314-1819G>A), 5137471(c.314-2040A>G), 5137487(c.314-2056T>A), 5137496(c.314-2065T>C), 5137513(c.314-2082G>A), 5137545(c.314-2114A>G), 5137559(c.314-2128A>G), 5137598(c.314-2167G>C), 5138813(c.314-3382T>A), 5138996(c.314-3565T>G), 5139320(c.314-3889G>A), 5139337(c.314-3906T>C), 5139358(c.314-3927T>C), 5139413(c.314-3982C>T), 5139490(c.314-4059A>T), 5139656(c.313+4171G>A), 5139695(c.313+4132G>A), 5139713(c.313+4114T>C), 5139783(c.313+4044C>T), 5139840(c.313+3987A>G), 5140302(c.313+3525T>C), 5140405(c.313+3422G>T), 5140500(c.313+3327T>C), 5140600(c.313+3227A>G), 5140658(c.313+3169C>T), 5140661(c.313+3166A>G), 5140688(c.313+3139C>G), 5140716(c.313+3111A>T), 5140749(c.313+3078T>C), 5140762(c.313+3065C>G), 5140933(c.313+2894G>A), 5141193(c.313+2634G>A), 5141232(c.313+2595A>C), 5141254(c.313+2573A>C), 5141305(c.313+2522T>C), 5141318(c.313+2509G>A), 5141398(c.313+2429C>T), 5141415(c.313+2412G>A), 5141564(c.313+2263T>G), 5141632(c.313+2195G>A), 5141645(c.313+2182A>G), 5141744(c.313+2083G>C), 5141824(c.313+2003C>T), 5141843(c.313+1984G>A), 5141847(c.313+1980T>C), 5141851(c.313+1976G>A), 5141852(c.313+1975A>G), 5141861(c.313+1966G>A), 5141926(c.313+1901A>T), 5141943(c.313+1884C>G), 5142473(c.313+1354A>G), 5142474(c.313+1353C>T), 5142680(c.313+1147G>A), 5142698(c.313+1129C>T), 5142901(c.313+926G>T), 5142932(c.313+895C>T), 5142983(c.313+844C>T), 5143187(c.313+640C>G), 5143215(c.313+612A>G), 5143282(c.313+545G>A), 5143296(c.313+531C>A), 5143499(c.313+328A>G), 5143757(c.313+70C>T), 5143813(c.313+14C>T), 5143988(c.216-64C>T), 5144007(c.216-83A>G), 5144044(c.216-120C>G), 5144166(c.215+129C>T), 5144271(c.215+24G>A), 5144272(c.215+23T>C), 5144634(c.102-226C>T), 5144707(c.102-299C>T), 5144722(c.102-314T>C), 5144761(c.102-353C>T), 5145715(c.102-1307A>G), 5145759(c.102-1351A>G), 5145775(c.102-1367C>A), 5145960(c.102-1552C>G), 5146131(c.102-1723A>G), 5146221(c.102-1813G>T), 5146289(c.102-1881C>T), 5147500(c.102-3092C>T), 5147564(c.102-3156C>T), 5147711(c.102-3303G>A), 5147792(c.102-3384C>G), 5149474(c.101+2648A>G), 5149556(c.101+2566C>T), 5149831(c.101+2291G>A), 5150610(c.101+1512C>A), 5150808(c.101+1314T>C), -1kb 5101301(c.5541C>T), 5101306(c.5536G>A), 5102544(c.4298A>T), 5102672(c.4170G>T), 5102702(c.4140G>A), 5102774(c.4068C>T), 5102994(c.3848C>A), 5103065(c.3777C>A), 5103282(c.3560A>G), 5103363(c.3479G>C), 5103382(c.3460A>G), 5103439(c.3403C>T), 5103698(c.3144T>C), 5103854(c.2988C>T), 5103869(c.2973G>A), 5103915(c.2927C>T), 5104143(c.2699G>A), 5104154(c.2688A>G), 5104262(c.2580A>C), 5104364(c.2478G>A), 5104489(c.2353C>T), 5104775(c.2067C>A), 5104777(c.2065C>T), 5104792(c.2050C>A), 5104905(c.1937A>G), 5105035(c.1807G>A), 5105282(c.1560C>T), 5105689(c.1153A>G), 5105742(c.1100T>C), 5105903(c.939G>T), 5106007(c.835G>C),
Insertions	+1kb 5156546 (c.-4325_-4324insC), 5'UTR CDS 3'UTR 5106589 (c.251_252dupAA), INTRON 5107969 (c.1202-1001_1202-1000insA), 5109699 (c.1201+990dupC), 5112173 (c.1117-1400_1117-1399insAC), 5112379 (c.1117-1606dupA), 5114375 (c.1116+2504dupA), 5120432 (c.1072-3509_1072-3508insAC), 5123562 (c.1071+5302_1071+5307dupATTGTG), 5124578 (c.1071+4291_1071+4292insA), 5125045 (c.1071+3824dupT), 5128182 (c.1071+683_1071+687dupTTTTT), 5128645 (c.1071+222_1071+224dupTTT), 5129520 (c.911-41dupT), 5131162 (c.664+319_664+320insTC), 5131348 (c.664+132_664+133dupGA), 5132190 (c.454-151dupT), 5135884 (c.314-454_314-453insA), 5136457 (c.314-1027dupA), 5137001 (c.314-1571dupA), 5138571 (c.314-3141_314-3140insTG), 5139920 (c.313+3906_313+3907insCCC), 5140976 (c.313+2850dupC), 5144599 (c.102-192_102-191insCCCCAGC), 5147681 (c.102-3274_102-3273insCCACA), 5148431 (c.101+3690_101+3691insCA), 5151538 (c.101+582_101+583dupTT), -1kb 5102561 (c.*4280dupC),
Deletions	+1kb 5153180 (c.-960_-959delCA), 5155275 (c.-3054delG), 5'UTR CDS 3'UTR 5106820 (c.21delC), INTRON 5107277 (c.1202-309delG), 5111841 (c.1117-1069_1117-1068delCA), 5112512 (c.1117-1740_1117-1739delGT), 5112982 (c.1117-2214_1117-2209delTTGTTT), 5113776 (c.1117-3006_1117-3003delTCTG), 5116054 (c.1116+817_1116+825delAGGACCTCA), 5121599 (c.1072-4676delT), 5125271 (c.1071+3595_1071+3598delACAA), 5126192 (c.1071+2676_1071+2677delCA), 5126336 (c.1071+2533delA), 5129205 (c.964-135delT), 5129825 (c.812-107_812-106delCG), 5132445 (c.454-407_454-406delCA), 5132649 (c.454-613_454-610delATAC), 5132717 (c.454-679_454-678delGC), 5132794 (c.454-755delC), 5132796 (c.454-757delC), 5134057 (c.453+290_453+291delAT), 5141232 (c.313+2594delG), 5141553 (c.313+2273delG), 5143366 (c.313+460delT), 5147081 (c.102-2679_102-2674delTGTGTC), 5149371 (c.101+2750delC), -1kb 5102945 (c.3895_*3896delAT),
coding sequence substitutions
premature termination by the nucleotide substitution	0
synonymous num	2
non-synonymous num	3
synonymous substitutions	5143900 (p.Lys80Lys), 5144354 (p.Gly52Gly),
non-synonymous substitutions	5128884 (p.Leu353Val), 5129456 (p.Met312Thr), 5130677 (p.Pro256Ser),
B6 transcript (ENSMUST00000163299)	MGGPRAWTLLCLGLLLPGGGAAWSVPGARFSGRRNWCSYVVTRTVSCHVQNGTYLQRVLQ NCPWPMGCPGNRTVVRPLYKVTYKTVTAREWRCCPGHSGVTCEEGSPGLLEPTWTDSGMR RMAVRPTALSGCLNCSKVSELTERLKALEAKVAVLSVTEQTVPSVPATPEDSALLWGSPA ARGSPGDGSLQDRLDSWGLPGPTGPKGGTDSQSPVRIRGPPGPQGPPGRPGQTGAAGTPG KMGPPGPPGPPGPPGPPAPVGPPYGQVSLHGDPLLSNTFTEMGSHWPQGPTGPPGPPGPP GPMGPPGLPGPMGAPGSPGHMGIPGPSGPKGTSGHPGEKGERGLPGEPGPQGLMGVPGEP GPKGDPGEKSHWGEGLHQLREALKILAERVLILETMIGLYEPDLGSGAGPDGTGTPSLLR GKRGGHPTNYPIITPRRRSERS*
MSMv4 transcript	MGGPRAWTLLCLGLLLPGGGAAWSVPGARFSGRRNWCSYVVTRTVSCHVQNGTYLQRVLQ NCPWPMGCPGNRTVVRPLYKVTYKTVTAREWRCCPGHSGVTCEEGSPGLLEPTWTDSGMR RMAVRPTALSGCLNCSKVSELTERLKALEAKVAVLSVTEQTVPSVPATPEDSALLWGSPA ARGSPGDGSLQDRLDSWGLPGPTGPKGGTDSQSPVRIRGPPGPQGPPGRPGQTGAAGTPG KMGPPGPPGPPGPPGSPAPVGPPYGQVSLHGDPLLSNTFTEMGSHWPQGPTGPPGPPGPP GPMGPPGLPGPTGAPGSPGHMGIPGPSGPKGTSGHPGEKGERGLPGEPGPQGVMGVPGEP GPKGDPGEKSHWGEGLHQLREALKILAERVLILETMIGLYEPDLGSGAGPDGTGTPSLLR GKRGGHPTNYPIITPRRRSERS*
homology	99.32 (443 / 443)

Exon Detail Report

Target Strain	MSMv4 JF1v3 KJRv1 SWNv1 CHDv1 NJLv1 BLG2v1 HMIv1 BFMv1 PGN2v1

Gene Symbol (Gene ID)	Emid1 (ENSMUSG00000034164)
Transcript ID	ENSMUST00000163299


..........TATGTGTGTACATATATGTACATATATGTTCATATACACACATGTTCATA
TACACACACATGCACACGTGTACACAAACATGATATGCATGCATACAGGCATCTCACGTG
TACACAGACATACATGCATACACATGCCCACCACACAAACACATACATTGTTCATTCAAA
TATGGCGTACATAAGCAAATACTGCCCATGCTCACAAACACATCGTGTACACACAGATTC
AGCACATACATGTTTACAGCGCCGTGCATGCATACAACATTATCCATGCACACAAATAGT
CTATCATGTCAGCACAGGCAAACTCCTCGCACCTGCTATGCCGCGTGGAATGTGCCTGAG
TCCCACCCAGGCCCTCTGCTCTCAGCCAGTCCTTACCTTAGGGAATGGGAAATTGAGGCC
TATGCCAAAATGCTGTCTACACTTGTGCTTAGACCCCAACACTGAGATGAGGGGATTGTG
GGTCTGGGGTTACTCTGCCAGAGTGCTCTGGGCCTTAGTGTCTCCCTGTAAAACAGGTAT
AAGGGTCACTGCACTTAGGGGACGCGGGAGCACCTGAGCCTCGGGTTTCTCCTCCGTAAC
ATGGGCGACCTAGCCAGCCCAACACGGAGTGATGAAAGCTTTAGTCAGGGCAGGATGTAT
GGGGTGAGATGCCTGGGACAATGGCACAGCTCGCGCAGGAAGCCTGTGTTAGGTCGATGG
GAAGATCCTGTGTGTTTCGGGAACCCAGTTCCGCAAAGATGTCAAAGATGTGCGTCCAGA
GGCGATCGCTCTGGAGTGGTGGGTTCAGGTCCTGGCAGCGTTGCGGGGACGAGGGGGCGG
GTGCGGCCAGGGCCTCAGTTTCCCAGTCTGCGGCTCAGGTGGGCACCTGGAGGGCGTCCT
GGCGGGGGCGCGGACGGCTTCCGGGTTGGCGGGGGGCGGGGGGCGAGGGGCGGGCGAAGC
CGAGCGCCCCCGCCCTGCTCCGCCCGGAACCGGCTCTGCGCGCCCGCGGC
TGCGGTGGGGACGACAGCATGGGCGGCCCGCGGGCCTGGACGCTGCTCTGCCTCGGGCTCCTGCTCCCGGGAGGCGGCGCCGCGTGGAGCGTCCCGGGCGCCCGGTTCTCGGGTCGCAG
GTAAGTCTCCCCTAGCTCTGTGCAA..........CTTCCCTTCTGTGGGTTTGTCTCAG
GAACTGGTGCTCCTACGTGGTGACCCGGACTGTCTCCTGCCACGTGCAAAATGGGACCTACCTCCAGCGAGTGCTACAGAACTGCCCGTGGCCCATGGGCTGCCCTGGGAACAG
GTGAGCAGAATTGTGGTGGGGACAG..........TACCTGGCCTTTCTTTCAGCTACAG
AACCGTGGTGAGACCCTTGTACAAGGTGACGTACAAGACAGTGACGGCCCGAGAATGGAGGTGCTGCCCTGGACATTCAGGGGTGACCTGTGAGGAAG
GTAGGACCTGGGATCTGGGCCTGGG..........TTAGCCCACTGTACCTCCATTGCAG
GCTCCCCTGGCCTCCTGGAGCCCACGTGGACGGACAGCGGCATGCGGCGGATGGCAGTGAGGCCCACAGCCCTCTCAG
GTGCGTCCTGTGGTGGCCTCTGGAG..........GTCCAGCCTTCCTCCCTGCCCACAG
GTTGTCTCAACTGCAGCAAAGTGTCTGAGCTGACAGAGAGGCTGAAGGCGCTGGAGGCCAAG
GTGGGTGAGCAGCCCCCACTCTTGC..........CCTCTGTCTTCCTCTTCCTGCACAG
GTGGCGGTGCTGAGTGTGACAGAGCAGACAGTGCCCTCAGTCCCAGCCACCCCTGAGGACTCTGCCCTGCTCTGGGGCTCCCCGGCTGCCCGGGGCAGCCCTGGAGATGGAAGCCTGCAGG
GTAAGGGATACAGCAGGGTACATAC..........TAAGGGCATGTTCTTTCCTCTGCAG
ATAGACTTGATTCTTGGGGGCTTCCTGGGCCCACAGGCCCCAAGGGAGGCACCGACAGCCAGAGCCCAGTGAGGATTAGAGGCCCGCCAG
GTGAGTGCACCCTGAGCGCCTCCTT..........CCACTAGTCCCTGTTCTTACTGCAG
GCCCACAGGGACCCCCAGGACGCCCTGGCCAAACAGGAGCTGCAGGCACCCCTGGAAAGATGGGACCTCCAGGGCCTCCAGGTCCACCTGGACCCCCAGGGTCTCCAGCCCCTGTAGGGCCACCCTATGGCCAGGTCTCTCTGCATG
GTAAGTCCCCCTGGAATCCCAGTGG..........CACACTCACTGTCTGTCCCTCCCAG
GGGATCCACTGCTGTCTAATACCTTCACTGAGATGGGCAGCCACTGGCCCCAAGGACCCACTGGGCCCCCAGGTCCTCCAGGCCCCCCAGGGCCCATGG
GTAAGTTGAGTCCAGGTGGGGGATG..........CCTGAAGACGTTGTGTTTTATTCAG
GTCCTCCTGGACTTCCTGGCCCCACGGGTGCCCCTGGGAGTCCTGGACACATG
GTAAGTCATTATCCAAGTTCTTCCA..........GCTGAGCCTCTGTCTTGTTGTTCAG
GGAATCCCAGGCCCTTCTGGACCCAAAGGAACCTCTGGCCACCCAGGAGAGAAGGGAGAGAGA
GTGAGTGAACACGTGGGGGATTCTG..........ATTCTTTTTCCCTTCTCTGATACAG
GGACTGCCTGGGGAACCTGGCCCCCAGGGTGTGATGGGGGTTCCG
GTAAGTGATGCAGTGCTCTCCCATG..........TACTTCTGTCTCTGACTTCTTTCAG
GGAGAACCTGGCCCCAAAGGAGACCCTGGTGAGAAGAGCCACTGG
GTAAGCTGCAGCCCTGCACCTGCCT..........CTGCATCTGTCTCTTTCCTCCACAG
GGGGAGGGGTTGCACCAACTACGCGAGGCTTTGAAGATTTTAGCTGAGAGGGTTTTAATCTTGGAAACAATGATTGGGCTCTATG
GTGAGTAGAGACAGACAGACGGCCA..........CCTCTCTCCTTATTCCCTCCGGCAG
AACCAGACTTGGGATCCGGGGCAGGCCCTGATGGCACAGGTACCCCCAGCCTCCTTCGAGGCAAGAGGGGAGGACACCCAACCAACTACCCGATCATCACCCCCAGGAGACGCAGCGAGAGGAGCTGAGAGGCTGCAGGCTTCCTCCCCTAGCCTGGACCTGACCCGCTGCCTCCGGGACTGCCAGGTCCTATTTATTAATACCCTCAGGGATCCCTTGGTCTTAGGGGTAGGCAGATCTCAGTGATGGCAGCCTATAACATGACAGACTAAACAGGGACTGGGCCTCAAAAAGTCAGGCCTCACTTGCACCCGGCCTGGTTGGTTCCCTCTGTGAAATGGGGTGAAAAGGCTTTGAATGGGGGGTGGACGGAGGTACAAGTCACGTCAGCTGCCTAAAGTTAGGACCTGGGACCGCCTGGCCCTGCAGATATGCAAGGATTGGGGCGGAAGTCTCAGTTCCCCTCCTGTAAAACCTTGGGGAGTCCTGTGTGCCCCTTGTTTTCTGGTGCTGAGTTCCCACCTGAGTCCAGGCTGCTTAATCTAACTGAACGGTCGGTGCTTCTTATATCAGCTCTACCCCAGGCCCCTACTCCCATGTCCTATGTGGGAATGGGATGTGTACAAGGGACACCTACTCCAAGTGTCTGCTGCAAATGCCACGAGTCAATATGTACAGGACAATAAACATCCCTGCTTGACCCT
ACTTCGCTTGGTCTCTATGTGCTGCCCAGGGCAGCCAGAAAGGGCCACCCAAGCCAAGGA
TATGGGGGCAGGATCCTCCTTCAACAGCCACACATTCACTGTTGCTCACTCCTTCCTCCA
TGATGCCAACACAGAGGAGCCAGACATGACAACTGACACTCAGGAGACCAGGTTGAAAAA
CAAATCAGCTTTTATTCTTACAAAGTACCAGGGAAACATGTTGGGGCCTAGTCCTACCCC
AGGGATGCAGTCAAGACCCCACCAAGCCCTCAGCAGACAAGGAAAGGACTATGAGGCCCC
AGTGCCTGTGCAGTGGGCAGGGCTACTCCTTCCCTCAGTCACTAGGGCCTCAGTGTCCAC
TATCCCTTCCACCAGCAGTGACACTGCCCCCTCTACACGCCCTGTAGCTGCCAAGGCCAC
TGCAGCCTGCTCAGTGGGGAATCCCATGTGCTGTAGCTGCTGCAGCCTGTGAGGTAGGAC
AAGGAAGAAATGTCAGGACAGCATGGCTCCCATAGCAGGAGGCCGCACCCCTGCCCACCC
TGCCTTACCTTAGAGAAGACACAGAGGGCTTTGGCAGCCACAGAGAGCTCTGGGAACCCT
GAACTGACACATCAAGAAGGGAGGCCTGGATCCCTTCCTGTAGCATCTGCTCGTCTAGGG
CTGCCCACATCGTCGTTGCTGAAGCAAAGCTAGACCCAGCCCAGTCCAAGCCCCTCTCCG
AGTTCTTCCATGTCAGCTGTCCAGGCCCCAGGCGTGGTGGGAGCTGAGCAGAGCCATCAC
TGTGAGGCCAGGAGTCTGAGGAAGCCAGGTAAGGAGGTCTAGGGGTGGCAGGCCTGTAGG
GACAGAGGTGGATGGCCTGGACTGCCAGCCACTGTCACAACTTCCACCATCCAACACTGA
GCCCAACACCACCCTCACCTCACTCCAGCAGGATAAGTGACAGGCAGCTCACCCAGACTG
CCCGGGGTGGGAAAGAGCCTCAGTGGCCAGCATCGGGCCA..........

No.	Exon / Intron	Start	End	Start Phase	End Phase	Length	Sequence
	5' upstream sequence						..........TATGTGTGTACATATATGTACATATATGTTCATATACACACATGTTCATA TACACACACATGCACACGTGTACACAAACATGATATGCATGCATACAGGCATCTCACGTG TACACAGACATACATGCATACACATGCCCACCACACAAACACATACATTGTTCATTCAAA TATGGCGTACATAAGCAAATACTGCCCATGCTCACAAACACATCGTGTACACACAGATTC AGCACATACATGTTTACAGCGCCGTGCATGCATACAACATTATCCATGCACACAAATAGT CTATCATGTCAGCACAGGCAAACTCCTCGCACCTGCTATGCCGCGTGGAATGTGCCTGAG TCCCACCCAGGCCCTCTGCTCTCAGCCAGTCCTTACCTTAGGGAATGGGAAATTGAGGCC TATGCCAAAATGCTGTCTACACTTGTGCTTAGACCCCAACACTGAGATGAGGGGATTGTG GGTCTGGGGTTACTCTGCCAGAGTGCTCTGGGCCTTAGTGTCTCCCTGTAAAACAGGTAT AAGGGTCACTGCACTTAGGGGACGCGGGAGCACCTGAGCCTCGGGTTTCTCCTCCGTAAC ATGGGCGACCTAGCCAGCCCAACACGGAGTGATGAAAGCTTTAGTCAGGGCAGGATGTAT GGGGTGAGATGCCTGGGACAATGGCACAGCTCGCGCAGGAAGCCTGTGTTAGGTCGATGG GAAGATCCTGTGTGTTTCGGGAACCCAGTTCCGCAAAGATGTCAAAGATGTGCGTCCAGA GGCGATCGCTCTGGAGTGGTGGGTTCAGGTCCTGGCAGCGTTGCGGGGACGAGGGGGCGG GTGCGGCCAGGGCCTCAGTTTCCCAGTCTGCGGCTCAGGTGGGCACCTGGAGGGCGTCCT GGCGGGGGCGCGGACGGCTTCCGGGTTGGCGGGGGGCGGGGGGCGAGGGGCGGGCGAAGC CGAGCGCCCCCGCCCTGCTCCGCCCGGAACCGGCTCTGCGCGCCCGCGGC
1	EXON 1	5152122	5152240	-	2	119	TGCGGTGGGGACGACAGCATGGGCGGCCCGCGGGCCTGGACGCTGCTCTGCCTCGGGCTC CTGCTCCCGGGAGGCGGCGCCGCGTGGAGCGTCCCGGGCGCCCGGTTCTCGGGTCGCAG
	INTRON 1 - 2	5144409	5152121			7713	GTAAGTCTCCCCTAGCTCTGTGCAA..........CTTCCCTTCTGTGGGTTTGTCTCAG
2	EXON 2	5144295	5144408	2	2	114	GAACTGGTGCTCCTACGTGGTGACCCGGACTGTCTCCTGCCACGTGCAAAATGGGACCTA CCTCCAGCGAGTGCTACAGAACTGCCCGTGGCCCATGGGCTGCCCTGGGAACAG
	INTRON 2 - 3	5143925	5144294			370	GTGAGCAGAATTGTGGTGGGGACAG..........TACCTGGCCTTTCTTTCAGCTACAG
3	EXON 3	5143827	5143924	2	1	98	AACCGTGGTGAGACCCTTGTACAAGGTGACGTACAAGACAGTGACGGCCCGAGAATGGAG GTGCTGCCCTGGACATTCAGGGGTGACCTGTGAGGAAG
	INTRON 3 - 4	5135432	5143826			8395	GTAGGACCTGGGATCTGGGCCTGGG..........TTAGCCCACTGTACCTCCATTGCAG
4	EXON 4	5135354	5135431	1	1	78	GCTCCCCTGGCCTCCTGGAGCCCACGTGGACGGACAGCGGCATGCGGCGGATGGCAGTGA GGCCCACAGCCCTCTCAG
	INTRON 4 - 5	5134411	5135353			943	GTGCGTCCTGTGGTGGCCTCTGGAG..........GTCCAGCCTTCCTCCCTGCCCACAG
5	EXON 5	5134349	5134410	1	0	62	GTTGTCTCAACTGCAGCAAAGTGTCTGAGCTGACAGAGAGGCTGAAGGCGCTGGAGGCCA AG
	INTRON 5 - 6	5132041	5134348			2308	GTGGGTGAGCAGCCCCCACTCTTGC..........CCTCTGTCTTCCTCTTCCTGCACAG
6	EXON 6	5131920	5132040	0	1	121	GTGGCGGTGCTGAGTGTGACAGAGCAGACAGTGCCCTCAGTCCCAGCCACCCCTGAGGAC TCTGCCCTGCTCTGGGGCTCCCCGGCTGCCCGGGGCAGCCCTGGAGATGGAAGCCTGCAG G
	INTRON 6 - 7	5131572	5131919			348	GTAAGGGATACAGCAGGGTACATAC..........TAAGGGCATGTTCTTTCCTCTGCAG
7	EXON 7	5131482	5131571	1	1	90	ATAGACTTGATTCTTGGGGGCTTCCTGGGCCCACAGGCCCCAAGGGAGGCACCGACAGCC AGAGCCCAGTGAGGATTAGAGGCCCGCCAG
	INTRON 7 - 8	5130779	5131481			703	GTGAGTGCACCCTGAGCGCCTCCTT..........CCACTAGTCCCTGTTCTTACTGCAG
8	EXON 8	5130632	5130778	1	1	147	GCCCACAGGGACCCCCAGGACGCCCTGGCCAAACAGGAGCTGCAGGCACCCCTGGAAAGA TGGGACCTCCAGGGCCTCCAGGTCCACCTGGACCCCCAGGGTCTCCAGCCCCTGTAGGGC CACCCTATGGCCAGGTCTCTCTGCATG
	INTRON 8 - 9	5129721	5130631			911	GTAAGTCCCCCTGGAATCCCAGTGG..........CACACTCACTGTCTGTCCCTCCCAG
9	EXON 9	5129622	5129720	1	1	99	GGGATCCACTGCTGTCTAATACCTTCACTGAGATGGGCAGCCACTGGCCCCAAGGACCCA CTGGGCCCCCAGGTCCTCCAGGCCCCCCAGGGCCCATGG
	INTRON 9 - 10	5129481	5129621			141	GTAAGTTGAGTCCAGGTGGGGGATG..........CCTGAAGACGTTGTGTTTTATTCAG
10	EXON 10	5129428	5129480	1	0	53	GTCCTCCTGGACTTCCTGGCCCCACGGGTGCCCCTGGGAGTCCTGGACACATG
	INTRON 10 - 11	5129072	5129427			356	GTAAGTCATTATCCAAGTTCTTCCA..........GCTGAGCCTCTGTCTTGTTGTTCAG
11	EXON 11	5129009	5129071	0	0	63	GGAATCCCAGGCCCTTCTGGACCCAAAGGAACCTCTGGCCACCCAGGAGAGAAGGGAGAG AGA
	INTRON 11 - 12	5128915	5129008			94	GTGAGTGAACACGTGGGGGATTCTG..........ATTCTTTTTCCCTTCTCTGATACAG
12	EXON 12	5128870	5128914	0	0	45	GGACTGCCTGGGGAACCTGGCCCCCAGGGTGTGATGGGGGTTCCG
	INTRON 12 - 13	5116925	5128869			11945	GTAAGTGATGCAGTGCTCTCCCATG..........TACTTCTGTCTCTGACTTCTTTCAG
13	EXON 13	5116880	5116924	0	0	45	GGAGAACCTGGCCCCAAAGGAGACCCTGGTGAGAAGAGCCACTGG
	INTRON 13 - 14	5110775	5116879			6105	GTAAGCTGCAGCCCTGCACCTGCCT..........CTGCATCTGTCTCTTTCCTCCACAG
14	EXON 14	5110690	5110774	0	1	85	GGGGAGGGGTTGCACCAACTACGCGAGGCTTTGAAGATTTTAGCTGAGAGGGTTTTAATC TTGGAAACAATGATTGGGCTCTATG
	INTRON 14 - 15	5106970	5110689			3720	GTGAGTAGAGACAGACAGACGGCCA..........CCTCTCTCCTTATTCCCTCCGGCAG
15	EXON 15	5106266	5106969	1	-	704	AACCAGACTTGGGATCCGGGGCAGGCCCTGATGGCACAGGTACCCCCAGCCTCCTTCGAG GCAAGAGGGGAGGACACCCAACCAACTACCCGATCATCACCCCCAGGAGACGCAGCGAGA GGAGCTGAGAGGCTGCAGGCTTCCTCCCCTAGCCTGGACCTGACCCGCTGCCTCCGGGAC TGCCAGGTCCTATTTATTAATACCCTCAGGGATCCCTTGGTCTTAGGGGTAGGCAGATCT CAGTGATGGCAGCCTATAACATGACAGACTAAACAGGGACTGGGCCTCAAAAAGTCAGGC CTCACTTGCACCCGGCCTGGTTGGTTCCCTCTGTGAAATGGGGTGAAAAGGCTTTGAATG GGGGGTGGACGGAGGTACAAGTCACGTCAGCTGCCTAAAGTTAGGACCTGGGACCGCCTG GCCCTGCAGATATGCAAGGATTGGGGCGGAAGTCTCAGTTCCCCTCCTGTAAAACCTTGG GGAGTCCTGTGTGCCCCTTGTTTTCTGGTGCTGAGTTCCCACCTGAGTCCAGGCTGCTTA ATCTAACTGAACGGTCGGTGCTTCTTATATCAGCTCTACCCCAGGCCCCTACTCCCATGT CCTATGTGGGAATGGGATGTGTACAAGGGACACCTACTCCAAGTGTCTGCTGCAAATGCC ACGAGTCAATATGTACAGGACAATAAACATCCCTGCTTGACCCT
	3' upstream sequence						ACTTCGCTTGGTCTCTATGTGCTGCCCAGGGCAGCCAGAAAGGGCCACCCAAGCCAAGGA TATGGGGGCAGGATCCTCCTTCAACAGCCACACATTCACTGTTGCTCACTCCTTCCTCCA TGATGCCAACACAGAGGAGCCAGACATGACAACTGACACTCAGGAGACCAGGTTGAAAAA CAAATCAGCTTTTATTCTTACAAAGTACCAGGGAAACATGTTGGGGCCTAGTCCTACCCC AGGGATGCAGTCAAGACCCCACCAAGCCCTCAGCAGACAAGGAAAGGACTATGAGGCCCC AGTGCCTGTGCAGTGGGCAGGGCTACTCCTTCCCTCAGTCACTAGGGCCTCAGTGTCCAC TATCCCTTCCACCAGCAGTGACACTGCCCCCTCTACACGCCCTGTAGCTGCCAAGGCCAC TGCAGCCTGCTCAGTGGGGAATCCCATGTGCTGTAGCTGCTGCAGCCTGTGAGGTAGGAC AAGGAAGAAATGTCAGGACAGCATGGCTCCCATAGCAGGAGGCCGCACCCCTGCCCACCC TGCCTTACCTTAGAGAAGACACAGAGGGCTTTGGCAGCCACAGAGAGCTCTGGGAACCCT GAACTGACACATCAAGAAGGGAGGCCTGGATCCCTTCCTGTAGCATCTGCTCGTCTAGGG CTGCCCACATCGTCGTTGCTGAAGCAAAGCTAGACCCAGCCCAGTCCAAGCCCCTCTCCG AGTTCTTCCATGTCAGCTGTCCAGGCCCCAGGCGTGGTGGGAGCTGAGCAGAGCCATCAC TGTGAGGCCAGGAGTCTGAGGAAGCCAGGTAAGGAGGTCTAGGGGTGGCAGGCCTGTAGG GACAGAGGTGGATGGCCTGGACTGCCAGCCACTGTCACAACTTCCACCATCCAACACTGA GCCCAACACCACCCTCACCTCACTCCAGCAGGATAAGTGACAGGCAGCTCACCCAGACTG CCCGGGGTGGGAAAGAGCCTCAGTGGCCAGCATCGGGCCA..........

Sequence Detail Report

Gene Symbol (Gene ID)	Emid1 (ENSMUSG00000034164)
Transcript ID	ENSMUST00000163299

		SNP Information
Strain :
Sequence Retrieve :
Exon translate : CDS Start ( 1 ) - End ( 443 ) -
Strand :	forward reverse
Show sequence :	nucleotide amino acid
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