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Target CDS Information

Gene Symbol (Gene ID) Pcmtd1 (ENSMUSG00000051285)
Cross Reference
EMBL AC102777, AC157797, AC171270, ...show all
GO GO:0003674, GO:0004719, GO:0005575, ...show all
goslim_goa GO:0003674, GO:0005575, GO:0006464, ...show all
MGI_trans_name Pcmtd1-006
OTTP OTTMUSP00000063588
OTTT OTTMUST00000113813
UCSC uc007agc.1
UniParc UPI000333537A
Uniprot/SPTREMBL S4R2K3
Vega_transcript OTTMUST00000113813, Pcmtd1-006
Vega_translation 178653, OTTMUSP00000063588
Definition protein_id:ENSMUSP00000138680
translation:
MKILLKVGGILVMPIEDQLTQIMRTGQNTWESKNILAVSFAPLVQPSKNDNGTPDSVGLP
PCAVRNLQDLARIYIRRTLRNFINDEM

Chromosome 1
Length
Position(start - end)
8587
7161010 - 7169598
Orient to Chromosome plus
Link Location : (1:7161010-7169598)
/

Detail Map


 

Report

Polymorphisms Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Pcmtd1 (ENSMUSG00000051285)
Transcript ID ENSMUST00000182114
Reports
substitution
cSNPs3
Insertion53
Deletion74
SNPs
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
Insertions
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
Deletions
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
coding sequence substitutions
premature termination by the nucleotide substitution0
synonymous num3
non-synonymous num0
synonymous substitutions 7169516 (p.Pro60Pro), 7169519 (p.Pro61Pro), 7169552 (p.Arg72Arg),
non-synonymous substitutions
B6 transcript
(ENSMUST00000182114)
MKILLKVGGILVMPIEDQLTQIMRTGQNTWESKNILAVSFAPLVQPSKNDNGTPDSVGLP
PCAVRNLQDLARIYIRRTLRNFINDEM
MSMv4 transcript
MKILLKVGGILVMPIEDQLTQIMRTGQNTWESKNILAVSFAPLVQPSKNDNGTPDSVGLP
PCAVRNLQDLARIYIRRTLRNFINDEM
homology100.00 (87 / 87)

Exon Detail Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Pcmtd1 (ENSMUSG00000051285)
Transcript ID ENSMUST00000182114
No. Exon / Intron Start End Start Phase End Phase Length Sequence
5' upstream sequence
..........AAGACTGTTATGTGATCCCATCCTGTCCAGGGGTGCTTTGGTTCTAGGAG
AGACACAAAGATAGGACTAAGGAATCCGGCCCACAGCCTCAGTCTAAGGGCTAAAAGCCC
ACCAAATCTAACTTCGTACTTGAGACATAAAGGTGAGCTGAAAGTCAGACCATCGCATAA
GTTAACTTTGTTCCAGTTTTCAAGTGATTGGAAGCTCTCATTTTACTATTCTGTTCTTAA
ACACTTTACACAAGGTTACTGTAGGTGACAGCAACCTAGGCCTCAAGACCTTTTGTTTTC
CTGATAGGGACTTGATGTATGTATGTAGTACAGGCAGACTTTGAGCATCCCAAGTGCTGG
GGTTACAAGCCAGTGCCACCACATCTGGAACGTGCATTTGGTTACAAATTACAGCATTGG
GAAAGCAGTGTCTTTTTATGTGCTGGAAACAAACAAACAAACAAAAAATACAGTCCCAAA
GTAGGAATCGACATGTTTACTGCGGAGGACTACAGAGGTAGATGCTCCCCCTTGCTTCTG
ACCCTCGCCACTTCTCAACAAGCACTCCTTCCCGACACCGACACAGGCAGGGGCTTCGGC
GTGGACCAAGAAGGCGTTAGCTGCGCCTGCACAGGGGGCGACGCATGCACCGCCGCCAGT
CATTGGGTGCGCGCCGGGTCTGCAAGCATCCTCTCCATCACCCGCTACAGAGACCCGCGG
AGAGGCTGGAGATGAAGTGGCCCCGTAGATCCAGTCGGCAAAACGCCGACCGGAGGCGGA
GCTGGGGACGGACTGAGTCACCAGACCCTGCGCTCCCGAGCTACGCAGCACACAAACAAA
ACAGCGACAGAATAGGAGGAGCCCCAGCTCTCGCGGCATCCGCGGGAGCTGCCAGCCGCT
TGGGCAAGCCTCGCGTTGTTTGGTTAAGGGGCAGGGCGTTCAGCGAGAGGGCGGAGTCCA
ACTCAGCTGAGGGTGGGGGTGTTCCCAGGCCACGTTGATTGGCATCTTTC
1 EXON 1 7088930 7089216 - - 287
TTCGGAGGGCGCCCCGCGCACGCGCAGCTCCCAGGAGGCGGTGGCGACTAGGGCAGTCCA
GCTGCCCGGGTCCCGGGTTGCGGGTCGGGCTCCGCCCTCCCGCGTCGGCGCTGGCGGACG
CTGTGCCGGGCCAGTCGGCTGTCTCTGCGGCGCTCCGCCCGCCGCCGGTCCGCCGCTGTT
TTGGCCTGGAGGGCTCCCGCCTACGCAGGCTCGTGACGCGGGGGCTGGGACGGGGCTTCA
GGGACTGAGCGGGCGCTGCCGCTGTGTGAGCGTCTTCTGCGCCTTCG
INTRON 1 - 2 7089217 7147636 58420
GTAAGTGCGGTCCGCGTCCGCTGCT..........GTAAAAAATGCTTATATAATTACAG
2 EXON 2 7147637 7147739 - - 103
GTCCTTTTGGAATAAATCATGGGATTGAACTTCATTCAGATGTGGTGGAGTATGCCAAGG
AAAAACTGGAGAGCTTCATCAAAAATAGTGATAGCTTTGATAA
INTRON 2 - 3 7147740 7160891 13152
GTAAGTATTTATACCTGTAGTTTGG..........TTAAAATGTTTGTTTTCCCACATAG
3 EXON 3 7160892 7161063 - 0 172
ATTTGAATTCTGTGAACCTGCATTTGTGGTGGGTAATTGCCTTCAGATAGCTTCTGACAG
TCATCAGTATGATCGAATTTACTGTGGAGCTGGAGTCCAGAAAGACCACGAAAACTACAT
GAAGATCTTACTCAAAGTTGGGGGCATATTGGTCATGCCTATAGAGGATCAG
INTRON 3 - 4 7161064 7163247 2184
GTACTTTTACTGTCCTGAATTTGTC..........TTCTTTCTTGTTTCACTCCAAATAG
4 EXON 4 7163248 7163371 0 1 124
TTGACACAGATTATGCGGACTGGACAAAACACTTGGGAAAGTAAAAATATCCTTGCGGTT
TCCTTTGCACCACTAGTACAGCCTAGTAAGAATGATAATGGCACACCGGACTCTGTGGGG
CTCC
INTRON 4 - 5 7163372 7169514 6143
GTAAGTAGATATTTGAACCCAGAAT..........GTTTCTTTTTTGTGTTTGTTTGTAG
5 EXON 5 7169515 7169598 1 - 84
CCCCGTGTGCTGTCAGGAATCTCCAAGACTTGGCTCGTATTTACATTCGACGTACACTTA
GAAACTTCATAAATGATGAGATGC
3' upstream sequence
AGGCCAAGGGGATTCCACAAAGGGCTCCACCCAAGAGGAAAAGAAAGAGAGTCAAACAGA
GAATTAATACTTACGTATTTGTGGGTAATCAGCTTATCCCTCAGCCTCTAGACAGTGAAG
AGGATGAAAAAATGGAAGAAGACAGCAAAGAAGAAGAGGAGAAAGAACACAGCGAAGCCA
TGAAGCGCGAGGAACCACCTCAGAACCTACTGAGGGAAAAGATAATGAAGCTGCCACTCC
CAGAGTCTTTAAAGGCTTACTTGACGTATTTTCGAGACAAATAACTTAAACAAGGAAGAA
TGCCTACTGATAAACTCCCTTACTCTTGTAAATGTACTATTAATTAGGACTTAGAGAATT
ACTTCATTAGAATGAATTATTGCAGAAAAAAGTCTAAGTTATTTCTTTTAATAACAGAAA
TGATGTATTCAGTGATTTAAAAGAGTCTCTTTCCTAAGATCTATTTTTCTTAAATCTTGA
AGAATTACTGTTTTGATCTCAAAGCGGGATGGGTCAATAGTAAGAACTTTGTATACAGTA
CTCTTTCTGGTTCTTCATGGATTTGTAGTGTTGGCAATTGAATTTCATTCTATAAGAGGT
TGATACACATATTGTCACACATATAGGCTTATTTAAATTGCCGTTTGCATTTCTGTTACT
TGAGCTTGCTTATCTAATAAGGAAAGCAAATGCTTGTAGACCTACCTACCTTACTTATGT
TCTAGACATGTCCCGGGCAACGTATGAGTGCAATACTAATTCAAGATACTGAGTAATTTA
GCTTTAAAAACCACAGACTTCATGAAATTTTACAGACCCGAAACTTAAGCTTTTGAATCT
ATTGCCAAAAGGCATGGGGAAAATTTCTGCTTCTCTCATAGAGATTTTTAAGAGCTAGTG
AATGTTAAAGTAGGAAGTGGCTACTTGACACAACTAGTTTGTATGGGCCCTTTGTGTTCT
CAGTATTTAAAGATAATGAGGTTATCTTAACTATAGAATT..........

Sequence Detail Report

Gene Symbol (Gene ID) Pcmtd1 (ENSMUSG00000051285)
Transcript ID ENSMUST00000182114
SNP Information
Strain :
Sequence Retrieve :
Exon translate :
CDS Start ( 1 ) - End ( 87 )
-
Strand : forward reverse
Show sequence : nucleotide amino acid
Color information