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Target CDS Information

Gene Symbol (Gene ID) Dek (ENSMUSG00000021377)
Cross Reference
CCDS CCDS26490.1
EMBL AK033451, BC048844, BC055451
Fantom 9030207I12
GO GO:0003677, GO:0005634, GO:0005634, ...show all
goslim_goa GO:0003674, GO:0003677, GO:0003723, ...show all
MGI_trans_name Dek-001
OTTP OTTMUSP00000029851
OTTT OTTMUST00000061016
protein_id AAH48844.1, AAH55451.1, BAC28296.1
RefSeq_mRNA NM_025900.2
RefSeq_peptide NP_080176
UCSC uc007qhw.2
UniParc UPI00001B62C8
Uniprot/SWISSPROT Q7TNV0
Vega_transcript Dek-001, OTTMUST00000061016
Vega_translation 214421, OTTMUSP00000029851
Definition protein_id:ENSMUSP00000021807
translation:
MSAAAAPAAEGEDAPVPPSSEKEPEMPGPREESEEEEEDDEDDDEEDEEEEKEKSLIVEG
KREKKKVERLTMQVSSLQREPFTVTQGKGQKLCEIERIHFFLSKKKPDELRNLHKLLYNR
PGTVSSLKKNVGQFSGFPFEKGSTQYKKKEEMLKKFRNAMLKSICEVLDLERSGVNSELV
KRILNFLMHPKPSGKPLPKSKKSSSKGSKKERNSSGTTRKSKQTKCPEILSDESSSDEDE
KKNKEESSEDEEKESEEEQPPKKTSKKEKAKQKATAKSKKSVKSANVKKADSSTTKKNQK
SSKKESESEDSSDDEPLIKKLKKPPTDEELKETVKKLLADANLEEVTMKQICKEVYENYP
AYDLTERKDFIKTTVKELIS

Chromosome 13
Length
Position(start - end)
19659
47086068 - 47105728
Orient to Chromosome minus
Link Location : (13:47086068-47105728)
/

Detail Map


 

Report

Polymorphisms Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Dek (ENSMUSG00000021377)
Transcript ID ENSMUST00000021807
Reports
substitution
cSNPs6
Insertion29
Deletion31
SNPs
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
Insertions
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
Deletions
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
coding sequence substitutions
premature termination by the nucleotide substitution0
synonymous num5
non-synonymous num1
synonymous substitutions 47098185 (p.Ser248Ser), 47098272 (p.Arg219Arg), 47098278 (p.Thr217Thr), 47105600 (p.Asp43Asp), 47105657 (p.Pro24Pro),
non-synonymous substitutions 47088563 (p.Ala276Val),
B6 transcript
(ENSMUST00000021807)
MSAAAAPAAEGEDAPVPPSSEKEPEMPGPREESEEEEEDDEDDDEEDEEEEKEKSLIVEG
KREKKKVERLTMQVSSLQREPFTVTQGKGQKLCEIERIHFFLSKKKPDELRNLHKLLYNR
PGTVSSLKKNVGQFSGFPFEKGSTQYKKKEEMLKKFRNAMLKSICEVLDLERSGVNSELV
KRILNFLMHPKPSGKPLPKSKKSSSKGSKKERNSSGTTRKSKQTKCPEILSDESSSDEDE
KKNKEESSEDEEKESEEEQPPKKTSKKEKAKQKATAKSKKSVKSANVKKADSSTTKKNQK
SSKKESESEDSSDDEPLIKKLKKPPTDEELKETVKKLLADANLEEVTMKQICKEVYENYP
AYDLTERKDFIKTTVKELIS*
MSMv4 transcript
MSAAAAPAAEGEDAPVPPSSEKEPEMPGPREESEEEEEDDEDDDEEDEEEEKEKSLIVEG
KREKKKVERLTMQVSSLQREPFTVTQGKGQKLCEIERIHFFLSKKKPDELRNLHKLLYNR
PGTVSSLKKNVGQFSGFPFEKGSTQYKKKEEMLKKFRNAMLKSICEVLDLERSGVNSELV
KRILNFLMHPKPSGKPLPKSKKSSSKGSKKERNSSGTTRKSKQTKCPEILSDESSSDEDE
KKNKEESSEDEEKESEEEQPPKKTSKKEKAKQKATVKSKKSVKSANVKKADSSTTKKNQK
SSKKESESEDSSDDEPLIKKLKKPPTDEELKETVKKLLADANLEEVTMKQICKEVYENYP
AYDLTERKDFIKTTVKELIS*
homology99.74 (381 / 381)

Exon Detail Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Dek (ENSMUSG00000021377)
Transcript ID ENSMUST00000021807
No. Exon / Intron Start End Start Phase End Phase Length Sequence
5' upstream sequence
..........AAACTAAAAAACAAAGAAAGGTGAGCAGAATCAGTAGAATGGGAGATGGC
TTAAGATCTGAAAGCAAAAATAGCAGGACTTTTCGTATGTTTACAAAAGGGGCACAGAAG
AAAATAAAGTCTAACTTTTGTCCCTCAACTTGGAGACTATTATGGCAAATGAAACCAATC
ATATTTCCACCAGGTTGACTGGATAAAAAAAAGGGAGGGAGGGAGATTATTCTCAGGGTA
GGGAAAAAATGAAGACAATCACATAGGAGAGCACGTAAGGAAATGTTGCTTTTAAACTGT
GGACTCTAAAAGGTATCAGAGGGCTTGCCTAGAATTCTTGACAGGAGAGTGTGGCTGGAC
AAATACCGTATCTGCATTATAGGGGAGACCAAGGGGGCTAGAGAAAGGAAGAGGGTGAAT
CTGTCTAACATTCACCGATTTGAAACCTATTTATGTCGCTGGTGGTGTGAGCACTTAACG
TGGTGGGTCCCTGTCACGGTGCAGTGTACCGGCGACGGGAAGCCTCGCAAGTAGGTCTCA
TTTGGAAGCCTTCATCTCGAACGACCCCTCGGAAACAAACGCGGTGGCTCCGAATCAACC
CCGTCTGCGGGGTGATCGCCGCGTGAAGTCGAGTCGAGAAAGACTTCGGCGGATCCCTCA
ACTTCGTCACCTCCAGACGCTCCCCGGCTCCGCGGCCCAGGACGGCCGGTCATTTTTCTC
CCGGGATCGGGAGGCTGGAAGCTCGCAGGCCCCCTAGCGTCCAACCGTTCAGCGCGGAGG
CCCCGGCTCGCGCCCGCCCACCACCCCGTGCACCCACCCAGCCACCCGCCGGACGCCGCG
ACCCGGGTCCTCCCGCGAACCGCAGACCCCCCGAGACCCCGCCCGGGCAGCCCGCGAGAG
ACGCCGCCGCCCCGCCTCCCGCCCGCCCTCCCGCGCGCGCCAACTCCCAGCGCCGCGCGC
TGATTGGCCGGCGCCTTCCCGCTCTGCTTCCCGAACCGCCATTTTGAAAA
1 EXON 1 47106073 47106190 - - 118
TCTTGTTGATTCTGAGGAGCGGGGAGAGAGAGAGCGCGAGAGAGAGCGAGCGCGCGGCGC
GAGGACCTCGGCCCCGAGCGACTTCTACACAGCGGCGGCCTTCTCGTGCGCACCCGCG
INTRON 1 - 2 47105738 47106072 335
GTGAGGACGGCGGCGGGGAGGCGCC..........CGTGCGGCTTCCTCCCCGCCCGCAG
2 EXON 2 47105572 47105737 - 1 166
GCCCCCAGCATGTCGGCGGCGGCGGCCCCCGCTGCGGAGGGAGAGGACGCCCCCGTGCCG
CCCTCATCCGAGAAGGAACCGGAGATGCCGGGTCCCAGGGAAGAGAGTGAGGAGGAGGAG
GAGGATGACGAAGACGACGATGAAGAGGACGAGGAGGAAGAAAAAG
INTRON 2 - 3 47102075 47105571 3497
GTGGGTGGGCAGGGATACGCATCCC..........ATATATAAGAATTATTAATTTCTAG
3 EXON 3 47101973 47102074 1 1 102
AAAAGAGTCTTATCGTGGAAGGCAAGAGAGAGAAGAAGAAAGTAGAGAGACTGACGATGC
AAGTGTCTTCCTTACAGAGAGAGCCATTTACAGTGACACAAG
INTRON 3 - 4 47101733 47101972 240
GTGAGTGCATATTGCTTTTATGGGA..........TTAATTGTGATATTTTGCTTTTCAG
4 EXON 4 47101623 47101732 1 0 110
GGAAGGGTCAGAAACTTTGTGAAATTGAAAGGATACATTTCTTTCTGAGTAAGAAAAAAC
CAGATGAACTTAGAAATCTACACAAACTGCTTTACAACAGGCCGGGCACA
INTRON 4 - 5 47100269 47101622 1354
GTAAGACATTTGATAAACATCTCTA..........TAGCATTAACAATAAACATTTTCAG
5 EXON 5 47100174 47100268 0 2 95
GTGTCCTCGTTGAAGAAGAACGTGGGTCAGTTCAGTGGCTTTCCATTCGAAAAAGGCAGT
ACCCAGTATAAAAAGAAGGAAGAAATGTTGAAAAA
INTRON 5 - 6 47099464 47100173 710
GTAAGTTACTTTTGTAACTACTGTG..........CCTTGTTCCCTGCTTCCTGTTTCAG
6 EXON 6 47099343 47099463 2 0 121
GTTTCGAAATGCCATGTTAAAGAGCATCTGTGAGGTTCTTGATTTAGAGAGGTCAGGCGT
GAACAGCGAACTCGTGAAGAGGATCTTGAACTTCTTAATGCATCCAAAGCCTTCTGGCAA
A
INTRON 6 - 7 47098344 47099342 999
GTAAGGGCCACTCTTTACCTTCCAA..........GTCAATGAATTTTTATATACTGCAG
7 EXON 7 47098155 47098343 0 0 189
CCATTACCAAAATCCAAAAAATCTTCCAGCAAAGGTAGTAAAAAGGAACGGAACAGTTCT
GGAACGACAAGAAAGTCAAAGCAAACTAAATGCCCTGAAATTCTGTCAGATGAGTCTAGT
AGTGATGAAGATGAGAAGAAAAATAAGGAAGAGTCTTCAGAAGATGAAGAGAAAGAAAGT
GAAGAGGAG
INTRON 7 - 8 47088616 47098154 9539
GTAAAGTGTTTTAAGCTGTTGTTTT..........TGCTTTGCTTTGCTTTCCTTTCTAG
8 EXON 8 47088477 47088615 0 1 139
CAACCACCAAAAAAGACATCTAAAAAAGAAAAAGCAAAACAGAAAGCTACTGTTAAAAGT
AAAAAATCTGTGAAGAGTGCTAATGTTAAGAAGGCAGACAGCAGTACCACCAAGAAGAAT
CAAAAAAGTTCCAAAAAAG
INTRON 8 - 9 47088174 47088476 303
GTACATTAGAAATGATGACAGCAAC..........TCACACCCAGTATCCTAACTTTTAG
9 EXON 9 47088025 47088173 1 0 149
AGTCTGAATCTGAAGACAGTTCTGATGATGAACCCTTAATTAAAAAATTGAAAAAGCCAC
CTACAGATGAAGAGCTAAAGGAAACAGTGAAGAAATTACTGGCTGATGCTAACTTGGAAG
AAGTCACAATGAAGCAGATTTGCAAAGAG
INTRON 9 - 10 47086494 47088024 1531
GTAACTGGGCGTGTGTATGTGTGTG..........TTTAACTATGCTTTTATGTTTTTAG
10 EXON 10 47086425 47086493 0 0 69
GTATATGAAAATTATCCTGCTTATGATTTGACTGAGAGGAAAGATTTCATTAAAACAACT
GTAAAAGAG
INTRON 10 - 11 47086080 47086424 345
GTAAATATTTCTTTCCTATATGATC..........AAAGCAGTTTTCTTTTTCATTGCAG
11 EXON 11 47084782 47086079 0 - 1298
CTAATTTCTTGAGAAGCGGACAGATGGCTTGTTCTCAGATTTGAAGATCTGATTTTATAC
CAGCAAAGAGAATGTATTCTTTTTTAAGGCTATTGTTGGTAGAACTTGCTGCTGACTCTT
TTGCGTGTTAACATATTTGAGCTTGTTTTAAATTGTATTTTCTTGCAGTTTTCAGTTTAA
ATCTTGCATGGCAGTAATCGTTCCTTGCTTTTTATAGTTGTACATTTTGGGTTTCTTTAT
TGTAAGGTCACAGATTCCTGAACTATTGTGAATTTTAGTGAACTTAATGTTAGCTTGCTT
AAGACATTACTTTTAATCAAAGCAAAAACTATTATAACCAGCATTTATATGTGCAAAGAC
TATTGCAGTATTTAGTATACAAAATATTTTGAATACGCCTTCTGTCAGTGTGAAAACATA
GCGGCAGTCTGTTCATCATAGGGCACAGCTGTTCAGATGACCGAGTCGGAACCTTTTCTG
CATGTGTATATATGTCAAGTTGTTGGCATGACAGAAGTGACAGATGTTATTTTTGTATTT
TTAAAAACCAATTTGTTGTATATAATTTTTTTATTTCTTTTGTGCAAATCAATTTTTTAA
ACTCTTGTGTCTTTAAACTTGTAACTAAATGTCAGTGTTCATCCAGGCAGCAGTGACAGC
GCAGAGTTCAGTGGTGATGGCACTGAGGACTGTCTAGTTCTGCTTTGCCCTCAAAGTGTC
ATCAATGTGGTTGTGTTAACTTTAAGTGTCATAGAAATTTTATAATGAGGATAAACACAT
CACAGCTTCAAAAACTGGGAAGGCGTGAGCACACATGGATTTATATATAAGTGAACTGAC
AGTAGTAAACTGTTGACCATATAAATATATTAGATACAGGAAACCTGGTTACCTTCATAA
TTATGATTAAAAGCATCAAGTGTAACCAGAGTTGGTGTGGACAACATAGGTATCTCTGAA
AGTATTTATCAAAAACCATACATTAATATTGAAGTATTACAGAATCAAGGCTGTTTGATT
TTTAAAGTGATGAAACATGGACTGCCCCTTAAATTTTGACTGTCCTAAAAACCTATTTCT
GATTTATAATATGCTGCCTGATAAAGTGACACTAGATGTACCAGCTGAGTGTTTAATCTT
CCCATCACAGATCAGATTTGAGCATTAACAGGTATTTTCACATACTTGACTTCAATATGC
TTAAAGTGAGGAACAAGCAATTAAGTGGGGACTAAAAATATTGGCCTTTAAGCAATTTGT
CATAAATCTTCACAATAAAGAATAAATCAATGTTTTAA
3' upstream sequence
GTGTCTTGTATTTAATCTTTGTCTGCTTAAGTGTTATTTCTCTCCTACTCTATCCTATGA
CAATAAATGACCATTTTGACACAGAATTAGTTTTGTATGCTGACCACTTACTATTAAGGA
AATAGGGTAGCAAATGCTTATGACCAAGAAGCTTAAAGGACTGGAAAGGAGGTTGACACA
GTGATGCTATGACCATTTATTACGGGTATTTGCAAAAGTCTACTTATTAAGCAGTTTTAC
ATAACCAATTATTCATGATATGTAGTTATTAAATCAAAGTATACTTGTGCTCATTAACAA
AAGTCTCAGAGATTGGAGAACATAACTCAAAGTACCATAGTTCCTTTAGAACAAATATGA
AACTAAGTATGTCACTCAGTGGGAGAAAATTACTCACTTATACTTGAAATAGCACACAAA
GCTCAAGTGCCTAGAAACTAACTGACTTAGAAGGGCCATTTAACATTGTGCACTTACCGT
TTCACACATGCTAAACATTTTAATTACTTACACTTGAAAGCAGAATACTTCCCTTATCAG
TACCAATGAGTCTCAACAAATAACCTCTAAGTACAGTGAATAATGAACTTTTAAATATGT
TGCCATTGGCTTTATATTGTACTTTGACAGGGGAGAAGAGTGTATCTAGACTGTCTAAAG
TACACTTCACTGTACATTCTTTGTATAAGATCTTTTCTTAAGCTAAATTTGAATTTCAGA
AATACCTAATATTTCAAAAAGTGTCTGTAAAGTCCTTTGTAGCTCCCTTTTAAAAGCAGA
CCAATATAATTCAAAGAAGAATTGTTTAAAGACTTTTTAAAACAAAAGTATATTTCTAGT
CTATCAACTGAAGTTTCTTGGCAGAATAGGCATCCCAAAGACCCTGAAAACCCATGCTTA
TTAAACAGTCTTTTCAGTGGAAGAGTAAGTTTTGCCACGTTCAGACTTTTAACATATGGC
TTATAAAGTAATATCCTGTGTATGTACTAAGATGATTGAG..........

Sequence Detail Report

Gene Symbol (Gene ID) Dek (ENSMUSG00000021377)
Transcript ID ENSMUST00000021807
SNP Information
Strain :
Sequence Retrieve :
Exon translate :
CDS Start ( 1 ) - End ( 381 )
-
Strand : forward reverse
Show sequence : nucleotide amino acid
Color information