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Target CDS Information

Gene Symbol (Gene ID) Tspan17 (ENSMUSG00000025875)
Cross Reference
CCDS CCDS26536.1
EMBL AC160106, AC162526, AK171691, ...show all
Fantom F830004H06
GO GO:0016021, GO:0019899, GO:0072594
goslim_goa GO:0003674, GO:0005575, GO:0008150, ...show all
MGI_trans_name Tspan17-001
OTTP OTTMUSP00000043443
OTTT OTTMUST00000081270
protein_id BAE42615.1, EDL01070.1
RefSeq_mRNA NM_028841.3
RefSeq_peptide NP_083117
UCSC uc007qpl.2
UniParc UPI000002271A
Uniprot/SPTREMBL Q3TAQ3
Vega_transcript OTTMUST00000081270, Tspan17-001
Vega_translation 214534, OTTMUSP00000043443
Definition protein_id:ENSMUSP00000026993
translation:
MPGKHQQFQDPEVGCCGKYFLFGFNIVFWVLGALFLAIGLWAWGEKGVLSNISALTDLGG
LDPVWLFVVVGGVMSVLGFAGCIGALRENTFLLKFFSVFLGLIFFLELAAGILAFVFKDW
IRDQLNLFINNNVKAYRDDLDLQNLIDFAQEYWSCCGARGPNDWNLNIYFNCTDLNPSRE
RCGVPFSCCVRDPAEDVLNTQCGYDIRLKLELEQQGSIYTKGCVGQFEKWLQDNLIVVAG
VLVGIALLQIFGLCLAQNLVSDIKAVKANW

Chromosome 13
Length
Position(start - end)
6626
54789595 - 54796222
Orient to Chromosome plus
Link Location : (13:54789595-54796222)
/

Detail Map


 

Report

Polymorphisms Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Tspan17 (ENSMUSG00000025875)
Transcript ID ENSMUST00000026993
Reports
substitution
cSNPs2
Insertion3
Deletion15
SNPs
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
Insertions
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
Deletions
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
coding sequence substitutions
premature termination by the nucleotide substitution0
synonymous num2
non-synonymous num0
synonymous substitutions 54792830 (p.Leu77Leu), 54793365 (p.Tyr152Tyr),
non-synonymous substitutions
B6 transcript
(ENSMUST00000026993)
MPGKHQQFQDPEVGCCGKYFLFGFNIVFWVLGALFLAIGLWAWGEKGVLSNISALTDLGG
LDPVWLFVVVGGVMSVLGFAGCIGALRENTFLLKFFSVFLGLIFFLELAAGILAFVFKDW
IRDQLNLFINNNVKAYRDDLDLQNLIDFAQEYWSCCGARGPNDWNLNIYFNCTDLNPSRE
RCGVPFSCCVRDPAEDVLNTQCGYDIRLKLELEQQGSIYTKGCVGQFEKWLQDNLIVVAG
VLVGIALLQIFGLCLAQNLVSDIKAVKANW*
MSMv4 transcript
MPGKHQQFQDPEVGCCGKYFLFGFNIVFWVLGALFLAIGLWAWGEKGVLSNISALTDLGG
LDPVWLFVVVGGVMSVLGFAGCIGALRENTFLLKFFSVFLGLIFFLELAAGILAFVFKDW
IRDQLNLFINNNVKAYRDDLDLQNLIDFAQEYWSCCGARGPNDWNLNIYFNCTDLNPSRE
RCGVPFSCCVRDPAEDVLNTQCGYDIRLKLELEQQGSIYTKGCVGQFEKWLQDNLIVVAG
VLVGIALLQIFGLCLAQNLVSDIKAVKANW*
homology100.00 (271 / 271)

Exon Detail Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Tspan17 (ENSMUSG00000025875)
Transcript ID ENSMUST00000026993
No. Exon / Intron Start End Start Phase End Phase Length Sequence
5' upstream sequence
..........CGTGGTCTTGTTAGGAGGGATTCACTTGATGCTGATGATGCTTAAGGCCC
TTTCTGTATCTAAATAAACACTTCTGGAACAAACTTGGAATCTAAATATTTAAGATCAGA
CGTACCTAAACCTGCATCTGCTCTGTCCTGTTTTGCATCAGAAGGACTCTGGTGAGTCCC
AGGTATCAAGGCAGTCAAGTAGGTATGGGACAGGGCGACCATAGGAATAGGCAAAACAGA
ACAGGCGTGGCATGGCACGCCAGCCTGTTTGTATTCAACTACACTGTGTGTGAATGCATG
GCACTGTTCATTGGTCCCACTATTCCCAACCACTTATCCCTGGGGAGTGGACTCCTCTGG
TTCTTGAATCTTAGACTGGAGATCCAAGGTAATTATTCACACTTGGCTCACCAGCTTTGC
CAGTTGGCTCATCTGGGGCCTCTGGAGGACTTGGGGAACTTGAGAGAAGCTAACTGGAGG
ACGGACTTAGAGAGGAGATGGGGACTCTTCAGAGGTGGGGGTTGCAAGGGGTTGAGTGTG
ACTGGGGTGTAGCCAAAGCCTGGCCCAGAGGCAGGGTCTTGGGGAGAAGTGAGGCCTGTG
GACCATAAAAAAAAAAAAAAGACCGATGTCTTGGGCGTGGCTCCAAGAAGGCCGACTGTG
GCTCAGAACTGAGGCTGAGTAGGGCGGAGCTCCAGGAGGACTGAGGCCGGTTGGAGGCGG
GGTTTGGGGCTCATCAGAGGCGGGACCCGGTTTAGAGGCGGAGCTCGAGAACAGAAGTTA
GCTAGGGCAGAGCCTTGGGCGGGGCGTAGGCGGGACTGCGGGAGGACAGCGGCTAGGCAT
GGGCGGAGCCTGAGAGGATTAAGCCCGGCTGGGGGCGGAGTCGTGGTTATGGGCGGGGCC
CGTGAGGACTGAACTTGACTGGGACGGGGTCGTGGGCGGGGCTCCAAGAAGACCGAGCCT
TGCTGGGGCGGGGTGTGGACTGACACTGTGGGCGGGGCCGGAGCGCTGTT
1 EXON 1 54789377 54789681 - 0 305
GGAGGGCGGGGTCGGATGAGGGCACCGCACTCCGGGTGTGGCTGTCCGAGCGCCGTGGGC
GGTGCCACAGCGGGCGGGGCAGCCGGTGAGCTGTGTGGCTTTGACCATGAAGCCGCAGCC
ACCGGGCTAGGCCCGGGGCTGCTCCAGGCCTGGGCGGCCCGCAGAGGGCTGGGCCGGTCA
CCGGCTCGGGTTCCCGGGACGGCAGGTGGCCGCTCACCATGCCCGGCAAGCACCAGCAAT
TCCAGGACCCTGAGGTCGGCTGCTGCGGGAAATACTTCCTGTTTGGCTTCAACATTGTCT
TCTGG
INTRON 1 - 2 54789682 54792608 2927
GTGAGCGCGAGTCCGCTTCTCGCTC..........CCCTGAACTCTCCCTGCTGTTGTAG
2 EXON 2 54792609 54792659 0 0 51
GTGCTGGGAGCCCTGTTCCTGGCCATTGGCCTCTGGGCCTGGGGTGAGAAG
INTRON 2 - 3 54792660 54792739 80
GTAAGAGGGAGGGGCTGCCCAGGGG..........CACACTTGTCTGCTCCCCGGTGCAG
3 EXON 3 54792740 54792886 0 0 147
GGCGTTCTCTCCAACATCTCGGCGCTGACAGATCTGGGCGGTCTTGACCCCGTGTGGCTG
TTTGTGGTGGTGGGGGGAGTCATGTCAGTGCTGGGCTTCGCCGGCTGCATTGGGGCCCTC
CGGGAAAACACCTTCCTGCTCAAGTTC
INTRON 3 - 4 54792887 54793194 308
GTGAGTCTTTCTCTAAGTCTCTCTC..........CATCATCTGTGTGCCCCCAACCCAG
4 EXON 4 54793195 54793365 0 0 171
TTCTCTGTGTTCCTCGGCCTCATCTTCTTCCTGGAGCTGGCCGCGGGGATCCTGGCCTTC
GTCTTCAAGGATTGGATCCGAGACCAACTTAATCTCTTCATCAACAACAATGTCAAAGCC
TACCGGGATGATCTCGACCTTCAGAACCTTATCGACTTTGCTCAGGAATAT
INTRON 4 - 5 54793366 54795052 1687
GTGAGTATGGGCCTCATGTGTGTGA..........ACTCTGGACTCTTCTCTCACCCTAG
5 EXON 5 54795053 54795178 0 0 126
TGGTCTTGCTGTGGTGCCCGAGGGCCCAATGACTGGAACCTCAATATCTACTTCAACTGC
ACTGACTTGAACCCAAGCCGTGAGCGCTGTGGGGTGCCCTTTTCCTGCTGTGTTAGGGAC
CCAGCG
INTRON 5 - 6 54795179 54795410 232
GTGAGTGGGCCCTGGGAGGAGGGAG..........TTGCTAATGGCCTGTCTCCCCTCAG
6 EXON 6 54795411 54795458 0 0 48
GAAGATGTCCTCAATACCCAGTGTGGCTATGACATCCGACTCAAACTG
INTRON 6 - 7 54795459 54795965 507
GTGAGAAGGGTGGGGACAGGGTTGA..........CGAGCTTGGTCTCGTGTCTCCTCAG
7 EXON 7 54795966 54796082 0 0 117
GAGCTCGAGCAGCAGGGCTCCATCTACACCAAAGGCTGTGTGGGCCAGTTTGAGAAGTGG
CTACAAGACAACCTGATCGTGGTGGCCGGGGTCTTGGTGGGGATCGCCCTCCTCCAG
INTRON 7 - 8 54796083 54796156 74
GTACAGCCTTGGCTTGCCCACCCTC..........TCCTCACCTGCTCTCTGTCTTGCAG
8 EXON 8 54796157 54796776 0 - 620
ATATTTGGCCTCTGCTTGGCCCAGAACCTCGTGAGTGACATCAAGGCGGTGAAGGCCAAC
TGGTGAGGCTGCCAGGGGTGATGGCCATGTGCCTGGCCCGTGGGGCTCTAGTGGGGGCCT
CCCAGGACACTCTGCCTCGCTCACAATGGCAAGGCCTGTGGGATGTCTGTTACGACCTGA
GCCGGAGGTTTTGTGACCTTGGTGCTCATTACCCACTGAGGAAACCATTGGGGACTAGAC
TGGGGCTGTTTGCCACAGAGCTCTGTGTCGGGGGTGTGTACCTGTGTGTGTGCATGCACA
CTCGTAAGTGCACCTGGAGTCTCTACCCTGCTGCTGTGAGGTGGTGGCCCTTCCAGAGCT
CGTGGGGGGGGGGCAGATGGAGGGTAGGGCAGGCACCTGTGTCCCCTGGTCTACTGTGGG
ATGTATCTGTGTGTGGCTTAGGAGCCTGCTGTCTCAGACCTCTCCATACTCACCATGACT
TTGAGCCTGCCTGGAGCTTGTCTTGGCCTCAGTGTCACAGCCTCTGAAATGGGTCCAAGA
ATTCTCTCTCTCGCTTGCCTCTCAGGATCACACTTGGCGATGGCTACAAACGACTCAATA
AACAACACTTTGAAAAACAG
3' upstream sequence
TGGTGGTTTATGTTCACCGTCTTCGAAGGTTCTGTTGGCAGCGTGGCCTCTACAGAGCTC
TCCAGTGAGGAGGACCCTGGCCTGAATCCAACCAAGGCCTCTTAGGCCTGGGTAGACTAT
GCATTTGAGACAGCCTTTCAAACGGGTATATTGCCTTAAAGGTCACATCTCCTGTTCCCC
CTGGGCAATGGCTGTGTCATCTACAGTGGGACACAGAGGCAGCTCCCCTGGTCTGTTCTA
TGTACCTGACCGCTAGTATCTGAGAGTTGACCTTTCCAACCTCTGTAGGTTACTCCTGGC
ATACACCTCAATGCTGTTATGTCTCAGCCTCAAGAAAGGCATAAAGGAGCCGGGCGTTAG
TGGCGCTCGCCTTTAATCCCAGCACTGGGGAGGCAGAGGCAGAGGCAGAGGCAGGCGGAT
TTCTGAGTTCGAGGCCAGCCTGGTCTACAAAGTGAGTTCCAGGACAGCCAGGATTACACA
GAGAAACCCTGTCTCGAAAAACCAAAAAAAAAAAAAAAAAAAACATAAAGATCTGAAGAA
CGGGGAACTGGAGATCACCCCTAAGAGGGTACAGCTGGTGGGTCCCAGGTGTGCCTGAGG
TGGGTGTCAGAATGCCCATGAGAGTGGCTGAGTGCTGGACAATGGCAAGAGGACTACTCA
GTGAATGCCTGGGATCCATGAGGGAAATCCGTTTTGAGATCCGTCAATAGTTGGTTTAAA
AACTTCCACACCTGCAGTTCTGCATTGTGGCCACTAGAGGGAACATGGGTACCACATTCT
CTGCTGCTGATTTTCCTTCACCTCCGTACCTTCCAGCTTACCTGGGGTGGCTTGCAAACT
TGTAAAGAAGCAAAGCAGCTCAGGCTTGGACAATCTAGCTGCCCAGAGGGGTGGTCTGTG
TCAAATGACCCTTCCCTGCTCTGGGCAAATGGAGGGATGGGCTAGTTCAAAGGTCGCCGC
TCTGGTGGGCTCTGTTCTGGTTTGCTTTGGTCTCCACTGG..........

Sequence Detail Report

Gene Symbol (Gene ID) Tspan17 (ENSMUSG00000025875)
Transcript ID ENSMUST00000026993
SNP Information
Strain :
Sequence Retrieve :
Exon translate :
CDS Start ( 1 ) - End ( 271 )
-
Strand : forward reverse
Show sequence : nucleotide amino acid
Color information