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Target CDS Information

Gene Symbol (Gene ID) Map4k4 (ENSMUSG00000026074)
Cross Reference
EMBL AC132909, AC166238
GO GO:0000165, GO:0004111, GO:0004674, ...show all
goslim_goa GO:0000902, GO:0003674, GO:0005575, ...show all
MGI_trans_name Map4k4-016
OTTP OTTMUSP00000068926
OTTT OTTMUST00000127974
UniParc UPI00053BD679
Uniprot/SPTREMBL A0A0A6YVZ8
Vega_transcript Map4k4-016, OTTMUST00000127974
Vega_translation 179106, OTTMUSP00000068926
Definition protein_id:ENSMUSP00000141332
translation:
MANDSPAKSLVDIDLSSLRDPAGIFELVEVVGNGTYGQVYKGRHVKTGQLAAIKVMDVTE
DEEEEIKLEINMLKKYSHHRNIATYYGAFIKKSPPGHDDQLWLVMEFCGAGSITDLVKNT
KGNTLKEDWIAYISREILRGLAHLHIHHVIHRDIKGQNVLLTENAEVKLVDFGVSAQLDR
TVGRRNTFIGTPYWMAPEVIACDENPDATYDYRSDLWSCGITAIEMAEGAPPLCDMHPMR
ALFLIPRNPPPRLKSKKWSKKFFSFIEGCLVKNYMQRPSTEQLLKHPFIRDQPNERQVRI
QLKDHIDRTRKKRGEKDETEYEYSGSEEEEEEVPEQEGEPSSIVNVPGESTLRRDFLRLQ
QENKERSEALRRQQLLQEQQLREQEEYKRQLLAERQKRIEQQKE

Chromosome 1
Length
Position(start - end)
89,047
39,901,230 - 39,990,278
Orient to Chromosome plus
Link Location : (1:39901230-39990278)
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Detail Map


 

Report

Polymorphisms Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Map4k4 (ENSMUSG00000026074)
Transcript ID ENSMUST00000191761
Reports
substitution
cSNPs4
Insertion47
Deletion72
SNPs
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
Insertions
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
Deletions
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
coding sequence substitutions
premature termination by the nucleotide substitution0
synonymous num4
non-synonymous num0
synonymous substitutions 39962219 (p.Val55Val), 39962225 (p.Asp57Asp), 39980595 (p.His151His), 39986727 (p.Gln292Gln),
non-synonymous substitutions
B6 transcript
(ENSMUST00000191761)
MANDSPAKSLVDIDLSSLRDPAGIFELVEVVGNGTYGQVYKGRHVKTGQLAAIKVMDVTE
DEEEEIKLEINMLKKYSHHRNIATYYGAFIKKSPPGHDDQLWLVMEFCGAGSITDLVKNT
KGNTLKEDWIAYISREILRGLAHLHIHHVIHRDIKGQNVLLTENAEVKLVDFGVSAQLDR
TVGRRNTFIGTPYWMAPEVIACDENPDATYDYRSDLWSCGITAIEMAEGAPPLCDMHPMR
ALFLIPRNPPPRLKSKKWSKKFFSFIEGCLVKNYMQRPSTEQLLKHPFIRDQPNERQVRI
QLKDHIDRTRKKRGEKDETEYEYSGSEEEEEEVPEQEGEPSSIVNVPGESTLRRDFLRLQ
QENKERSEALRRQQLLQEQQLREQEEYKRQLLAERQKRIEQQKE
MSMv4 transcript
MANDSPAKSLVDIDLSSLRDPAGIFELVEVVGNGTYGQVYKGRHVKTGQLAAIKVMDVTE
DEEEEIKLEINMLKKYSHHRNIATYYGAFIKKSPPGHDDQLWLVMEFCGAGSITDLVKNT
KGNTLKEDWIAYISREILRGLAHLHIHHVIHRDIKGQNVLLTENAEVKLVDFGVSAQLDR
TVGRRNTFIGTPYWMAPEVIACDENPDATYDYRSDLWSCGITAIEMAEGAPPLCDMHPMR
ALFLIPRNPPPRLKSKKWSKKFFSFIEGCLVKNYMQRPSTEQLLKHPFIRDQPNERQVRI
QLKDHIDRTRKKRGEKDETEYEYSGSEEEEEEVPEQEGEPSSIVNVPGESTLRRDFLRLQ
QENKERSEALRRQQLLQEQQLREQEEYKRQLLAERQKRIEQQKE
homology100.00 (404 / 404)

Exon Detail Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Map4k4 (ENSMUSG00000026074)
Transcript ID ENSMUST00000191761
No. Exon / Intron Start End Start Phase End Phase Length Sequence
5' upstream sequence
..........GTAGTTGAACTGCCTAGCTGACTTGCTGTGGCATGCTGGAAGAAGCCTGT
TTGGTGACCCGTGGTGATCTCCATCCAGGTACTGTCAGGGTTTTAGATCCCGAGCAGAGG
GCTCGCCCGTCCGCCCTCCCTCCCATGGGCCAAACTGGCTCGGGGAACACAGCAGCGAGC
AATCACAGCGACTGTTTTGGATTCTCCCGGACGGTCAAGTGATGCTCAGCGAATCCTCCA
GCAGCAACCAAGCCACAAACTGAGACAGGAAAGGAGAAAGGAGAGGAACACCCCTTGGGG
GGTAAAAAGGAAACGAGGGTCTACGGGACCGACCGGCCGTAGGCGGCGGAGGGGTCCGAG
GCCCGACCCCGGCGCGTCCTGGCACACCCTCTCCCGGGCGAGCGGCGCGGGTGGGGTGTC
CACGGGGCCGCCGGGGCGCTCCGAGTCCTTCATTCATTGTTAGCGGAGGCTGGGGTGTTC
CGCCGCGCCCCGCACTTCCTCCGGGAAGGCCCCGAGGGCTCCCGGCCCCACCCCGGGCCG
GGCCACCATCCGCGGAGGGCCCGCCGCCCGGCCATTGTTCGAGCCCCACCCCTGCTGAAT
ATTCACGCGGGCGGGCGGCGAGCGAGCGAGGGCGAGGGCCGGGTTCCGCCCGCTCTCCCG
GCGGAGGGGGCGGGGGAGTCGCTCGCCCCTCCTCAGCGGCGCCGGTCGGTGCCCCGCGTC
CCCGCCCCCGCCCCCGCCTCCCGCGGCATCTTTGTCTCGCGGCCTCGCGCTCGCTCGCTC
GCCGCGCTCTCCGGCCCCAGCTCCGGGCCGCTCGTGCAGGCGCGCGCGCGCGGGGCGCCG
GGGCCTGAGGCGGCGGGCGACGCCCGGGGGGCGGGTGGGGGCCGAGGGAGGACCGCCAAG
CCATGGTGTGAGCTCCGCGGCCAGCGCTCGCCGCGCCGCGCTCCGCTCCGACCGGACGAC
AAGCCGCCCGGGCGGCGGCGGCCTGCCCGTGCGGCCCGAGCCCCGGCGCC
1 EXON 1 39,901,170 39,901,286 - 0 117
GCCGAGCCCCTGCCCGTCTCTCGCTCTCTCGCCCGCTCCCGGAGCGGCGACCCGGGGAAG
ATGGCGAACGACTCTCCCGCGAAGAGCCTGGTGGACATTGACCTGTCGTCCCTGCGG
INTRON 1 - 2 39,901,287 39,901,508 222
GTGAGTGCGGCCGCGCCCTGCGCGC..........TAACCTCCCCCTCCTCTCTCTCCAG
2 EXON 2 39,901,509 39,901,574 0 0 66
GACCCTGCTGGGATTTTTGAGCTGGTGGAAGTGGTTGGAAATGGCACCTATGGACAAGTC
TATAAG
INTRON 2 - 3 39,901,575 39,962,177 60,603
GTCGGTGTGGGGCGCCTTTGTTCCC..........CAGTCTTTGTTTTCTGTGTCTCCAG
3 EXON 3 39,962,178 39,962,234 0 0 57
GGTCGACATGTTAAAACGGGTCAGCTGGCCGCCATCAAGGTCATGGATGTCACCGAG
INTRON 3 - 4 39,962,235 39,973,926 11,692
GTAAGGCTGGACCGCACTTGTTGAT..........CATGTTTTGTTACTTTTTTCCTAAG
4 EXON 4 39,973,927 39,974,052 0 0 126
GATGAAGAGGAAGAAATCAAACTGGAGATAAATATGCTGAAGAAGTATTCTCATCATCGA
AATATTGCCACGTACTATGGTGCTTTCATTAAGAAGAGCCCTCCAGGACATGATGACCAA
CTCTGG
INTRON 4 - 5 39,974,053 39,976,706 2,654
GTAGGTAGATATGTGCAAGCCTTTG..........ACAACATGTCTTGTCTGCCTTGTAG
5 EXON 5 39,976,707 39,976,817 0 0 111
CTTGTTATGGAGTTTTGTGGGGCTGGGTCCATCACAGACCTTGTGAAGAACACCAAAGGG
AACACTCTCAAAGAAGACTGGATTGCTTACATCTCCAGGGAAATCCTCAGG
INTRON 5 - 6 39,976,818 39,980,559 3,742
GTAAGGAAAGCAGGAGCAACCTGTG..........GACTCAAATCTGCTTTTCTTTTCAG
6 EXON 6 39,980,560 39,980,650 0 1 91
GGATTGGCACATCTCCATATTCACCACGTTATTCATCGAGATATCAAGGGCCAAAATGTG
CTGCTGACCGAGAATGCTGAGGTGAAACTTG
INTRON 6 - 7 39,980,651 39,983,138 2,488
GTAGGTGGCCGGCCGGTGTGTGCCT..........CTTCTTCTTGCTTTTTGTTCCGTAG
7 EXON 7 39,983,139 39,983,269 1 0 131
TTGATTTTGGTGTAAGCGCTCAGCTGGACAGGACGGTTGGACGGAGAAATACGTTCATAG
GCACACCCTACTGGATGGCTCCAGAGGTCATCGCCTGTGATGAGAACCCAGACGCCACTT
ACGACTACAGA
INTRON 7 - 8 39,983,270 39,983,882 613
GTAAGAACACCCACCCCCTTGCCGG..........GGAATATTCTCTTTTGTTTTTGCAG
8 EXON 8 39,983,883 39,983,937 0 1 55
AGTGACCTCTGGTCCTGTGGCATCACAGCCATCGAGATGGCTGAAGGGGCCCCCC
INTRON 8 - 9 39,983,938 39,985,181 1,244
GTGAGTATCTTCCTTCCTTCTGAGC..........CTGACACCGCCATCTCCTTTCCCAG
9 EXON 9 39,985,182 39,985,260 1 2 79
CTCTCTGTGACATGCATCCAATGAGAGCGCTGTTTCTCATCCCCAGAAACCCTCCTCCCA
GGCTGAAGTCAAAAAAATG
INTRON 9 - 10 39,985,261 39,986,624 1,364
GTAAGCCCCACCTCCCCCTCCCTTC..........CAATATGTTTCACTTTCTCTTAAAG
10 EXON 10 39,986,625 39,986,800 2 1 176
GTCAAAGAAATTTTTCAGCTTTATAGAAGGCTGTCTGGTGAAGAATTACATGCAGCGGCC
CTCTACAGAGCAACTTTTAAAACACCCTTTCATAAGGGATCAACCCAATGAAAGGCAGGT
TCGAATCCAGCTTAAGGATCACATAGACCGGACCAGAAAGAAGAGAGGCGAGAAAG
INTRON 10 - 11 39,986,801 39,988,969 2,169
GTATGAAGGCTCCTTTAAGTTTGCC..........TGTTTCTCTCGGCCTTGTTTTTCAG
11 EXON 11 39,988,970 39,989,042 1 2 73
ATGAGACGGAGTACGAGTACAGCGGGAGCGAGGAGGAGGAGGAGGAAGTGCCTGAGCAGG
AGGGAGAGCCAAG
INTRON 11 - 12 39,989,043 39,990,088 1,046
GTACAGACGGCAGCCAGCTCAGGCT..........CCCTGACAGACCCTATCCCCTGCAG
12 EXON 12 39,990,089 39,990,278 2 - 190
TTCCATCGTCAATGTGCCTGGAGAGTCAACTCTGCGACGTGATTTCCTGAGACTGCAGCA
GGAGAACAAGGAGCGGTCTGAGGCTCTGCGGAGACAGCAGCTTCTGCAGGAGCAGCAGCT
CCGGGAGCAGGAGGAGTATAAGAGGCAGCTGCTGGCTGAGAGGCAGAAGCGGATTGAACA
GCAGAAAGAA
3' upstream sequence
CAGAGGAGGCGGCTGGAAGAGGTAGAAAAGAGAAGTTCTGTGGGTTTTTTCCCTCTTCCT
TACTCATGTTCACATCAGACACCCTGCTAGCTTGTTGAGGAAATAACTATAGGTAGGGAG
GTAGTCTGCCCCTACCCTGCTGCAGCTTCTGTAGGGCTATGTGGCTGTGCACTAGATGGC
TTCACGTTCCTGGAGGATCTGCCAACATTTATGTGCATATCGTGAGGAGCAGGACAGCCC
AAGACATGTTCCCATGTGCTTAAATTGACTCACTTAGACTTGACCTCATTTCTTTGCCAT
TGTTGGCTTTTGTGACCCAGTTTTATATTTTTCTGAAACTTCAGACTTTTTCATATGAAA
AGCATTGTTCTCTAAATGCCTTAGCATTTAAGGTGGATTTAAAATAAAGCATTCAGGCCA
GTGAGATTGCTCAATGGATTAAGATGCTTGCACCCAGCACAGCAACTTGAGTTTGTTACT
GGGTCCCCGATAGTATAGAGAGAGAAAGAATAACTCCAGCAAGTTGTCTCTGACTCCGCT
GTGTGTGTGTTTGTGTGTGTATGTGTGTGTGTGTGTGTGTGTACACGCCCTCACATACAC
GCACGCAATACATTTTTTTAAAGGGGTTCAGAGAGCAGAATAGTAAAGTTACTTGTATTT
TATGGTAGGTATAGTTTGCTCCATTTTCATGAAAGGCATTTATATTATAAACACTGGTGA
TGTAATTATTTATAGGTTATTTGTATTGTAATCACACAAATGTACTATTTCCCTATAATT
CACTTGAGAATCATAACTTTTAATTTTCTTTTCTTGACTGTGTTTTACTTTATATGCCAA
ACCCCCACAACTTCTCATCATTTGATTTGAACATGTGTGTGTTTTTTGTGTTTTTTGTTT
TTTTCTGCTTCTTACTGTTTTTCCTAGTAGAAGAAACGTCAAAGATAAAGCCCTGTAATG
ACATTTCTGGTGGGATTTAGTTAAAATAACTAAGCATGCT..........

Sequence Detail Report

Gene Symbol (Gene ID) Map4k4 (ENSMUSG00000026074)
Transcript ID ENSMUST00000191761
SNP Information
Strain :
Sequence Retrieve :
Exon translate :
CDS Start ( 1 ) - End ( 404 )
-
Strand : forward reverse
Show sequence : nucleotide amino acid
Color information