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Target CDS Information

Gene Symbol (Gene ID) Rims1 (ENSMUSG00000041670)
Cross Reference
EMBL AC117188, AC125522, AC130211, ...show all
GO GO:0005515, GO:0005622, GO:0006461, ...show all
goslim_goa GO:0003674, GO:0003723, GO:0005575, ...show all
MGI_trans_name Rims1-203
Reactome R-MMU-112310, R-MMU-112315, R-MMU-112316, ...show all
UniParc UPI0000D8ABB3
Uniprot/SPTREMBL F6VBT9
Definition protein_id:ENSMUSP00000095419
translation:
MSSAVGPRGPRPPTVPPPMQELPDLSHLTEEERNIIMAVMDRQKEEEEKEEAMLKCVVRD
MAKPAACKTPRNAESQPHQPPLNIFRCVCVPRKPSSEEGGPDRNWRLHQQFESYKEQVRK
IGEEARRYQGEHKDDAPTCGICHKTKFADGCGHLCSYCRTKFCARCGGRVSLRSNNVSKV
VMWVCNLCRKQQEILTKSGAWFFGSGPQQPSQDGTLSDTATGAGSEVPREKKARLQERSR
SQTPLSTAAVSSQDTASHGAPLDRNKGAEPSQQALGPEQKQASRSRSEPPRERKKAPGLS
EQNGKGGQKSERKRVPKSVVQPGEGTADERERKERRETRRLEKGRSQDYPDRLEKREDGR
VAEDEKQRKEEEGVSTPEYTSCEDVELESESVSEKGDLDYWLDPATWHSRETSPISSHPV
TWQPSKEGDRLIGRVILNKRTTMPKESGALLGLKVVGGKMTDLGRLGAFITKVKKGSLAD
VVGHLRAGDEVLEWNGKPLPGATNEEVYNIILESKSEPQVEIIVSRPIGDIPRIPESSHP
PLESSSSSFESQKMERPSISVISPTSPGALKDAPQVLPGQLSVKLWYDKVGHQLIVNVLQ
ATDLPPRVDGRPRNPYVKMYFLPDRSTISLGDQTALFHKTVSYTFNFQKYVIFFETNPFL
EKPDLAYYKLSCSTMSFACRKPSGHTEVSVCLTVVQSQRISDSDISDYEVDDGIGVVPPV
GYRASARESKATTLTVPEQQRTTHHRSRSVSPHRGDDQGRPRSRLPNVPLQRSLDEIHPT
RRSRSPTRHHDASRSLADHRSRHAESQYSSEPDSELLMLPRAKRGRSAECLHMTSELQPS
LDRARSASTNCLRPDTSLHSPERERHSRKSERSSIQKQSRKGTASDADRVLPPCLSRRGY
AIPRATDQPVIRGKHTTRSRSSEHSSIRTLCSMHHLAPGGSAPPSPLLTRTHRQGSPTQS
PPADTSFGSRRGRQLPQVPVRSGSIEQASLVVEERTRQMKMKVHRFKQTTGSGSSQELDH
EQYSKYNIHKDQYRSCDNASAKSSDSDVSDVSAISRASSTSRLSSTSFMSEQSERPRGRI
SSFTPKMQGRRMGTSGRAIIKSTSVSGEIYTLEHNDGSQSDTAVGTVGAGGKKRRSSLSA
KVVAIVSRRSRSTSQLSQTESGHKKLKSTIQRSTETGMAAEMRKMVRQPSRESTDGSINS
YSSEGNLIFPGVRVGPDSQFSDFLDGLGPAQLVGRQTLATPAMGDIQIGMEDKKGQLEVE
VIRARSLTQKPGSKSTPAPYVKVYLLENGACIAKKKTRIARKTLDPLYQQSLVFDESPQG
KVLQVIVWGDYGRMDHKCFMGVAQILLEELDLSSMVIGWYKLFPPSSLVDPTLTPLTRRA
SQSSLESSSGPPCIRS

Chromosome 1
Length
Position(start - end)
517301
22288422 - 22805724
Orient to Chromosome minus
Link Location : (1:22288422-22805724)
/

Detail Map


 

Report

Polymorphisms Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Rims1 (ENSMUSG00000041670)
Transcript ID ENSMUST00000097810
Reports
substitution
cSNPs10
Insertion334
Deletion404
SNPs
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
Insertions
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
Deletions
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
coding sequence substitutions
premature termination by the nucleotide substitution0
synonymous num6
non-synonymous num4
synonymous substitutions 22346359 (p.Leu1138Leu), 22346411 (p.Ser1120Ser), 22373400 (p.Arg1062Arg), 22397476 (p.Pro979Pro), 22397500 (p.Arg971Arg), 22538360 (p.Ala268Ala),
non-synonymous substitutions 22373381 (p.Met1069Leu), 22427492 (p.Ala804Val), 22534045 (p.Asp358Glu), 22534140 (p.Ala327Thr),
B6 transcript
(ENSMUST00000097810)
MSSAVGPRGPRPPTVPPPMQELPDLSHLTEEERNIIMAVMDRQKEEEEKEEAMLKCVVRD
MAKPAACKTPRNAESQPHQPPLNIFRCVCVPRKPSSEEGGPDRNWRLHQQFESYKEQVRK
IGEEARRYQGEHKDDAPTCGICHKTKFADGCGHLCSYCRTKFCARCGGRVSLRSNNVSKV
VMWVCNLCRKQQEILTKSGAWFFGSGPQQPSQDGTLSDTATGAGSEVPREKKARLQERSR
SQTPLSTAAVSSQDTASHGAPLDRNKGAEPSQQALGPEQKQASRSRSEPPRERKKAPGLS
EQNGKGGQKSERKRVPKSVVQPGEGTADERERKERRETRRLEKGRSQDYPDRLEKREDGR
VAEDEKQRKEEEGVSTPEYTSCEDVELESESVSEKGDLDYWLDPATWHSRETSPISSHPV
TWQPSKEGDRLIGRVILNKRTTMPKESGALLGLKVVGGKMTDLGRLGAFITKVKKGSLAD
VVGHLRAGDEVLEWNGKPLPGATNEEVYNIILESKSEPQVEIIVSRPIGDIPRIPESSHP
PLESSSSSFESQKMERPSISVISPTSPGALKDAPQVLPGQLSVKLWYDKVGHQLIVNVLQ
ATDLPPRVDGRPRNPYVKMYFLPDRSTISLGDQTALFHKTVSYTFNFQKYVIFFETNPFL
EKPDLAYYKLSCSTMSFACRKPSGHTEVSVCLTVVQSQRISDSDISDYEVDDGIGVVPPV
GYRASARESKATTLTVPEQQRTTHHRSRSVSPHRGDDQGRPRSRLPNVPLQRSLDEIHPT
RRSRSPTRHHDASRSLADHRSRHAESQYSSEPDSELLMLPRAKRGRSAECLHMTSELQPS
LDRARSASTNCLRPDTSLHSPERERHSRKSERSSIQKQSRKGTASDADRVLPPCLSRRGY
AIPRATDQPVIRGKHTTRSRSSEHSSIRTLCSMHHLAPGGSAPPSPLLTRTHRQGSPTQS
PPADTSFGSRRGRQLPQVPVRSGSIEQASLVVEERTRQMKMKVHRFKQTTGSGSSQELDH
EQYSKYNIHKDQYRSCDNASAKSSDSDVSDVSAISRASSTSRLSSTSFMSEQSERPRGRI
SSFTPKMQGRRMGTSGRAIIKSTSVSGEIYTLEHNDGSQSDTAVGTVGAGGKKRRSSLSA
KVVAIVSRRSRSTSQLSQTESGHKKLKSTIQRSTETGMAAEMRKMVRQPSRESTDGSINS
YSSEGNLIFPGVRVGPDSQFSDFLDGLGPAQLVGRQTLATPAMGDIQIGMEDKKGQLEVE
VIRARSLTQKPGSKSTPAPYVKVYLLENGACIAKKKTRIARKTLDPLYQQSLVFDESPQG
KVLQVIVWGDYGRMDHKCFMGVAQILLEELDLSSMVIGWYKLFPPSSLVDPTLTPLTRRA
SQSSLESSSGPPCIRS*
MSMv4 transcript
MSSAVGPRGPRPPTVPPPMQELPDLSHLTEEERNIIMAVMDRQKEEEEKEEAMLKCVVRD
MAKPAACKTPRNAESQPHQPPLNIFRCVCVPRKPSSEEGGPDRNWRLHQQFESYKEQVRK
IGEEARRYQGEHKDDAPTCGICHKTKFADGCGHLCSYCRTKFCARCGGRVSLRSNNVSKV
VMWVCNLCRKQQEILTKSGAWFFGSGPQQPSQDGTLSDTATGAGSEVPREKKARLQERSR
SQTPLSTAAVSSQDTASHGAPLDRNKGAEPSQQALGPEQKQASRSRSEPPRERKKAPGLS
EQNGKGGQKSERKRVPKSVVQPGEGTTDERERKERRETRRLEKGRSQDYPDRLEKREEGR
VAEDEKQRKEEEGVSTPEYTSCEDVELESESVSEKGDLDYWLDPATWHSRETSPISSHPV
TWQPSKEGDRLIGRVILNKRTTMPKESGALLGLKVVGGKMTDLGRLGAFITKVKKGSLAD
VVGHLRAGDEVLEWNGKPLPGATNEEVYNIILESKSEPQVEIIVSRPIGDIPRIPESSHP
PLESSSSSFESQKMERPSISVISPTSPGALKDAPQVLPGQLSVKLWYDKVGHQLIVNVLQ
ATDLPPRVDGRPRNPYVKMYFLPDRSTISLGDQTALFHKTVSYTFNFQKYVIFFETNPFL
EKPDLAYYKLSCSTMSFACRKPSGHTEVSVCLTVVQSQRISDSDISDYEVDDGIGVVPPV
GYRASARESKATTLTVPEQQRTTHHRSRSVSPHRGDDQGRPRSRLPNVPLQRSLDEIHPT
RRSRSPTRHHDASRSLADHRSRHVESQYSSEPDSELLMLPRAKRGRSAECLHMTSELQPS
LDRARSASTNCLRPDTSLHSPERERHSRKSERSSIQKQSRKGTASDADRVLPPCLSRRGY
AIPRATDQPVIRGKHTTRSRSSEHSSIRTLCSMHHLAPGGSAPPSPLLTRTHRQGSPTQS
PPADTSFGSRRGRQLPQVPVRSGSIEQASLVVEERTRQMKMKVHRFKQTTGSGSSQELDH
EQYSKYNIHKDQYRSCDNASAKSSDSDVSDVSAISRASSTSRLSSTSFLSEQSERPRGRI
SSFTPKMQGRRMGTSGRAIIKSTSVSGEIYTLEHNDGSQSDTAVGTVGAGGKKRRSSLSA
KVVAIVSRRSRSTSQLSQTESGHKKLKSTIQRSTETGMAAEMRKMVRQPSRESTDGSINS
YSSEGNLIFPGVRVGPDSQFSDFLDGLGPAQLVGRQTLATPAMGDIQIGMEDKKGQLEVE
VIRARSLTQKPGSKSTPAPYVKVYLLENGACIAKKKTRIARKTLDPLYQQSLVFDESPQG
KVLQVIVWGDYGRMDHKCFMGVAQILLEELDLSSMVIGWYKLFPPSSLVDPTLTPLTRRA
SQSSLESSSGPPCIRS*
homology99.71 (1397 / 1397)

Exon Detail Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Rims1 (ENSMUSG00000041670)
Transcript ID ENSMUST00000097810
No. Exon / Intron Start End Start Phase End Phase Length Sequence
5' upstream sequence
..........AAAAGATTGCATTGAAGGGTACAATGCTAATTCGGGTTGCTGGATGTGTG
TATGTTGTGTGTGTGTGCACCAAAATTATCTAGGAACCCACACACAACTGTGGCTGTGCA
CACTTGCTGAGTAAAGCAGAAAGACATGGTGGCAGGAAGGGGAAAATAGACCTAGAGGGT
GTACCATCCTGCTGTTCTAAACCCTGTGGGTGCTCAAAAAGCATCAATGATGAAGACTGT
GGCGAGGATGAAGATGATTAAAGCAACCCATGGGAAAATAGGGTTGGGGAGGATGACATG
GACCAGGACCTGGGAGAGGGAGGATGACTCAGGGTGAGGGGTACCTTGGGAGAGATCAGT
GGAGTATGCACGTCGGCGAGCGTGGGGCGGGGGGAATGGCCAGGGCACGCGTGGCTCGGA
CCCGGGGAGTGGGTGGGTGGTGCCCGTGGGCGGAGCGGCTCCGGGACTGAGTGGCTGGCA
GCTTATGTCTGCGAGAGCAGCAGCATCACCCGGGAGCGAAGCTCCGAGACTCCGCCTAAC
TGACACCCAAACTCTCCCTCTCCCTCCCGCAGCCCCAAACTGGAGGCAGCGGAGCCCGCG
AGCAAGCAGCGTCGGGCGGCCCCGGCCCGGCCCCGCCCCCGGCCCGCCAGCCCAGCCCGC
GCCCGGCCGCCGTGCTCCGGAGCTCAGCGCCAGCCCTCGCCCTCTCGCCGAGCCTCCGCC
TGTCCGCCCCCGCCGGCCGAGGCTGGGCTGCGGGAGGCGGCCGGGCGGCCCCGAGCCTCG
CCAGGGCGACCCAAACAAAGGCAGCATCCGGGCTCGGCGGGAGGCAGAGCATCATGAGAG
ACTGGGTCCTCGCTGTCCCCGGCTCCGCTGCTGCTGCCGCTGCCGCCGCCGCTGCCGCCG
CCGGGAGGGCTTCGCTGTGAGCGTGGAAAGCAGGGGCGCAGCTGCGGGGCGTGAATCCGA
AAGGTGAGAGCCAGAGCCAGCGAGCCGAGGGGGCGGGCAGGCCACGAAAA
1 EXON 1 22805561 22805724 - 2 164
ATGTCCTCGGCCGTGGGGCCCCGAGGTCCTCGCCCACCCACGGTGCCTCCCCCTATGCAA
GAACTGCCCGACCTGAGCCACCTGACCGAGGAGGAGAGGAACATTATCATGGCAGTGATG
GACCGGCAGAAGGAAGAGGAGGAAAAAGAAGAGGCCATGCTCAA
INTRON 1 - 2 22727011 22805560 78550
GTAAGCACCCCCCAACCCCCCAGGG..........TTGTGCTGTCTATCATGCGCCCCAG
2 EXON 2 22726930 22727010 2 2 81
GTGTGTTGTCAGGGACATGGCGAAGCCTGCTGCCTGCAAAACACCAAGAAATGCTGAAAG
CCAGCCCCATCAACCACCACT
INTRON 2 - 3 22630481 22726929 96449
GTAAGTACAGCATTGGTTTTATTGA..........TGTCTTCTTCTCCCTTGCCTTGCAG
3 EXON 3 22630412 22630480 2 2 69
GAACATTTTCAGATGTGTCTGTGTTCCCAGAAAGCCAAGCAGCGAAGAGGGAGGCCCAGA
CAGAAACTG
INTRON 3 - 4 22596585 22630411 33827
GTATTTCCTCTCCTTCCTGCTTTGG..........TTTCTCTCTCGTCTCTTTTGCCCAG
4 EXON 4 22596365 22596584 2 0 220
GAGATTGCATCAACAGTTTGAAAGCTACAAGGAACAAGTGAGAAAAATCGGAGAGGAAGC
CAGGCGTTACCAGGGCGAGCACAAAGATGATGCCCCGACGTGTGGAATCTGTCATAAGAC
AAAGTTTGCTGATGGATGTGGCCATCTCTGCTCCTATTGTCGCACCAAGTTCTGTGCACG
CTGTGGAGGCCGAGTGTCTCTGCGATCGAACAATGTGAGT
INTRON 4 - 5 22592310 22596364 4055
GTCCTGTGAACACAGCAGGGGACCA..........ATTTTTCCTGGAGCTGGAGTTATAG
5 EXON 5 22592304 22592309 0 0 6
AAGGTT
INTRON 5 - 6 22538624 22592303 53680
GTGAGCTGTTTGAGGTGGGTTCTGG..........ATTTCTCTTTCTCTTCTCCAAATAG
6 EXON 6 22538286 22538623 0 2 338
GTTATGTGGGTATGCAATTTATGTCGAAAGCAACAAGAGATATTAACGAAATCTGGAGCG
TGGTTCTTCGGAAGTGGTCCTCAGCAGCCCAGTCAAGATGGGACTCTGAGTGACACGGCT
ACAGGTGCTGGATCTGAGGTGCCAAGAGAAAAGAAAGCTCGGCTCCAAGAGCGATCAAGG
TCTCAGACGCCCTTGAGTACAGCAGCTGTCTCTTCCCAAGACACTGCTTCCCATGGTGCA
CCACTGGACAGGAACAAAGGGGCAGAGCCCTCACAGCAAGCCTTGGGTCCTGAACAGAAG
CAGGCATCAAGGTCAAGAAGTGAGCCACCAAGGGAAAG
INTRON 6 - 7 22534241 22538285 4045
GTAATAATTCACTAGCACTGTAAAC..........ATCAACTGTTCTCTGCGCATCACAG
7 EXON 7 22534004 22534240 2 2 237
GAAGAAGGCTCCAGGGCTTTCAGAGCAGAATGGCAAGGGAGGCCAGAAGAGTGAGCGCAA
ACGTGTCCCCAAGTCTGTGGTGCAACCCGGGGAAGGGACCACGGATGAACGGGAGAGGAA
GGAGAGGCGGGAAACCCGCAGGCTGGAGAAAGGGCGCTCTCAGGACTACCCGGACCGGCT
CGAGAAACGCGAGGAAGGCAGGGTGGCTGAAGACGAAAAGCAGAGGAAGGAGGAGGA
INTRON 7 - 8 22533797 22534003 207
GTATCAGACTAGGTACCGCAGCGAC..........GCAAGCGCGCGCAGACCACCGCCAG
8 EXON 8 22533796 22533796 2 0 1
G
INTRON 8 - 9 22533469 22533795 327
GTCTCTCCCCCGGAGTCCCCGCGCG..........GTCGGTGAGCAGCTCCGAGGAGGAG
9 EXON 9 22533399 22533468 0 1 70
GGCGTGTCCACGCCGGAGTACACGAGCTGCGAGGACGTGGAGCTGGAGAGCGAGAGCGTG
AGCGAGAAAG
INTRON 9 - 10 22486653 22533398 46746
GTGAGCGCGGCTCGGAGGTGGAGAT..........CCTTTTGTCCCTTTTCACGTCACAG
10 EXON 10 22486588 22486652 1 0 65
GTGACTTGGACTACTGGTTGGATCCTGCCACGTGGCATAGCAGGGAAACGTCGCCTATTA
GTTCG
INTRON 10 - 11 22484753 22486587 1835
GTAAGTTTTTTGACGGCGTATACAG..........TTTTTTAAACTTTATGTTTTGACAG
11 EXON 11 22484642 22484752 0 0 111
CATCCTGTAACGTGGCAGCCATCTAAAGAGGGGGACCGATTAATCGGCCGTGTTATTCTT
AACAAAAGAACAACCATGCCCAAAGAATCAGGTGCATTATTGGGTCTCAAG
INTRON 11 - 12 22483254 22484641 1388
GTATGTATCCAGGTTTATAATGCTG..........GGCTCATGAATTTGTCACTTTGCAG
12 EXON 12 22483154 22483253 0 1 100
GTGGTTGGAGGAAAAATGACGGACTTAGGGCGTCTTGGTGCTTTCATCACCAAAGTAAAG
AAGGGTAGCCTGGCAGATGTTGTCGGACACCTAAGAGCAG
INTRON 12 - 13 22479559 22483153 3595
GTAAATTCCCCCCTTTTCCTATATA..........AAACTACCTTTTTTTTAAATTCAAG
13 EXON 13 22479435 22479558 1 2 124
GGGATGAAGTTCTAGAGTGGAATGGTAAACCCCTGCCGGGAGCAACAAACGAAGAAGTTT
ACAACATTATTTTAGAATCAAAATCAGAACCTCAAGTTGAAATTATTGTTTCAAGGCCTA
TTGG
INTRON 13 - 14 22475735 22479434 3700
GTAAGGCTAAAAAAACTTACTTCTT..........TTTTCACTGTATCTGTTTCTTTTAG
14 EXON 14 22475688 22475734 2 1 47
TGACATCCCCAGGATCCCTGAGAGTTCCCACCCTCCCCTGGAGTCCA
INTRON 14 - 15 22472838 22475687 2850
GTGAGTATAGCATTTCCTTGTTATT..........ATGTTCATTTTTATCCTCATTTTAG
15 EXON 15 22472725 22472837 1 0 113
GTTCAAGTTCCTTTGAATCTCAGAAGATGGAAAGGCCTTCCATTTCTGTTATTTCTCCAA
CCAGCCCTGGAGCTCTGAAAGATGCCCCACAAGTCTTACCAGGGCAACTCTCA
INTRON 15 - 16 22468322 22472724 4403
GTATGTGCTTTTTATACACAGTGAA..........TACATGGACTTTTCTTCACTCCTAG
16 EXON 16 22468191 22468321 0 2 131
GTGAAGCTGTGGTATGATAAGGTGGGGCACCAGCTGATTGTAAATGTTCTACAAGCAACA
GATCTACCCCCTAGAGTAGATGGGCGTCCCAGAAATCCCTATGTAAAAATGTATTTTCTT
CCAGATAGAAG
INTRON 16 - 17 22468110 22468190 81
GTAATACATGAATTTTGAAAAGTTG..........TCCTTCCTGGGACATATTTTCTAAG
17 EXON 17 22468100 22468109 2 0 10
TACAATAAGT
INTRON 17 - 18 22468098 22468099 2
AT
18 EXON 18 22468041 22468097 0 0 57
TTAGGGGACCAAACTGCATTATTCCACAAGACAGTGTCTTATACCTTTAACTTCCAA
INTRON 18 - 19 22432989 22468040 35052
GTAAGATGGTATTTTTAAATATATC..........GTATATGGGAAGAAATTTTGTTTAA
19 EXON 19 22432923 22432988 0 0 66
AAATATGTAATATTTTTTGAAACAAACCCATTTCTAGAAAAGCCAGACCTTGCTTACTAT
AAATTA
INTRON 19 - 20 22432922 22432922 1
T
20 EXON 20 22432844 22432921 0 0 78
TCTTGTTCAACTATGTCCTTTGCATGTCGTAAACCGAGTGGACACACAGAGGTATCTGTT
TGCCTTACTGTTGTGCAG
INTRON 20 - 21 22432842 22432843 2
GA
21 EXON 21 22432772 22432841 0 1 70
TCTCAGCGAATCAGTGATAGTGACATCTCAGATTATGAGGTTGATGATGGTATTGGCGTA
GTGCCTCCAG
INTRON 21 - 22 22428622 22432771 4150
GTGCGTGGTGAAAGGCATGGCTCCA..........AGTTTTATCTGTATGCTCTTGTCAG
22 EXON 22 22428465 22428621 1 2 157
TGGGTTATAGAGCTAGTGCTAGAGAGAGTAAAGCCACCACGTTAACAGTGCCAGAGCAGC
AAAGAACCACACATCACCGCTCACGTTCCGTGTCTCCTCATCGCGGCGATGATCAGGGAA
GGCCTCGTTCACGTTTACCAAATGTGCCATTACAGAG
INTRON 22 - 23 22427588 22428464 877
GTAGGTCTGGAGCAGGCTTAATGCT..........AATGAAGTTTTGTGGCACATTTTAG
23 EXON 23 22427462 22427587 2 2 126
GAGCTTAGATGAAATCCATCCAACACGAAGGTCACGTTCTCCAACCCGACACCATGATGC
CTCCCGAAGCCTGGCCGATCACAGATCACGACATGTGGAAAGTCAGTATTCATCAGAGCC
AGACAG
INTRON 23 - 24 22425934 22427461 1528
GTACTTTTCCCAAGTAGAATCTCAG..........CTCACCACCCATCCTGTCTGTGCAG
24 EXON 24 22425871 22425933 2 2 63
TGAGCTTCTCATGCTGCCCAGAGCAAAACGAGGACGAAGTGCAGAATGCCTACACATGAC
CAG
INTRON 24 - 25 22421831 22425870 4040
GTAAATACAGGGATTTGGTTCTGGT..........TCTACCACTGGATGTAATGCACTAG
25 EXON 25 22421741 22421830 2 2 90
TGAACTGCAGCCCTCTCTTGACAGGGCTAGGAGTGCTAGTACCAACTGCTTGAGACCAGA
TACTAGTTTGCATTCACCAGAACGAGAAAG
INTRON 25 - 26 22404516 22421740 17225
GTATAAAATAAAGACTTTCTGAATT..........TTTCTTTAACATTTCATCCCCACAG
26 EXON 26 22404444 22404515 2 2 72
GCACTCCAGAAAGTCTGAAAGATCTAGCATCCAAAAACAGTCTAGGAAAGGCACAGCCTC
TGATGCAGACAG
INTRON 26 - 27 22398782 22404443 5662
GTAGGCTTGATGTTGTGCAGTGCTG..........ATCTTTTTTGGCACTAATGTTTTAG
27 EXON 27 22398599 22398781 2 2 183
GGTTCTCCCACCATGCCTTTCTAGAAGGGGATACGCAATCCCAAGAGCAACCGATCAACC
GGTCATTAGGGGAAAGCATACCACTCGCTCCCGGTCGAGCGAGCACTCTAGTATCAGAAC
CCTGTGTTCTATGCACCACCTTGCCCCCGGAGGGTCAGCGCCGCCTTCTCCGCTTCTGAC
AAG
INTRON 27 - 28 22397564 22398598 1035
GTTGCTATTCAGTGTCCAGCCCAGC..........CCCTCCCTTTGCTGTTTGCCTACAG
28 EXON 28 22397451 22397563 2 1 113
AACGCACCGACAAGGAAGCCCCACCCAGTCACCTCCAGCTGACACATCCTTTGGCAGTCG
CCGTGGAAGACAGCTCCCACAGGTGCCAGTCCGAAGCGGCAGTATAGAACAAG
INTRON 28 - 29 22379541 22397450 17910
GTATCCAAATAAGCGACATCTTTGT..........AGCTTTCTGTTGTGTGTTTTTGCAG
29 EXON 29 22379428 22379540 1 0 113
CGAGCTTAGTAGTGGAGGAACGAACGAGACAGATGAAAATGAAGGTACACCGATTTAAGC
AGACAACAGGGTCTGGGTCTAGTCAAGAACTTGACCACGAGCAATACTCCAAG
INTRON 29 - 30 22373511 22379427 5917
GTAAAATTAGTAGTATCCAGCCAAT..........ATCCTCTCTTGTGTTTAATCTTTAG
30 EXON 30 22373344 22373510 0 2 167
TACAACATACATAAAGATCAGTACAGAAGCTGTGATAACGCGTCCGCCAAGTCATCAGAT
AGTGATGTCAGTGATGTGTCCGCCATTTCCAGAGCCAGCAGCACCTCACGGCTCAGCAGC
ACAAGCTTTCTGTCAGAGCAGTCTGAGCGCCCCAGGGGCAGGATCAG
INTRON 30 - 31 22346529 22373343 26815
GTGAGTTGGCAATGCTGTCTCTGTG..........ATATGTTTTTACTTTGTAAATATAG
31 EXON 31 22346293 22346528 2 1 236
TTCATTTACCCCCAAAATGCAAGGCAGACGGATGGGGACTTCAGGAAGAGCCATCATCAA
GAGCACCAGTGTAAGTGGAGAGATATATACACTGGAGCACAATGACGGCAGCCAGTCGGA
CACGGCCGTGGGTACCGTTGGAGCTGGTGGAAAGAAGCGGAGGTCCAGCTTGAGTGCCAA
AGTGGTAGCCATTGTGTCTCGAAGAAGCAGAAGCACATCACAGCTCAGCCAGACAG
INTRON 31 - 32 22296997 22346292 49296
GTGAGCACAGTGCGCTCCGCCTCCC..........CCTGTTTCCACTCTCCCCCCATCAG
32 EXON 32 22296858 22296996 1 2 139
AGTCCGGCCACAAGAAGTTAAAAAGCACCATTCAGAGGAGTACGGAAACGGGAATGGCGG
CTGAAATGCGGAAGATGGTGAGACAGCCCAGCCGGGAGTCCACGGATGGCAGCATCAACA
GTTATAGCTCAGAAGGAAA
INTRON 32 - 33 22292935 22296857 3923
GTAAGTGACATGATGTCTTTGCTGC..........TTTTGCTCTTATGTGTTTGCTATAG
33 EXON 33 22292822 22292934 2 1 113
CTTAATATTTCCTGGAGTTCGCGTGGGACCTGACAGTCAGTTCAGTGATTTCCTTGATGG
ATTGGGGCCAGCCCAGCTTGTCGGCCGCCAAACCCTCGCCACCCCAGCCATGG
INTRON 33 - 34 22291115 22292821 1707
GTAAGGATTCTTTTTCTGCAGTTTA..........CATTTTCTTTGGTCTTCACTTGCAG
34 EXON 34 22291013 22291114 1 1 102
GCGATATCCAAATCGGGATGGAGGATAAGAAGGGTCAGTTGGAGGTTGAGGTTATCAGAG
CCCGGAGCCTTACACAAAAACCTGGCTCCAAATCTACACCTG
INTRON 34 - 35 22290200 22291012 813
GTAAGGAAAAGTTGCACCATTTTGG..........TATATGTCTGCTCATCTTGGTCTAG
35 EXON 35 22290060 22290199 1 0 140
CTCCCTATGTGAAAGTTTATCTTTTGGAAAATGGAGCCTGTATTGCCAAAAAGAAGACAA
GAATTGCACGGAAAACTCTCGATCCCTTGTATCAGCAGTCCCTGGTTTTTGATGAAAGTC
CACAGGGTAAAGTTCTTCAG
INTRON 35 - 36 22288641 22290059 1419
GTCAGTAAACTTTGCTTGGTTAATT..........TTACAATATATTTCTCTATCTGCAG
36 EXON 36 22286251 22288640 0 - 2390
GTGATTGTCTGGGGTGACTATGGAAGAATGGACCACAAATGCTTTATGGGTGTGGCTCAA
ATCTTGTTGGAAGAACTTGATCTGTCCAGCATGGTGATTGGATGGTATAAATTGTTCCCT
CCATCCTCCCTGGTGGATCCCACACTCACTCCCCTGACCCGCCGGGCTTCCCAATCATCA
CTGGAAAGTTCGTCTGGGCCTCCCTGCATCCGGTCATAGTAAACTCCTAACCTTCCAGCC
AAACTCTACATTTCAGGATAATTATCAGAACCAGATATTTCGTGATCAAGAGCATTGTTG
GAGACAGACAATCAACTTGTGTTTTGCCTGTAGTAGTTGTTCGATAATTGTGTCCCAATT
GTTGTTTAAAACATGGCTTCGTATGACAGAACAAGGCAGTCAATCACATTGCAGTAAGAA
TCGACATGCTAGTGAGAGCCACTGATACTTCTTGCAAATAGGAAAGAGAGAGAGAGAGAG
AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGGGAAGGAAACCTCAAGTTCACACAC
ACACCAAACTGAACAAACTGGAAAGTCTCACTCTGTGAAAAGGTGTACTTCACACATTTC
TGCACAGACCACAAGCAGTGTTGTTTCCCTGGTGTTTGAGATTCTTGAGTTCTTCTGAGT
GCTTTCCTTGTTTGAGCGTTGTTTGCTGGTTTTTTTCCCCATTGTCTCTCTTTCTCTGTC
TTCACTATATTTGTTCTTTCCACTAGTTTGTTTGTTTTGTTTTGTTTTGTTTTTCATTTT
TTTGTCTTTGTCTTTCTCTGCTTCGTCATAACAGAGTTATGGTGTTCACAGAGACCCTTC
CTTTCTTTTTTCCAAAAGCACCAAAAAAGGGCTGAAGCCGTCTCTGTAGCATTTTCCCCA
AAGTTTTCAAAAGCTGGGCAAGGTAAAGCCAGGGAAGGGTATCAGCGGCAGCCAGTTTAC
AGTTCTTCCAAGTCTTGTATGTGGAATTTCCACACACACACACACACACACACAGACAGT
AAAAATCATCACCCAAACTAGTAGTTGCAGAATCACTTCTCAGTGAAGAGCGTATCTGTT
CCCATTCCAGATAATTCATTGCTATTTTCCATTGTTTGGCACAGAAGACTTTGAAGGACC
TAGAACTGATGCTGGGGATGAAGGCTAACCACATAGTAGTGCTTTGGAAACCCTTTCCGA
AATGCCTTTTTACTTCCTGATAACAAAAGAAAAAAAAATGTTCATGTGTAGAAACCATGC
TCTCAACTCCCCAAAATGGTGACTAAGAATGGATTTGAGCCTAAGACACTTTCAGCTATG
CCCAGGCTTCTCAGCCATGCCCCAGAGTAGACTCGTCTGCCCTGGAAAGAGCATAGTATG
AGCTGTTTAATATTGCACTGGAAATTCCAGTTCATAAACTCTGCACTAAATTAATGTTTT
TATTGGATTTCAGTTTACATTTCTTTAAGGTCAATGCAAGCACAAAGCTTGATTTTTTTA
AATGCACAATATCTTACTTTGGGGGAAGAAAAAGAATACAGCCAAATACCAATTTGCATA
TTCTTCATAATTTCCCTTGTGACCTGTGTATGTGCTGCAGGCGCCTGCTTGGTCCTGCAG
CTGCATCAATATGCACCCCCTCTCCTTTTATGAGTCGTTCAACTTTTTGTGATTTCACAG
TTAGAGCAGCATGACCTGGAGCTGTTCAAAGCTGCATGCATTTTGTATAAAAAAATATGA
AAAAGAAAGAAAAAAAGCAAAGAGACAAAAGGTTATTTAATAATGTATGTTAGCTCCATA
TAGGCTGGCTTGTATGTTGCATGTACTTGTACAGTTTGCTTGTTAATTACTATATTGAAA
TAACCAAGAAATCTAAGCCATCCATTTTTGTTATAGACATTTTGCAGGTTTTAGCCAGAC
TCAGTATGTGGGTCTGGTGTGAAATGTCTATAGATGGACTTTATTTTTTACCCTCTGGAA
AACGTGATGTAGTATGGACCAAAATTCCTTCTAATAAATATTTTGGTGTCGATTCCTCCT
GTGGGGCTGTGACACATGTAGACACTGTGTAAACACTAGGTTTTAATCCATAGACATACT
GCCTGCACCAAGTGAATCATTTATTATTATTTACACATGTCAGAATTCCCTGCCCATTAT
CCCACAGGGCACAGATTGACCACCACCCACCATGCTGTGCAGGAAGAACTGAAGCACTTG
GTGCACTTCTACTAGATTCCGTTCTGTCTTAGTGGCCAACAATCAACCGATTAAAATTGG
GTAGTAATATCTTTCTATCTTGACCACTTGTCTTAACAACCCCTTGTGCTTTTAAATGGA
CTTCCCACTCATGTATGTAAACATGTTTAATAAAACTTACTTTTCATGTC
3' upstream sequence
AGTTGGTAGCCATCTGCGTTCTATGTTTTGCCAGCTTTCCATTGTGGGTTCTTTGGTGCA
AAAGGAGAACCAGGTGTTGGGACAGGGAGGCTTGGGTTCGCTGTCTGCTGTGGGCATTTG
ATTGACCTGTCACTGCACTATATATGTCTTAACAGACAACCTGAAGGGTACTTTGCATTA
CATATGAGTATTCACTTTGTCAGCCTGTCTTAAGTGAGCACATGTCTATACTTCTGAAAA
GTGGTTTATTAAAGACAATAAATCTCAGTAAGAATCAAACGAAGGACGTTTCTCTGCTGC
TGTTTGAATGTGCTAATAAAAGCGACAACGCTGTCGTCCACTTGACAAATCATTTCACGT
TCTATGACATAGTTGAAGAATCAATCTTTGCACCTCTTGTTATAGTATCTTGGCTTCCTC
CTAGCCTTTTCCCTCTGATCCGCTGTCTAGCTTATAAGACCTTGCCTACAGTAGGCTGAC
TTGAAATAAACTAAGTCTGCACTGACGCTGAGTCACCAAGGTAACATCTCCAATACTCAT
AGGTAAGTCTCTCATGAGCTTTTGTAGACTACACTAGCATCCACTTCATAAGGAGAAATA
AGAACAGTGGTAGCAACATCCTATCTGACATACCCAAGCAACTTAAGACTCCAGCAGGTG
TTTGAAGTTTTAAAATAAACATGTGACCTCTTGCCCATGGAGTGATTTAATGAATGGGCC
CACCAAAGATGAGATTACGTATTGTGTTAGGCGGAGAGGAGGCTAAAGCTGTGTTCAGTT
CCATGTACAACAAACCATCAGAGTAAAGTGTTGCACACATGCTCATCACCATATGGTTGC
CATGTGGTTGTGTGAGGCAGAGGACAAAGCTGCCCCTGAGACCAGGGTGCAGGCAAAGTC
AGTTTTAGGCTAGACAAGATGAGAAATATTTCCTTTCAAATAATAATAATAATAATAATA
ATAATAATAATAATAATAATAATAATAAAAAGCTACCAAG..........

Sequence Detail Report

Gene Symbol (Gene ID) Rims1 (ENSMUSG00000041670)
Transcript ID ENSMUST00000097810
SNP Information
Strain :
Sequence Retrieve :
Exon translate :
CDS Start ( 1 ) - End ( 1397 )
-
Strand : forward reverse
Show sequence : nucleotide amino acid
Color information