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Target CDS Information

Gene Symbol (Gene ID) Khdrbs2 (ENSMUSG00000026058)
Cross Reference
EMBL AC117186, AC122027, AC124771, ...show all
GO GO:0005070, GO:0005634, GO:0008143, ...show all
goslim_goa GO:0003674, GO:0003723, GO:0005575, ...show all
MGI_trans_name Khdrbs2-004
OTTP OTTMUSP00000067899
OTTT OTTMUST00000125039
UniParc UPI00001ECFA1
Uniprot/SPTREMBL A0A087WR32
Vega_transcript Khdrbs2-004, OTTMUST00000125039
Vega_translation 178882, OTTMUSP00000067899
Definition protein_id:ENSMUSP00000140451
translation:
MGEEKYLPELMAEKDSLDPSFVHASRLLAEEIEKFQGSDGKKEDEEKKYLDVISNKNIKL
SERVLIPVKQYPKECAANLYLPASVNSEVTHI

Chromosome 1
Length
Position(start - end)
137938
32172918 - 32310857
Orient to Chromosome plus
Link Location : (1:32172918-32310857)
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Detail Map


 

Report

Polymorphisms Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Khdrbs2 (ENSMUSG00000026058)
Transcript ID ENSMUST00000185666
Reports
substitution
cSNPs1
Insertion103
Deletion130
SNPs
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
Insertions
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
Deletions
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
coding sequence substitutions
premature termination by the nucleotide substitution0
synonymous num0
non-synonymous num1
synonymous substitutions
non-synonymous substitutions 32310826 (p.Ala83Val),
B6 transcript
(ENSMUST00000185666)
MGEEKYLPELMAEKDSLDPSFVHASRLLAEEIEKFQGSDGKKEDEEKKYLDVISNKNIKL
SERVLIPVKQYPKECAANLYLPASVNSEVTHI*
MSMv4 transcript
MGEEKYLPELMAEKDSLDPSFVHASRLLAEEIEKFQGSDGKKEDEEKKYLDVISNKNIKL
SERVLIPVKQYPKECAANLYLPVSVNSEVTHI*
homology98.92 (93 / 93)

Exon Detail Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Khdrbs2 (ENSMUSG00000026058)
Transcript ID ENSMUST00000185666
No. Exon / Intron Start End Start Phase End Phase Length Sequence
5' upstream sequence
..........GCTTGGGAAAAGATAATTTTAAAGAAAGAATCATTTCATTTTAAGTAGAC
AAGGTACAGCACAGGGGTCCCATCTGGAAGGGAAGGGTACCTCCCTTATCCCTCCTTCCT
TGGCGATGATTCTTGTGGGTAAAATACTCATTTAAATAAAGGTGGGGCATATACAAAGTA
GTTCAGCAGCATTCCCATGGCAGCGAAAGAGACCCTGATGTCTAAAATAGGAGAACATCA
GAGCGACAGAAGTTAGGCATCATCTAGCTTCTTTCATTCACAATTCTCCCAGCTAAGTTT
ACACAGTGAGTGAATTTTGCACCATAAGAATGGGTGGATCCCTAGAACTAATTCTGTATC
ACGGGCAAGGTACACTGGAAGCGTTTTGCTCTACTACAGAATCCAGGCACTTCTTCATTT
GTACATTAGTGGACATCCTTCTGCCCCAAGATATAGGTCATGGGAAACACAGCCCACATT
TTGTCTCAGATTTCCAACCTTGCCCAAGAGTCTGCGATCATCCAGGGGAGAGACACCTGT
GCCTTGGAGACCTAGGTGAAGTGCTCAGCCTCTGTGCTCATGGGGCACACATTCTTGCTC
TCTCATCCTCGTGCCTGCCTGGCAGCCCGCACCCACTCCACAGCACTGGCCAGACCTGAG
AACACGGCGGGCTAAGGCGGCCAGGAGAGTGCGCTTGCACTTCGCACACCCCTCCCCTCC
GCAGCAGCCTCCTGCCACTCAGGCGACTCGACTTGCGGCCCCGCCCAATGATAGTCCATA
GTCTCCGCGTGCGCCCCGCCCTCGGACCCCGCTTCCAATAGGAAGCCGGCGGGGTTGGGC
CGCACGGGCATCCTCTCCAGCTGAGGCCGCGGCCGGAGCCTGGCTGGGGCGCGGGAGAGG
CAGGTACCAGCGCGGTCTGCGCAGCCCCAGGCGCTAGAGCTGCGCTCTCCTGTGGAAGAA
CGGTTCCCGGGGGAGCCAGGGACCGAGGCGTCGGAGCGGGCGGAAATTGC
1 EXON 1 32172887 32173008 - 1 122
GCCTGACCGGGCACGGTCCGAAGTCCGCGCTATGGGAGAAGAGAAATACTTGCCTGAGCT
GATGGCAGAGAAGGATAGCCTGGATCCATCTTTTGTGCACGCGTCGCGCCTTCTGGCGGA
AG
INTRON 1 - 2 32173009 32243899 70891
GTAGGACCGGCTGGGCTCCTGCCAG..........TTGTGATTATTATTTTTTCTTTCAG
2 EXON 2 32243900 32244027 1 0 128
AAATTGAGAAATTTCAAGGTTCAGATGGGAAAAAGGAAGATGAAGAAAAGAAATATCTCG
ATGTCATCAGCAACAAAAACATAAAGCTCTCTGAAAGAGTATTGATTCCTGTGAAACAGT
ATCCAAAG
INTRON 2 - 3 32244028 32310797 66770
GTACTGCATGCATGCAGCATGTACT..........TTCTCTGTTTGTTTGTTTATTTCAG
3 EXON 3 32310798 32311090 0 - 293
GAGTGTGCAGCAAACCTTTATCTTCCTGTTTCTGTGAATTCTGAAGTCACCCATATCTAG
TCCCTATGGCTCCTAAGAAATTTTTGATTTGTCACTGTTAAAAATCTGGACTTTACACTG
ATTCTTGGACTGGTGGTTCTTATCCATCAGCATGCTGAACCTTAGTACCTGTCTCATCTC
CAGCTGTTTTGCCAGAGCTGCCGCCTTCCCAATGCAGCTCCATGAGCTTGCCCAATTCAA
ACTTGGGTTTCTTCAGCATTTTTACTTTTCTAATAAAGACATCATGAAGAGAA
3' upstream sequence
TAAATGGACTGGCGAGCCTTTTCTATGTCTTTCCCAATGCTGTCTGGAATCAATTTATTA
ACTACTTCCTTCAAGTCATTGGTTTGCACCTCTCGGGTCATGATTTCCATCATCTTCTTA
AATATAATCTACTCACATTATATAATGTTACTTATACATAGTTTTGACACAGCTCTTTGG
CATTAGGAAATCCATTGGTGTACTCTTCCCTCCAGAAGACCACTACCAATCCCAGCTTTA
TTCAGTTGGCTGTTAATTCATCAATTTTGGCCAATCCATTGGGTTCATCCTTGTTCAGCT
CTTGTGTGGGCAGTGAGATAAGTAAAGACTTGATGGGTTGTAGCTTCTGATATTTCTAGG
AGGCACGATCACACAGCAAACTTCTTAATCTTCTGGCAATTGTATATCAAATTTCAGTAG
ACAACTGTACAGTAAGTGTATAGTAAGACATTGTTGATCCTAGAGGTAACCATGCCTGCT
GTACCTGGAATTTTTACATATACAGAACACTGAACCTTAAAAGAACAGAATGCTGAGATA
TAACATATACATAGTTTTATCTCAGTTACACATTCTTTCTAAGTTTTCATTATAGATTTG
TTTTATTTCTTTACATAAAGTTGATAGACTCTATTTCTTCAGTAGAGTCACATTAGATTT
CCTTAGCAAACCAACACTAGAGAAACTTTTCATAGCTTGATTCAATGGTTGTTAGAGATG
CCACAAAGAAAGATATTTGGGTGGTTTCTAGTAACCACAGGCAACTTCTCAGGTGTTCAC
TGACCTCTGGCCAATAACTTCTAGAAGCAGGATGGTGGGGGTCGGGGGGCATGGCAAGGA
GACTCGTTTGAAAGCTGCTTTGGAATGAAGGGTGTCAATAACCTTCCTAGTAGAAAAGAC
AACTTTCCTAGTCATTCTCCTCAGTAAATCTGTCTTGAACTTCCTAACATTTGGGGTGTG
AATGAAATTCACACTGATACATGTATGATTTTCTGACTCA..........

Sequence Detail Report

Gene Symbol (Gene ID) Khdrbs2 (ENSMUSG00000026058)
Transcript ID ENSMUST00000185666
SNP Information
Strain :
Sequence Retrieve :
Exon translate :
CDS Start ( 1 ) - End ( 93 )
-
Strand : forward reverse
Show sequence : nucleotide amino acid
Color information