MoG+ -Mouse Genome database with high added value-

Target CDS Information

Gene Symbol (Gene ID)

Cspp1 (ENSMUSG00000056763)

Cross Reference

GO	GO:0000922, GO:0005515, GO:0005654, ...show all
goslim_goa	GO:0003674, GO:0005575, GO:0005622, ...show all
MGI_trans_name	Cspp1-001
OTTP	OTTMUSP00000034157
OTTT	OTTMUST00000067775
UCSC	uc007ahh.1
UniParc	UPI00000E77D0
Uniprot/SWISSPROT	B2RX88
Vega_transcript	Cspp1-001, OTTMUST00000067775
Vega_translation	178695, OTTMUSP00000034157

Definition

protein_id:ENSMUSP00000112800
translation:

MADSLDEFIEEQKAKLAKDKAELESDPPYMEMKGKASEKLSENSKILISMAKENIPPSSQ
QQPKGPLGIEYGLSLPLGEDYEQKKHKLKEELRQDYRRYLTQKNFLSTGETDPSTLGVSL
PIDERLSAKERLKLERNREYNQFLRGKAESTEKVRQVEKNIEPKSQRNKNPISQGKSDLP
LQIQTAYTHSEGPWLSRQEEGLYRQLDGEIELRSRRPLKQTKEEVGISGAEHPSLSGSAG
VPERRARRANGERVLDRQHCRADRDPGVSEDMDERFRFESDFDRRLLRVYTNGRYLHLHF
SSLYLLNTGVL

Chromosome

Length
Position(start - end)

21788
10045086 - 10066875

Orient to Chromosome

plus

Link

Location : (1:10045086-10066875)
/

Detail Map

name	Cops5 (ENSMUSG00000025917)
type	gene
link	VEGA Ensembl MGI
xref
definition	locus_tag : Cops5 note : COP9 (constitutive photomorphogenic) homolog, subunit 5 (Arabidopsis thaliana) [Source:MGI Symbol;Acc:MGI:1349415]

name	Cspp1 (ENSMUSG00000056763)
type	gene
link	VEGA Ensembl MGI
xref
definition	locus_tag : Cspp1 note : centrosome and spindle pole associated protein 1 [Source:MGI Symbol;Acc:MGI:2681832]

name	1700047N06Rik (ENSMUSG00000102356)
type	gene
link	VEGA Ensembl MGI
xref
definition	locus_tag : 1700047N06Rik note : RIKEN cDNA 1700047N06 gene [Source:MGI Symbol;Acc:MGI:1923853]

name	Cops5 (ENSMUSG00000025917)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000027050

name	Cops5 (ENSMUSG00000025917)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000186528

name	Cops5 (ENSMUSG00000025917)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000188619

name	Cspp1 (ENSMUSG00000056763)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000191012

name	Cspp1 (ENSMUSG00000056763)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000071087

name	Cspp1 (ENSMUSG00000056763)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000117415

name	Cspp1 (ENSMUSG00000056763)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000118263

name	Cspp1 (ENSMUSG00000056763)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000122156

name	Cspp1 (ENSMUSG00000056763)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000119714

name	Cspp1 (ENSMUSG00000056763)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000155974

name	Cspp1 (ENSMUSG00000056763)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000186294

name	Cspp1 (ENSMUSG00000056763)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000149214

name	Cops5 (ENSMUSG00000025917) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	CCDS:CCDS14818.1 Uniprot/SWISSPROT:O35864 RefSeq_peptide:NP_001264030.1 RefSeq_peptide:NP_038743 RefSeq_mRNA:NM_001277101.1 RefSeq_mRNA:NM_013715.2 Vega_transcript:Cops5-001 Vega_transcript:OTTMUST00000072996 UCSC:uc007ahe.2 Fantom:2700067H17 Fantom:I730044N10 Fantom:I830030O16 EMBL:AF065386 EMBL:AF068223 EMBL:AK012499 EMBL:AK146271 EMBL:AK151492 EMBL:BC046753 EMBL:U70736 GO:GO:0000338 GO:GO:0000338 GO:GO:0003713 GO:GO:0004843 GO:GO:0004843 GO:GO:0005515 GO:GO:0005634 GO:GO:0005634 GO:GO:0005654 GO:GO:0005654 GO:GO:0005667 GO:GO:0005737 GO:GO:0005737 GO:GO:0006355 GO:GO:0008021 GO:GO:0008021 GO:GO:0008180 GO:GO:0008180 GO:GO:0008237 GO:GO:0008237 GO:GO:0010388 GO:GO:0010388 GO:GO:0016579 GO:GO:0016579 GO:GO:0030054 GO:GO:0045944 GO:GO:0045944 GO:GO:0046328 GO:GO:0046328 GO:GO:0046872 GO:GO:0048471 GO:GO:0051726 GO:GO:1903894 GO:GO:1903894 GO:GO:1990182 GO:GO:1990182 MEROPS:M67.002 MGI_trans_name:Cops5-001 Vega_translation:178689 Vega_translation:OTTMUSP00000037726 goslim_goa:GO:0000988 goslim_goa:GO:0003674 goslim_goa:GO:0005575 goslim_goa:GO:0005622 goslim_goa:GO:0005623 goslim_goa:GO:0005634 goslim_goa:GO:0005654 goslim_goa:GO:0005737 goslim_goa:GO:0006464 goslim_goa:GO:0006810 goslim_goa:GO:0008150 goslim_goa:GO:0008233 goslim_goa:GO:0016023 goslim_goa:GO:0016192 goslim_goa:GO:0043167 goslim_goa:GO:0043226 goslim_goa:GO:0043234 protein_id:AAC17179.1 protein_id:AAD03470.1 protein_id:AAF61318.1 protein_id:AAH46753.1 protein_id:BAB28282.1 protein_id:BAE27030.1 protein_id:BAE30445.1 OTTP:OTTMUSP00000037726 OTTT:OTTMUST00000072996 UniParc:UPI000000BAB7
definition	note : transcript_id=ENSMUST00000027050 protein_id : ENSMUSP00000027050 translation : MAASGSGMAQKTWELANNMQEAQSIDEIYKYDKKQQQEILAAKPWTKDHHYFKYCKISALALLKMVMHARSGGNLEVMGLMLGKVDGETMIIMDSFALPVEGTETRVNAQAAAYEYMAAYIENAKQVGRLENAIGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFVAVVIDPTRTISAGKVNLGAFRTYPKGYKPPDEGPSEYQTIPLNKIEDFGVHCKQYYALEVSYFKSSLDRKLLELLWNKYWVNTLSSSSLLTNADYTTGQVFDLSEKLEQSEAQLGRGSFMLGLETHDRKSEDKLAKATRDSCKTTIEAIHGLMSQVIKDKLFNQINVA

name	Cops5 (ENSMUSG00000025917) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	Vega_transcript:Cops5-006 Vega_transcript:OTTMUST00000118982 Uniprot/SPTREMBL:A0A087WRH6 EMBL:AC102570 GO:GO:0000338 GO:GO:0003713 GO:GO:0004843 GO:GO:0005515 GO:GO:0005634 GO:GO:0005654 GO:GO:0005667 GO:GO:0005737 GO:GO:0006355 GO:GO:0008021 GO:GO:0008180 GO:GO:0008237 GO:GO:0010388 GO:GO:0016579 GO:GO:0045944 GO:GO:0046328 GO:GO:0051726 GO:GO:1903894 GO:GO:1990182 MGI_trans_name:Cops5-006 Vega_translation:178691 Vega_translation:OTTMUSP00000066329 goslim_goa:GO:0000988 goslim_goa:GO:0003674 goslim_goa:GO:0005575 goslim_goa:GO:0005622 goslim_goa:GO:0005623 goslim_goa:GO:0005634 goslim_goa:GO:0005654 goslim_goa:GO:0005737 goslim_goa:GO:0006464 goslim_goa:GO:0006810 goslim_goa:GO:0008150 goslim_goa:GO:0008233 goslim_goa:GO:0016023 goslim_goa:GO:0016192 goslim_goa:GO:0043226 goslim_goa:GO:0043234 OTTP:OTTMUSP00000066329 OTTT:OTTMUST00000118982 UniParc:UPI00000EA150
definition	note : transcript_id=ENSMUST00000186528 protein_id : ENSMUSP00000140633 translation : MAASGSGMAQKTWELANNMQEAQSIDEIYKYDKKQQQEILAAKPWTKE

name	Cops5 (ENSMUSG00000025917) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	Vega_transcript:Cops5-005 Vega_transcript:OTTMUST00000118983 Uniprot/SPTREMBL:A0A087WQA8 UCSC:uc033fia.1 EMBL:AC102570 GO:GO:0000338 GO:GO:0003713 GO:GO:0004843 GO:GO:0005515 GO:GO:0005634 GO:GO:0005654 GO:GO:0005667 GO:GO:0005737 GO:GO:0006355 GO:GO:0008021 GO:GO:0008180 GO:GO:0008237 GO:GO:0010388 GO:GO:0016579 GO:GO:0045944 GO:GO:0046328 GO:GO:0051726 GO:GO:1903894 GO:GO:1990182 MGI_trans_name:Cops5-005 Vega_translation:178692 Vega_translation:OTTMUSP00000066330 goslim_goa:GO:0000988 goslim_goa:GO:0003674 goslim_goa:GO:0005575 goslim_goa:GO:0005622 goslim_goa:GO:0005623 goslim_goa:GO:0005634 goslim_goa:GO:0005654 goslim_goa:GO:0005737 goslim_goa:GO:0006464 goslim_goa:GO:0006810 goslim_goa:GO:0008150 goslim_goa:GO:0008233 goslim_goa:GO:0016023 goslim_goa:GO:0016192 goslim_goa:GO:0043226 goslim_goa:GO:0043234 OTTP:OTTMUSP00000066330 OTTT:OTTMUST00000118983 UniParc:UPI00046210DE
definition	note : transcript_id=ENSMUST00000188619 protein_id : ENSMUSP00000140115 translation : MSLRRRRAPAREWSGPTSPPVSSVMAALRVYHHYFKYCKISALALLKMVMHARSGGNLEVMGLMLGKVDGETMIIMDSFALPVEGTETRVNAQAAAYEYMAAYIENAKQVGRLENAIGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFVAVVIDPTRTISAGKVNLGAFRTYPKGYKPPDEGPSEYQTIPLNKIEDFGVHCKQYYALEVS

name	Cspp1 (ENSMUSG00000056763) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	Vega_transcript:Cspp1-019 Vega_transcript:OTTMUST00000118986 Uniprot/SPTREMBL:A0A087WS14 UCSC:uc007ahg.1 EMBL:AC102570 EMBL:AC159972 GO:GO:0000922 GO:GO:0005654 GO:GO:0005813 GO:GO:0005819 GO:GO:0005874 GO:GO:0032467 GO:GO:0051781 MGI_trans_name:Cspp1-019 Vega_translation:178693 Vega_translation:OTTMUSP00000066331 goslim_goa:GO:0005575 goslim_goa:GO:0005622 goslim_goa:GO:0005623 goslim_goa:GO:0005634 goslim_goa:GO:0005654 goslim_goa:GO:0005815 goslim_goa:GO:0005856 goslim_goa:GO:0008150 goslim_goa:GO:0043226 goslim_goa:GO:0043234 OTTP:OTTMUSP00000066331 OTTT:OTTMUST00000118986 UniParc:UPI0004620FB1
definition	note : transcript_id=ENSMUST00000191012 protein_id : ENSMUSP00000140856 translation : MADSLDEFIEEQKAKLAKDKAELESDPPYMEMKGKASEKLSENSKILISMAKENIPPSSQQQPKGPLGMV

name	Cspp1 (ENSMUSG00000056763) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	CCDS:CCDS35511.1 Uniprot/SWISSPROT:B2RX88 RefSeq_peptide:NP_080769 RefSeq_mRNA:NM_026493.3 RefSeq_mRNA_predicted:XM_006495483 RefSeq_mRNA_predicted:XM_006495484 RefSeq_peptide_predicted:XP_006495542.2 RefSeq_peptide_predicted:XP_006495545.1 RefSeq_peptide_predicted:XP_006495546.1 RefSeq_peptide_predicted:XP_006495547.1 RefSeq_peptide_predicted:XP_006495549.1 Vega_transcript:Cspp1-004 Vega_transcript:OTTMUST00000067846 UCSC:uc007ahi.1 GO:GO:0000922 GO:GO:0000922 GO:GO:0005515 GO:GO:0005515 GO:GO:0005654 GO:GO:0005654 GO:GO:0005737 GO:GO:0005813 GO:GO:0005813 GO:GO:0005819 GO:GO:0005819 GO:GO:0005874 GO:GO:0032467 GO:GO:0032467 GO:GO:0051781 GO:GO:0051781 MGI_trans_name:Cspp1-004 Vega_translation:178694 Vega_translation:OTTMUSP00000034200 goslim_goa:GO:0003674 goslim_goa:GO:0005575 goslim_goa:GO:0005622 goslim_goa:GO:0005623 goslim_goa:GO:0005737 OTTP:OTTMUSP00000034200 OTTT:OTTMUST00000067846 UniParc:UPI0000F0887C
definition	note : transcript_id=ENSMUST00000071087 protein_id : ENSMUSP00000068804 translation : MADSLDEFIEEQKAKLAKDKAELESDPPYMEMKGKASEKLSENSKILISMAKENIPPSSQQQPKGPLGIEYGLSLPLGEDYEQKKHKLKEELRQDYRRYLTQKNFLSTGETDPSTLGVSLPIDERLSAKERLKLERNREYNQFLRGKAESTEKVRQVEKNIEPKSQRNKNPISQGKSDLPLQIQTAYTHSEGPWLSRQEEGLYRQLDGEIELRSRRPLKQTKEEVGISGAEHPSLSGSAGVPERRARRANGERVLDRQHCRADRDPGVSEDMDERFRFESDFDRRLLRVYTNGRPHGSRRGYVDGDDVPEEPNTQISAAENKSVHCNGPPRSADLDITSPFAGMLFGGEDRELTKRRKEKYRQELLEQIAEQQKKKRREKDLAFGITTSGVQDPEKSPDRLKQFSLTPRHFEEMPPERPRVAFQTPPPPFSAPSSPSVPPVHSAPSHNEDLHSGLGSTLGELAHPRVLPVPLNPPPPPLLAPPASNYRTPYDDAYYFYGARNTLDPNIVYYGSGMIGGQPAPHVSAPVTHQVAPPAVNTVGQNEQKVLSDGLRNSGLVFEDKPKPSTQSLQSYQEALQEQIREREARRKKERLEKEEYEAKLEAEMRIYNPWGKGGGGAPLRDAKGNLITDLNRMHRQNIDAYHNPDARTYEDKRAVVSIDQNLATSNAENLEDSANKNSGPLQTQSSPFARGNTFGEPLSELQIKQQELYKNFLRFQIEEKRQREEAEREKLRVAEEKEEKRLAEQRARIQQEYEEEQERRREKEEEQRLKNEELIRLAEERRKEAERKKKEEEEKHNLQLQHYYERENIIGDETKHLRQPSPVVPALQNKIASKLQRPPSVDTIISSFIHESSMSRAQSPPVPARKNQLRAEEEKKNVIMELSEMRKQLRSEERRLQGRLLHLDSDDEIPMRKRERNPMDIFDMARHRVQAPVRRPSPKGLDATTFQNIHDFNELRERDSDTRVDLRLMYPDPPRDHHTLEIQQQALLREQQKRLNRIKMRRDAGADLDTICTDNAQGRRMPRDDTNDFLKNSLLESDSAFIGAYGETYPVIEDNAFPPPSQLPSARERRRNKLKGLDFDSSRLHTPQDGLSLKSISSVNVDQVRMRNEDRMRRLTEQQKKPTNTDDEGSLVDPDDIMRHLSDDGRNSAATEPWLRPGTSESLKRFMAEHLNEEQHKGPGKPGTFTWQGLSAAHA

name	Cspp1 (ENSMUSG00000056763) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	Uniprot/SWISSPROT:B2RX88 Vega_transcript:Cspp1-001 Vega_transcript:OTTMUST00000067775 UCSC:uc007ahh.1 GO:GO:0000922 GO:GO:0005515 GO:GO:0005654 GO:GO:0005737 GO:GO:0005813 GO:GO:0005819 GO:GO:0005874 GO:GO:0032467 GO:GO:0051781 MGI_trans_name:Cspp1-001 Vega_translation:178695 Vega_translation:OTTMUSP00000034157 goslim_goa:GO:0003674 goslim_goa:GO:0005575 goslim_goa:GO:0005622 goslim_goa:GO:0005623 goslim_goa:GO:0005737 OTTP:OTTMUSP00000034157 OTTT:OTTMUST00000067775 UniParc:UPI00000E77D0
definition	note : transcript_id=ENSMUST00000117415 protein_id : ENSMUSP00000112800 translation : MADSLDEFIEEQKAKLAKDKAELESDPPYMEMKGKASEKLSENSKILISMAKENIPPSSQQQPKGPLGIEYGLSLPLGEDYEQKKHKLKEELRQDYRRYLTQKNFLSTGETDPSTLGVSLPIDERLSAKERLKLERNREYNQFLRGKAESTEKVRQVEKNIEPKSQRNKNPISQGKSDLPLQIQTAYTHSEGPWLSRQEEGLYRQLDGEIELRSRRPLKQTKEEVGISGAEHPSLSGSAGVPERRARRANGERVLDRQHCRADRDPGVSEDMDERFRFESDFDRRLLRVYTNGRYLHLHFSSLYLLNTGVL

name	Cspp1 (ENSMUSG00000056763) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	Uniprot/SWISSPROT:B2RX88 Vega_transcript:Cspp1-003 Vega_transcript:OTTMUST00000067777 UCSC:uc007ahk.1 GO:GO:0000922 GO:GO:0005515 GO:GO:0005654 GO:GO:0005737 GO:GO:0005813 GO:GO:0005819 GO:GO:0005874 GO:GO:0032467 GO:GO:0051781 MGI_trans_name:Cspp1-003 Vega_translation:178696 Vega_translation:OTTMUSP00000034158 goslim_goa:GO:0003674 goslim_goa:GO:0005575 goslim_goa:GO:0005622 goslim_goa:GO:0005623 goslim_goa:GO:0005737 OTTP:OTTMUSP00000034158 OTTT:OTTMUST00000067777 UniParc:UPI00000E77D0
definition	note : transcript_id=ENSMUST00000118263 protein_id : ENSMUSP00000112476 translation : MADSLDEFIEEQKAKLAKDKAELESDPPYMEMKGKASEKLSENSKILISMAKENIPPSSQQQPKGPLGIEYGLSLPLGEDYEQKKHKLKEELRQDYRRYLTQKNFLSTGETDPSTLGVSLPIDERLSAKERLKLERNREYNQFLRGKAESTEKVRQVEKNIEPKSQRNKNPISQGKSDLPLQIQTAYTHSEGPWLSRQEEGLYRQLDGEIELRSRRPLKQTKEEVGISGAEHPSLSGSAGVPERRARRANGERVLDRQHCRADRDPGVSEDMDERFRFESDFDRRLLRVYTNGRYLHLHFSSLYLLNTGVL

name	Cspp1 (ENSMUSG00000056763) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	Uniprot/SWISSPROT:B2RX88 Vega_transcript:Cspp1-006 Vega_transcript:OTTMUST00000067947 UCSC:uc007ahj.1 GO:GO:0000922 GO:GO:0005515 GO:GO:0005654 GO:GO:0005737 GO:GO:0005813 GO:GO:0005819 GO:GO:0005874 GO:GO:0032467 GO:GO:0051781 MGI_trans_name:Cspp1-006 Vega_translation:178697 Vega_translation:OTTMUSP00000034271 goslim_goa:GO:0003674 goslim_goa:GO:0005575 goslim_goa:GO:0005622 goslim_goa:GO:0005623 goslim_goa:GO:0005737 OTTP:OTTMUSP00000034271 OTTT:OTTMUST00000067947 UniParc:UPI00000E933F
definition	note : transcript_id=ENSMUST00000122156 protein_id : ENSMUSP00000113663 translation : MADSLDEFIEEQKAKLAKDKAELESDPPYMEMKGKASEKLSENSKILISMAKENIPPSSQQQPKGPLGIEYGLSLPLGEDYEQKKHKLKEELRQDYRRYLTQGITQAKRKKNFLSTGETDPSTLGVSLPIDERLSAKERLKLERNREYNQFLRGKAESTEKVRQVEKNIEPKSQRNKNPISQGKSDLPLQIQTAYTHSEGPWLSRQEEGLYRQLDGEIELRSRRPLKQTKEEVGISGAEHPSLSGSAGVPERRARRANGERVLDRQHCRADRDPGVSEDMDERFRFESDFDRRLLRVYTNGRYLHLHFSSLYLLNTGVL

name	Cspp1 (ENSMUSG00000056763) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	Uniprot/SWISSPROT:B2RX88 Vega_transcript:Cspp1-005 Vega_transcript:OTTMUST00000067946 UCSC:uc007ahl.1 GO:GO:0000922 GO:GO:0005515 GO:GO:0005654 GO:GO:0005737 GO:GO:0005813 GO:GO:0005819 GO:GO:0005874 GO:GO:0032467 GO:GO:0051781 MGI_trans_name:Cspp1-005 Vega_translation:178698 Vega_translation:OTTMUSP00000034270 goslim_goa:GO:0003674 goslim_goa:GO:0005575 goslim_goa:GO:0005622 goslim_goa:GO:0005623 goslim_goa:GO:0005737 OTTP:OTTMUSP00000034270 OTTT:OTTMUST00000067946 UniParc:UPI00000E77D0
definition	note : transcript_id=ENSMUST00000119714 protein_id : ENSMUSP00000114091 translation : MADSLDEFIEEQKAKLAKDKAELESDPPYMEMKGKASEKLSENSKILISMAKENIPPSSQQQPKGPLGIEYGLSLPLGEDYEQKKHKLKEELRQDYRRYLTQKNFLSTGETDPSTLGVSLPIDERLSAKERLKLERNREYNQFLRGKAESTEKVRQVEKNIEPKSQRNKNPISQGKSDLPLQIQTAYTHSEGPWLSRQEEGLYRQLDGEIELRSRRPLKQTKEEVGISGAEHPSLSGSAGVPERRARRANGERVLDRQHCRADRDPGVSEDMDERFRFESDFDRRLLRVYTNGRYLHLHFSSLYLLNTGVL

name	Cspp1 (ENSMUSG00000056763) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	Vega_transcript:Cspp1-008 Vega_transcript:OTTMUST00000067949 Uniprot/SPTREMBL:D3Z378 UCSC:uc007ahg.1 EMBL:AC102570 EMBL:AC159972 GO:GO:0000922 GO:GO:0005654 GO:GO:0005813 GO:GO:0005819 GO:GO:0005874 GO:GO:0032467 GO:GO:0051781 MGI_trans_name:Cspp1-008 Vega_translation:178699 Vega_translation:OTTMUSP00000034273 goslim_goa:GO:0005575 goslim_goa:GO:0005622 goslim_goa:GO:0005623 goslim_goa:GO:0005634 goslim_goa:GO:0005654 goslim_goa:GO:0005815 goslim_goa:GO:0005856 goslim_goa:GO:0008150 goslim_goa:GO:0043226 goslim_goa:GO:0043234 OTTP:OTTMUSP00000034273 OTTT:OTTMUST00000067949 UniParc:UPI000021674A
definition	note : transcript_id=ENSMUST00000155974 protein_id : ENSMUSP00000117726 translation : MADSLDEFIEEQKAKLAKDKAELESDPPYMEMKGKASEKLSENSKILISMAKENIPPSSQQQPKGPLGIEYGLSLPLGEDYEQKKHKLKEELRQDYRRYLTQ

name	Cspp1 (ENSMUSG00000056763) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	Uniprot/SWISSPROT:B2RX88 RefSeq_peptide_predicted:XP_006495544.2 RefSeq_peptide_predicted:XP_011236667.1 Vega_transcript:Cspp1-017 Vega_transcript:OTTMUST00000118990 UCSC:uc011wih.1 GO:GO:0000922 GO:GO:0005515 GO:GO:0005654 GO:GO:0005737 GO:GO:0005813 GO:GO:0005819 GO:GO:0005874 GO:GO:0032467 GO:GO:0051781 MGI_trans_name:Cspp1-017 Vega_translation:178700 Vega_translation:OTTMUSP00000066332 goslim_goa:GO:0003674 goslim_goa:GO:0005575 goslim_goa:GO:0005622 goslim_goa:GO:0005623 goslim_goa:GO:0005634 goslim_goa:GO:0005654 goslim_goa:GO:0005737 goslim_goa:GO:0005815 goslim_goa:GO:0005856 goslim_goa:GO:0008150 goslim_goa:GO:0043226 goslim_goa:GO:0043234 OTTP:OTTMUSP00000066332 OTTT:OTTMUST00000118990 UniParc:UPI0001E88EB2
definition	note : transcript_id=ENSMUST00000186294 protein_id : ENSMUSP00000139775 translation : MDLNCYPHLVAGHAHSYLIWRGKASEKLSENSKILISMAKENIPPSSQQQPKGPLGIEYGLSLPLGEDYEQKKHKLKEELRQDYRRYLTQGITQAKRKKNFLSTGETDPSTLGVSLPIDERLSAKERLKLERNREYNQFLRGKAESTEKVRQVEKNIEPKSQRNKNPISQGKSDLPLQIQTAYTHSEGPWLSRQEEGLYRQLDGEIELRSRRPLKQTKEEVGISGAEHPSLSGSAGVPERRARRANGERVLDRQHCRADRDPGVSEDMDERFRFESDFDRRLLRVYTNGRPHGSRRGYVDGDDVPEEPNTQISAAENKSVHCNGPPRSADLDITSPFAGMLFGGEDRELTKRRKEKYRQELLEQIAEQQKKKRREKDLAFGITTSGVQDPEKSPDRLKQFSLTPRHFEEMPPERPRVAFQTPPPPFSAPSSPSVPPVHSAPSHNEDLHSGLGSTLGELAHPRVLPVPLNPPPPPLLAPPASNYRTPYDDAYYFYGARNTLDPNIVYYGSGMIGGQPAPHVSAPVTHQVAPPAVNTVGQNEQKVLSDGLRNSGLVFEDKPKPSTQSLQSYQEALQEQIREREARRKKERLEKEEYEAKLEAEMRIYNPWGKGGGGAPLRDAKGNLISPLQTQSSPFARGNTFGEPLSELQIKQQELYKNFLRFQIEEKRQREEAEREKLRVAEEKEEKRLAEQRARIQQEYEEEQERRREKEEEQRLKNEELIRLAEERRKEAERKKKEEEEKHNLQLQHYYERENIIGDETKHLRQPSPVVPALQNKIASKLQRPPSVDTIISSFIHESSMSRAQSPPVPARKNQLRAEEEKKNVIMELSEMRKQLRSEERRLQGRLLHLDSDDEIPMRKRERNPMDIFDMARHRVQAPVRRPSPKGLDATTFQNIHDFNELRERDSDTRVDLRLMYPDPPRDHHTLEIQQQALLREQQKRLNRIKMRRDAGADLDTICTDNAQGRRMPRDDTNDFLKNSLLESDSAFIGAYGETYPVIEDNAFPPPSQLPSARERRRNKLKGLDFDSSRLHTPQDGLSLKSISSVNVDQVRMRNEDRMRRLTEQQKKPTNTDDEGSLVDPDDIMRHLSDDGRNSAATEPWLRPGTSESLKRFMAEHLNEEQHKGPGKPGTFTWQGLSAAHA

name	Cspp1 (ENSMUSG00000056763) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	Vega_transcript:Cspp1-007 Vega_transcript:OTTMUST00000067948 Uniprot/SPTREMBL:F6QJJ3 GO:GO:0000922 GO:GO:0005654 GO:GO:0005813 GO:GO:0005819 GO:GO:0005874 GO:GO:0032467 GO:GO:0051781 MGI_trans_name:Cspp1-007 Vega_translation:178701 Vega_translation:OTTMUSP00000034272 goslim_goa:GO:0005575 goslim_goa:GO:0005622 goslim_goa:GO:0005623 goslim_goa:GO:0005634 goslim_goa:GO:0005654 goslim_goa:GO:0005815 goslim_goa:GO:0005856 goslim_goa:GO:0008150 goslim_goa:GO:0043226 goslim_goa:GO:0043234 OTTP:OTTMUSP00000034272 OTTT:OTTMUST00000067948 UniParc:UPI000164C592
definition	codon_start : 3 note : transcript_id=ENSMUST00000149214 protein_id : ENSMUSP00000119258 translation : XNHQEQQPRIEYGLSLPLGEDYEQKKHKLKEELRQDYRRYLTQKNFLSTGETDPSTLGVSLPIDERLSAKERLKLERNREYNQFLRGKAESTEKVRQVEKNIEPKSQRNKNPISQGKSDLPLQIQTAYTHSEGPWLSRQEEGLYRQLDGEIEL

name
type	misc_feature
link
xref
definition	note : contig AC102570.8 1..194371(-1)

name	Cops5 (ENSMUSG00000025917)
type	misc_RNA
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000072998 Vega_transcript:OTTMUST00000072998 MGI_trans_name:Cops5-003 OTTT:OTTMUST00000072998
definition	note : retained_intron note : transcript_id=ENSMUST00000139578

name	Cops5 (ENSMUSG00000025917)
type	misc_RNA
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000072997 Vega_transcript:OTTMUST00000072997 MGI_trans_name:Cops5-002 OTTT:OTTMUST00000072997
definition	note : retained_intron note : transcript_id=ENSMUST00000150509

name	Cops5 (ENSMUSG00000025917)
type	misc_RNA
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000118984 Vega_transcript:OTTMUST00000118984 MGI_trans_name:Cops5-004 OTTT:OTTMUST00000118984
definition	note : retained_intron note : transcript_id=ENSMUST00000191296

name	Cspp1 (ENSMUSG00000056763)
type	misc_RNA
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000118985 Vega_transcript:OTTMUST00000118985 UCSC:uc056ycf.1 MGI_trans_name:Cspp1-016 OTTT:OTTMUST00000118985
definition	note : retained_intron note : transcript_id=ENSMUST00000190610

name	Cspp1 (ENSMUSG00000056763)
type	misc_RNA
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000067776 Vega_transcript:OTTMUST00000067776 MGI_trans_name:Cspp1-002 OTTT:OTTMUST00000067776
definition	note : retained_intron note : transcript_id=ENSMUST00000143606

name	Cspp1 (ENSMUSG00000056763)
type	misc_RNA
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000118987 Vega_transcript:OTTMUST00000118987 MGI_trans_name:Cspp1-020 OTTT:OTTMUST00000118987
definition	note : retained_intron note : transcript_id=ENSMUST00000191360

name	Cspp1 (ENSMUSG00000056763)
type	misc_RNA
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000118988 Vega_transcript:OTTMUST00000118988 MGI_trans_name:Cspp1-021 OTTT:OTTMUST00000118988
definition	note : retained_intron note : transcript_id=ENSMUST00000191521

name	Cspp1 (ENSMUSG00000056763)
type	misc_RNA
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000118989 Vega_transcript:OTTMUST00000118989 MGI_trans_name:Cspp1-022 OTTT:OTTMUST00000118989
definition	note : retained_intron note : transcript_id=ENSMUST00000190063

name	Cspp1 (ENSMUSG00000056763)
type	misc_RNA
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000067950 Vega_transcript:OTTMUST00000067950 MGI_trans_name:Cspp1-009 OTTT:OTTMUST00000067950
definition	note : retained_intron note : transcript_id=ENSMUST00000134716

name	1700047N06Rik (ENSMUSG00000102356)
type	misc_RNA
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000118998 Vega_transcript:OTTMUST00000118998 Clone_based_vega_transcript:RP23-228G18.5-001 MGI_trans_name:1700047N06Rik-001 OTTT:OTTMUST00000118998
definition	note : TEC note : transcript_id=ENSMUST00000194474

Polymorphisms Report

Target Strain	MSMv4 JF1v3 KJRv1 SWNv1 CHDv1 NJLv1 BLG2v1 HMIv1 BFMv1 PGN2v1

Gene Symbol (Gene ID)	Cspp1 (ENSMUSG00000056763)
Transcript ID	ENSMUST00000117415

Reports
substitution
cSNPs	3
Insertion	26
Deletion	47
SNPs	-1kb 10033340(c.-11746A>G), 10033421(c.-11665A>G), 10033430(c.-11656G>C), 10033444(c.-11642A>C), 10033622(c.-11464C>T), 10033687(c.-11399A>G), 10033762(c.-11324A>G), 10034157(c.-10929C>T), 10034241(c.-10845C>A), 10034337(c.-10749C>T), 10034668(c.-10418C>A), 10034822(c.-10264A>T), 10034878(c.-10208G>A), 10034906(c.-10180G>A), 10035240(c.-9846G>A), 10035413(c.-9673G>A), 10035424(c.-9662G>C), 10035466(c.-9620T>C), 10035595(c.-9491A>G), 10035684(c.-9402A>T), 10035731(c.-9355C>T), 10035733(c.-9353C>T), 10035840(c.-9246C>T), 10036015(c.-9071C>A), 10036040(c.-9046C>T), 10036053(c.-9033C>T), 10036157(c.-8929T>C), 10036294(c.-8792T>C), 10036328(c.-8758C>T), 10036374(c.-8712T>C), 10036420(c.-8666T>C), 10036430(c.-8656G>C), 10036446(c.-8640G>A), 10036621(c.-8465C>T), 10036688(c.-8398C>T), 10036808(c.-8278C>T), 10036900(c.-8186A>G), 10036985(c.-8101C>T), 10037121(c.-7965T>A), 10037160(c.-7926T>C), 10037194(c.-7892C>G), 10037213(c.-7873G>C), 10037246(c.-7840A>G), 10037289(c.-7797T>C), 10037305(c.-7781A>C), 10037307(c.-7779A>G), 10037582(c.-7504A>T), 10038028(c.-7058G>C), 10038034(c.-7052C>T), 10038102(c.-6984G>C), 5'UTR CDS 10047432(c.108G>A), 10066691(c.752G>A), 10066713(c.774A>G), 3'UTR 10038325(c.-30A>G), 10066956(c.81T>C), INTRON 10038490(c.-11+146T>C), 10038516(c.-11+172A>G), 10038517(c.-11+173G>A), 10038557(c.-11+213G>C), 10038783(c.-11+439G>T), 10038797(c.-11+453T>A), 10038886(c.-11+542G>T), 10038935(c.-11+591A>C), 10038986(c.-11+642G>A), 10038994(c.-11+650T>C), 10039009(c.-11+665C>A), 10039152(c.-11+808C>T), 10039181(c.-11+837G>A), 10039359(c.-11+1015T>C), 10039456(c.-11+1112C>A), 10039555(c.-11+1211T>C), 10039587(c.-11+1243G>T), 10039626(c.-11+1282T>C), 10039712(c.-11+1368C>A), 10039825(c.-11+1481A>G), 10039840(c.-11+1496G>C), 10040262(c.-11+1918G>A), 10040330(c.-11+1986T>C), 10040357(c.-11+2013C>T), 10040400(c.-11+2056G>T), 10040527(c.-11+2183G>A), 10040529(c.-11+2185G>C), 10040575(c.-11+2231C>G), 10040625(c.-11+2281A>G), 10040716(c.-11+2372A>G), 10040891(c.-11+2547C>T), 10041050(c.-11+2706G>T), 10041220(c.-11+2876A>G), 10041313(c.-11+2969C>T), 10041491(c.-11+3147G>T), 10041532(c.-11+3188T>A), 10042128(c.-10-2948C>T), 10042129(c.-10-2947C>T), 10042330(c.-10-2746T>C), 10042372(c.-10-2704A>G), 10042379(c.-10-2697T>A), 10042387(c.-10-2689C>T), 10042778(c.-10-2298A>T), 10042798(c.-10-2278C>T), 10043142(c.-10-1934T>G), 10043145(c.-10-1931C>A), 10043163(c.-10-1913T>C), 10043210(c.-10-1866C>A), 10043307(c.-10-1769G>A), 10043360(c.-10-1716G>C), 10043416(c.-10-1660T>C), 10043486(c.-10-1590A>T), 10043551(c.-10-1525T>C), 10043607(c.-10-1469C>G), 10043623(c.-10-1453T>A), 10043820(c.-10-1256A>C), 10043857(c.-10-1219G>C), 10043944(c.-10-1132G>T), 10043995(c.-10-1081G>A), 10044039(c.-10-1037A>T), 10044218(c.-10-858T>C), 10044264(c.-10-812T>C), 10044265(c.-10-811C>T), 10044301(c.-10-775T>C), 10044381(c.-10-695T>C), 10044394(c.-10-682A>G), 10044410(c.-10-666T>G), 10044424(c.-10-652T>C), 10044439(c.-10-637C>T), 10044481(c.-10-595C>T), 10044517(c.-10-559A>T), 10044617(c.-10-459T>A), 10044649(c.-10-427A>T), 10044674(c.-10-402A>T), 10044703(c.-10-373T>C), 10044735(c.-10-341T>G), 10044740(c.-10-336G>A), 10044814(c.-10-262G>A), 10044875(c.-10-201A>G), 10044893(c.-10-183T>G), 10044896(c.-10-180T>A), 10045000(c.-10-76G>A), 10045203(c.99+19G>T), 10045206(c.99+22T>C), 10045208(c.99+24A>G), 10045225(c.99+41A>G), 10045246(c.99+62T>C), 10045300(c.99+116T>C), 10045342(c.99+158T>G), 10045402(c.99+218G>C), 10045419(c.99+235C>T), 10045564(c.99+380A>C), 10045581(c.99+397A>G), 10045585(c.99+401A>G), 10045589(c.99+405A>T), 10045601(c.99+417G>A), 10045638(c.99+454C>T), 10045726(c.99+542C>T), 10046011(c.99+827G>C), 10046082(c.99+898G>A), 10046144(c.99+960G>T), 10046323(c.100-1101A>G), 10046446(c.100-978G>A), 10046475(c.100-949G>A), 10047056(c.100-368G>A), 10047106(c.100-318C>T), 10047162(c.100-262C>T), 10047542(c.202+16C>T), 10047548(c.202+22A>G), 10047901(c.202+375C>T), 10048711(c.202+1185A>G), 10048959(c.202+1433G>A), 10048995(c.202+1469T>C), 10049267(c.202+1741T>C), 10049397(c.202+1871C>T), 10049436(c.202+1910G>A), 10049747(c.202+2221G>T), 10049771(c.202+2245G>A), 10050010(c.202+2484C>T), 10050450(c.202+2924C>T), 10050483(c.202+2957T>A), 10050518(c.202+2992A>G), 10050768(c.202+3242A>G), 10051046(c.202+3520G>T), 10051051(c.202+3525T>C), 10051057(c.202+3531A>G), 10051142(c.202+3616G>A), 10051215(c.202+3689G>C), 10051670(c.202+4144T>C), 10051789(c.202+4263T>C), 10052104(c.202+4578A>C), 10052961(c.202+5435C>T), 10053068(c.202+5542G>C), 10053093(c.202+5567C>A), 10053116(c.202+5590C>T), 10053162(c.203-5558G>A), 10053165(c.203-5555G>A), 10054291(c.203-4429C>T), 10054406(c.203-4314A>T), 10054412(c.203-4308A>G), 10054463(c.203-4257T>C), 10054547(c.203-4173A>C), 10054562(c.203-4158T>G), 10054683(c.203-4037C>T), 10054707(c.203-4013G>T), 10054747(c.203-3973C>T), 10054824(c.203-3896T>C), 10054869(c.203-3851T>A), 10054896(c.203-3824C>A), 10054997(c.203-3723G>A), 10055011(c.203-3709A>C), 10055133(c.203-3587G>C), 10055346(c.203-3374G>A), 10055429(c.203-3291C>T), 10055484(c.203-3236T>G), 10055545(c.203-3175A>G), 10055682(c.203-3038C>T), 10055711(c.203-3009C>T), 10055762(c.203-2958T>C), 10055800(c.203-2920C>G), 10055934(c.203-2786T>G), 10055940(c.203-2780A>G), 10055964(c.203-2756T>C), 10055968(c.203-2752A>G), 10055969(c.203-2751C>T), 10056043(c.203-2677C>A), 10056091(c.203-2629G>A), 10056095(c.203-2625G>C), 10056097(c.203-2623T>C), 10056122(c.203-2598T>C), 10056126(c.203-2594C>G), 10056183(c.203-2537C>A), 10056205(c.203-2515C>T), 10056231(c.203-2489A>G), 10056350(c.203-2370C>A), 10056443(c.203-2277A>G), 10056618(c.203-2102A>G), 10056676(c.203-2044A>G), 10056724(c.203-1996G>A), 10056750(c.203-1970A>G), 10056790(c.203-1930A>C), 10056947(c.203-1773C>T), 10056984(c.203-1736T>C), 10057053(c.203-1667A>T), 10057106(c.203-1614T>C), 10057112(c.203-1608G>T), 10057141(c.203-1579G>A), 10057455(c.203-1265T>A), 10057485(c.203-1235C>G), 10057602(c.203-1118T>C), 10057855(c.203-865A>G), 10057900(c.203-820A>G), 10058071(c.203-649G>T), 10058229(c.203-491C>T), 10058327(c.203-393C>T), 10058407(c.203-313T>G), 10058554(c.203-166T>G), 10058640(c.203-80C>A), 10059025(c.306+202C>G), 10059030(c.306+207T>C), 10059053(c.306+230A>C), 10059069(c.306+246A>G), 10059079(c.306+256A>C), 10059091(c.306+268T>G), 10059098(c.306+275A>C), 10059147(c.306+324A>C), 10059153(c.306+330A>G), 10059168(c.306+345G>C), 10059199(c.306+376A>C), 10059202(c.306+379A>C), 10059987(c.306+1164C>T), 10060157(c.306+1334T>G), 10060514(c.306+1691A>G), 10060556(c.306+1733C>G), 10060806(c.306+1983C>T), 10060901(c.306+2078A>C), 10061043(c.306+2220A>G), 10061171(c.306+2348A>G), 10061563(c.306+2740C>T), 10061575(c.306+2752T>A), 10061583(c.307-2750T>G), 10061882(c.307-2451A>G), 10061942(c.307-2391A>G), 10061966(c.307-2367A>T), 10061974(c.307-2359C>G), 10062019(c.307-2314C>A), 10062061(c.307-2272A>G), 10062119(c.307-2214A>G), 10062178(c.307-2155A>G), 10062210(c.307-2123C>G), 10062238(c.307-2095G>A), 10062263(c.307-2070T>A), 10062270(c.307-2063T>C), 10062460(c.307-1873T>G), 10062860(c.307-1473T>C), 10063024(c.307-1309C>T), 10063522(c.307-811T>C), 10063846(c.307-487A>C), 10064256(c.307-77G>A), 10064297(c.307-36A>G), 10064538(c.387+125T>C), 10065013(c.388-310G>A), 10065075(c.388-248A>C), 10065833(c.486+412A>T), 10066217(c.487-209C>T), +1kb 10067305(c.430C>A), 10067323(c.448G>C), 10067388(c.513T>G), 10068630(c.1755A>G), 10068655(c.1780T>C), 10069186(c.2311T>C), 10069281(c.2406T>A), 10071028(c.4153C>A), 10071179(c.4304C>T), 10071318(c.4443T>C), 10071402(c.4527G>T), 10071404(c.4529G>A), 10071413(c.4538G>T), 10071450(c.4575A>G), 10071536(c.4661T>C), 10071984(c.5109C>A), 10072098(c.5223G>C),
Insertions	-1kb 10035813 (c.-9273_-9272insGAGGCAGGC), 10037130 (c.-7956_-7955insA), 5'UTR CDS 3'UTR INTRON 10038448 (c.-11+108dupT), 10038774 (c.-11+430dupT), 10039101 (c.-11+758_-11+760dupCTT), 10039721 (c.-11+1377_-11+1378insG), 10039725 (c.-11+1385dupG), 10040401 (c.-11+2057_-11+2058insA), 10042916 (c.-10-2160_-10-2159insC), 10044558 (c.-10-519_-10-518dupTT), 10045062 (c.-10-5_-10-4dupTT), 10046044 (c.99+862_99+863dupTA), 10046657 (c.100-766_100-765insACTC), 10049550 (c.202+2066_202+2067dupGA), 10053134 (c.203-5584dupT), 10053901 (c.203-4818_203-4817insCA), 10054252 (c.203-4467_203-4466insTA), 10055586 (c.203-3128dupT), 10057304 (c.203-1413_203-1412insATTTTAT), 10057637 (c.203-1085_203-1083dupCTT), 10058408 (c.203-312_203-311insT), 10062076 (c.307-2257_307-2256insC), 10062151 (c.307-2182_307-2181insC), 10062326 (c.307-2007_307-2006insG), 10064272 (c.307-58dupA), +1kb 10068806 (c.1931_1932insG),
Deletions	-1kb 10033810 (c.-11275_-11270delTTTTTT), 10034579 (c.-10506_-10504delTTG), 10034711 (c.-10374_-10373delTT), 10035785 (c.-9300_-9297delAGAG), 10035910 (c.-9175_-9174delAA), 10036577 (c.-8508_-8507delAA), 10037233 (c.-7852_-7849delCCAA), 10037334 (c.-7751delA), 10037354 (c.-7731_-7728delAACT), 5'UTR CDS 3'UTR INTRON 10038805 (c.-11+467_-11+469delATC), 10038810 (c.-11+467_-11+469delATC), 10039471 (c.-11+1129_-11+1136delCGAAACAT), 10039649 (c.-11+1306_-11+1313delCAGCAGCG), 10041352 (c.-11+3011delC), 10041462 (c.-11+3120_-11+3125delTTGTTT), 10041940 (c.-10-3133delC), 10042460 (c.-10-2606_-10-2603delATAG), 10042968 (c.-10-2107_-10-2104delCCCC), 10043567 (c.-10-1504_-10-1502delTTA), 10043937 (c.-10-1137_-10-1132delACATTG), 10044331 (c.-10-741delT), 10044564 (c.-10-511_-10-509delAGG), 10045372 (c.99+192delA), 10046485 (c.100-938_100-930delCAAAGGGAT), 10049952 (c.202+2436delA), 10051335 (c.202+3810_202+3811delGA), 10051374 (c.202+3857delT), 10051381 (c.202+3856_202+3857delTT), 10054992 (c.203-3727_203-3726delAT), 10055868 (c.203-2838_203-2836delCTC), 10057289 (c.203-1430_203-1429delAT), 10057649 (c.203-1070_203-1067delAGAG), 10057784 (c.203-933delA), 10060464 (c.306+1649delA), 10061556 (c.306+2735delT), 10061778 (c.307-2554delA), 10061854 (c.307-2478delC), 10064981 (c.388-341_388-340delCT), 10065094 (c.388-228_388-227delTG), 10065171 (c.388-151delC), 10066291 (c.487-130_487-129delTT), +1kb 10067780 (c.906_909delTTTA), 10069372 (c.2498_2499delTG), 10070681 (c.3807_3809delACA), 10071069 (c.4195delT), 10071342 (c.4468_4471delCTGT), 10071919 (c.5045_*5046delAA),
coding sequence substitutions
premature termination by the nucleotide substitution	0
synonymous num	2
non-synonymous num	1
synonymous substitutions	10047432 (p.Ala36Ala), 10066713 (p.Gln258Gln),
non-synonymous substitutions	10066691 (p.Gly251Glu),
B6 transcript (ENSMUST00000117415)	MADSLDEFIEEQKAKLAKDKAELESDPPYMEMKGKASEKLSENSKILISMAKENIPPSSQ QQPKGPLGIEYGLSLPLGEDYEQKKHKLKEELRQDYRRYLTQKNFLSTGETDPSTLGVSL PIDERLSAKERLKLERNREYNQFLRGKAESTEKVRQVEKNIEPKSQRNKNPISQGKSDLP LQIQTAYTHSEGPWLSRQEEGLYRQLDGEIELRSRRPLKQTKEEVGISGAEHPSLSGSAG VPERRARRANGERVLDRQHCRADRDPGVSEDMDERFRFESDFDRRLLRVYTNGRYLHLHF SSLYLLNTGVL*
MSMv4 transcript	MADSLDEFIEEQKAKLAKDKAELESDPPYMEMKGKASEKLSENSKILISMAKENIPPSSQ QQPKGPLGIEYGLSLPLGEDYEQKKHKLKEELRQDYRRYLTQKNFLSTGETDPSTLGVSL PIDERLSAKERLKLERNREYNQFLRGKAESTEKVRQVEKNIEPKSQRNKNPISQGKSDLP LQIQTAYTHSEGPWLSRQEEGLYRQLDGEIELRSRRPLKQTKEEVGISGAEHPSLSGSAG VPERRARRANEERVLDRQHCRADRDPGVSEDMDERFRFESDFDRRLLRVYTNGRYLHLHF SSLYLLNTGVL*
homology	99.68 (312 / 312)

Exon Detail Report

Target Strain	MSMv4 JF1v3 KJRv1 SWNv1 CHDv1 NJLv1 BLG2v1 HMIv1 BFMv1 PGN2v1

Gene Symbol (Gene ID)	Cspp1 (ENSMUSG00000056763)
Transcript ID	ENSMUST00000117415


..........ATTTTTTTTTTTTTTTTAAATCAATGCCCTGCTCATTCGATTTCTGAAAA
CAGCCACGCTCTTCAGTTTGGGAATCTACTGAAGGCTGCAACTAACTGCATGTAGCCACC
AGGTTCAAGGCAGAGTGTGTGAGATTTACAAAAATAATCATGTTGACAAAAGTCGCACCC
CAAGTCAGCCCTTTACACGCCCTGAAGGCAAGAAACTTTCTAAAAGGGGAATCGAAGCAG
GCCCTAGAGGACAGGTAAGGCTCTACTGACAAGGCAGACTAAGGCCACTGTGGCCAATAT
TCGGTCGACGCCCCACAGAAAGCCAAGCTCTCCACACCCTTCATCTCCCACCCCTCGCGG
GTCTCTCACAGTCCCGCCATCCCTGCCCTCCCCTGCGTCTCGCCAGGGACCTCCTCACTC
CTTAGTCCAGGGTTTCGCCGCCAGGATTTCTTGTTGTTGTTTTTTGTCATATTTGTAGAT
TTCATCGATACTCTGCGCTTCCTGCATGTTGTTGGCCAATTCCCAGGTTTTCTGGGCCAT
ACCACTCCCGGAAGCTGCCATGGCCGAGGCACCGGAGAAGCTGTCGCTCCACAATCAAGA
TGCAACTTTCTTCTACTGGGCCTCAGCGTGCGGGCTTTGGACCTTCCCCACCAGGGTGCA
CACTCACTAGACTCTCAAGGCAGCCATGACACTTGAGACCGGAGGTGACGTTGGTCCAGA
CCATTCGCGCGCTGGGGCGCGGCGGCGGCGCAGCGACATAGAAAACACTTCCTTAGCGTT
GGTTCGGCTCGGCTCGGCTAAGATCAGTCTTGCCGGTGAAACGAGAACATGCTGGCTCGG
AAATCCGTTCCTGTGAACTGCGAGGGACGCAAAGCCTCGGTGTGGGAATGGTACAGCCTT
TCGCGCCGGAAGGCGGGACTATTGGCCTGCCAGGAAGGAGTCGGCCGGCTCGGCTCGTAC
TGCGCAGACTCAGATGCCACCATATTGTGTGTAGGAGGAAACTTGAGTTT
GGGGAATTATGTTTATGTGAGTGTAGGTGCTTCAAACGAAATAAATTGTTTGGAATACTAAATGTCTCTAGAGAAACAGAGGT
GTAAGTATCTCCGGATTATTGGTTT..........CTCACTGAAGACTTTTTTTTTTCAG
AATCTACAAAATGGCAGATAGCTTGGATGAATTTATTGAAGAGCAAAAAGCGAAACTGGCCAAAGACAAAGCAGAATTGGAAAGTGATCCACCGTACATGGAGATGAAG
GCAAGATTAGTAATTGTCTTGCAGT..........TGATTTGTAAATATGTCTTTTCCAG
GGAAAGGCATCAGAGAAACTCTCTGAAAACAGTAAAATATTAATCTCTATGGCTAAGGAGAACATTCCACCAAGCAGCCAACAACAGCCCAAGGGACCCTTAG
GTATGGTACTGTATGTGTGGAGCTA..........CGACTTAAGCTGTTTTCTTTTTTAG
GAATTGAATATGGCTTAAGTTTACCGCTTGGAGAAGATTATGAACAGAAGAAACATAAATTAAAAGAAGAATTGAGGCAAGATTATAGACGATATCTTACTCAG
GTAAGTTGTTCTGTTAGTGAGTTGT..........TATATTTTAATGTGCATATATACAG
AAAAATTTCCTATCTACTGGTGAAACAGACCCATCTACTCTGGGAGTTTCTCTTCCCATTGATGAGCGGTTATCTGCCAAG
GTAGGTGGATAGGAATAAGAGTTTC..........ATTGTTTTTCAATTTTTTTGTAAAG
GAAAGATTGAAACTTGAACGCAACCGAGAATACAATCAGTTTCTCAGGGGTAAGGCAGAATCCACAGAAAAAGTCAGACAGGTAGAAAAGAATATTGAG
GTATGTTTTACTTTTATAAAGTGAT..........CTTTTTTTCTTTTTTAATTCAACAG
CCTAAGAGTCAAAGAAATAAAAACCCTATTAGTCAAGGTAAATCTGATCTACCTTTACAAATACAGACTGCATACACACATTCAGAGGGACCCTGGCTAAGCCGGCAAGAGGAGGGCCTGTACCGACAGCTAGATGGTGAAATTGAATTAAGGAGCAGAAGACCGCTTAAACAAACAAAGGAAGAAGTAGGCATTTCTGGTGCAGAACATCCAAGCCTTTCTGGCAGCGCTGGTGTCCCAGAGAGAAGAGCCCGCAGGGCTAACGAGGAGCGGGTGCTTGACAGACAGCATTGCAGAGCCGACCGAGACCCTGGTGTGAGTGAAGACATGGACGAGAGGTTTAGATTTGAAAGTGATTTTGATAGAAGACTTTTGAGAGTGTATACAAATGGCAGGTATTTACATCTTCACTTTTCTTCTCTGTATTTACTTAATACTGGTGTTTTATAGTTACATTAGGGAAAAGGAGCTTTATTTGATTTACCGTATTTAATTTAGTTATACTGTTTTGTGAAACACCATTTTATGTGCCATTGAAGGGGGGAGATAAAGAAAACACTCTAAATGGGGACCTTGGTAAAGCTAGAAAGTGGTAAAGTGTATCCCCTTAATCTAAAAGTGAATGGAAACATTCTTAAAGAGGGGATTTCTTGTCTCAGCTTAACCAAGTAGGAGAGTAAAAAAAAAAAAAAA
CCCAAAAAACCCCCAAATTGTGCATGTGAATTTAAATTCTAAAGCAGCAATGGATTCAGA
TCCACAGTCTGGATTCCTGTTGCCAGTGGCTTCCAAAGAAATCTCAGGTTGTTTTGGATC
ATAGCTTCCCAGATGACTGACAGGGATAAAACCCAGTTCCCTACGCAGTAAGTTAAAACT
AGGTTGATAGGCATCCTAATCTTACATGTTAAAATGTATGTAAAAAGGGCCATTGTAACA
TAGATGAAATGCAGTTTGTGCCTTTACTGGTTGTACATATTAAGTATCTTTATGTTTTTT
AAATGGACTTTTATGTAATTGAAATGACATTAACTTTTCATAGTCATATTTTCCAGTGTT
TTTTTACTTCCTTTAACTATTTTGTGATGCTGTTTGGAACTTCTTAACTATAAGTCGTTG
TTTTTATTTACCATATTACATAACTTGATATATGTTTTCCTAACTATTAGCTATAGAAAT
ACTATAGAGCCTACATTTGTCATTGACCTGCTAACTTGAAAGATTACTTGTAAATTTTGG
GGCCTGTTTTGTTTAATAGCCTGAATATTTAATTTTTTAGTATTTTAGAAAATATTATCA
GGAATTAATGTTATACTGTCAGTATTTTGATTACTAATAACAATACAAAGATAACATCTG
TCTTTATTCTGTATCTTAGTTTAGATAATTTAAATTCAAATTTAATATCAAGAATTAGAA
ATGTGGATCGTGTACTCTAGTTTCTTTGAGCTGAATCTTAATTGTTTGTAGTTCAGGAAA
TGCTCCAAATCCTTTAATAATATCTTATATTTAAAGTTTATTAAAAGACCTCTCAGTTCT
CAGTTTGGGAACCACAGCACTCCTGGGATCTTGATGGTGTCTTCTCTGTACCTGAGAATT
TTATAGAACTTTTATTTCCTTTTTATGATATTTACCTCCAGAATATAATGAAAACATAAC
TTTAAGTTTGGAATTTTATGAGACTTTCGACAATTGATGC..........

No.	Exon / Intron	Start	End	Start Phase	End Phase	Length	Sequence
	5' upstream sequence						..........ATTTTTTTTTTTTTTTTAAATCAATGCCCTGCTCATTCGATTTCTGAAAA CAGCCACGCTCTTCAGTTTGGGAATCTACTGAAGGCTGCAACTAACTGCATGTAGCCACC AGGTTCAAGGCAGAGTGTGTGAGATTTACAAAAATAATCATGTTGACAAAAGTCGCACCC CAAGTCAGCCCTTTACACGCCCTGAAGGCAAGAAACTTTCTAAAAGGGGAATCGAAGCAG GCCCTAGAGGACAGGTAAGGCTCTACTGACAAGGCAGACTAAGGCCACTGTGGCCAATAT TCGGTCGACGCCCCACAGAAAGCCAAGCTCTCCACACCCTTCATCTCCCACCCCTCGCGG GTCTCTCACAGTCCCGCCATCCCTGCCCTCCCCTGCGTCTCGCCAGGGACCTCCTCACTC CTTAGTCCAGGGTTTCGCCGCCAGGATTTCTTGTTGTTGTTTTTTGTCATATTTGTAGAT TTCATCGATACTCTGCGCTTCCTGCATGTTGTTGGCCAATTCCCAGGTTTTCTGGGCCAT ACCACTCCCGGAAGCTGCCATGGCCGAGGCACCGGAGAAGCTGTCGCTCCACAATCAAGA TGCAACTTTCTTCTACTGGGCCTCAGCGTGCGGGCTTTGGACCTTCCCCACCAGGGTGCA CACTCACTAGACTCTCAAGGCAGCCATGACACTTGAGACCGGAGGTGACGTTGGTCCAGA CCATTCGCGCGCTGGGGCGCGGCGGCGGCGCAGCGACATAGAAAACACTTCCTTAGCGTT GGTTCGGCTCGGCTCGGCTAAGATCAGTCTTGCCGGTGAAACGAGAACATGCTGGCTCGG AAATCCGTTCCTGTGAACTGCGAGGGACGCAAAGCCTCGGTGTGGGAATGGTACAGCCTT TCGCGCCGGAAGGCGGGACTATTGGCCTGCCAGGAAGGAGTCGGCCGGCTCGGCTCGTAC TGCGCAGACTCAGATGCCACCATATTGTGTGTAGGAGGAAACTTGAGTTT
1	EXON 1	10038262	10038344	-	-	83	GGGGAATTATGTTTATGTGAGTGTAGGTGCTTCAAACGAAATAAATTGTTTGGAATACTA AATGTCTCTAGAGAAACAGAGGT
	INTRON 1 - 2	10038345	10045075			6731	GTAAGTATCTCCGGATTATTGGTTT..........CTCACTGAAGACTTTTTTTTTTCAG
2	EXON 2	10045076	10045184	-	0	109	AATCTACAAAATGGCAGATAGCTTGGATGAATTTATTGAAGAGCAAAAAGCGAAACTGGC CAAAGACAAAGCAGAATTGGAAAGTGATCCACCGTACATGGAGATGAAG
	INTRON 2 - 3	10045185	10047423			2239	GCAAGATTAGTAATTGTCTTGCAGT..........TGATTTGTAAATATGTCTTTTCCAG
3	EXON 3	10047424	10047526	0	1	103	GGAAAGGCATCAGAGAAACTCTCTGAAAACAGTAAAATATTAATCTCTATGGCTAAGGAG AACATTCCACCAAGCAGCCAACAACAGCCCAAGGGACCCTTAG
	INTRON 3 - 4	10047527	10058719			11193	GTATGGTACTGTATGTGTGGAGCTA..........CGACTTAAGCTGTTTTCTTTTTTAG
4	EXON 4	10058720	10058823	1	0	104	GAATTGAATATGGCTTAAGTTTACCGCTTGGAGAAGATTATGAACAGAAGAAACATAAAT TAAAAGAAGAATTGAGGCAAGATTATAGACGATATCTTACTCAG
	INTRON 4 - 5	10058824	10064332			5509	GTAAGTTGTTCTGTTAGTGAGTTGT..........TATATTTTAATGTGCATATATACAG
5	EXON 5	10064333	10064413	0	0	81	AAAAATTTCCTATCTACTGGTGAAACAGACCCATCTACTCTGGGAGTTTCTCTTCCCATT GATGAGCGGTTATCTGCCAAG
	INTRON 5 - 6	10064414	10065322			909	GTAGGTGGATAGGAATAAGAGTTTC..........ATTGTTTTTCAATTTTTTTGTAAAG
6	EXON 6	10065323	10065421	0	0	99	GAAAGATTGAAACTTGAACGCAACCGAGAATACAATCAGTTTCTCAGGGGTAAGGCAGAA TCCACAGAAAAAGTCAGACAGGTAGAAAAGAATATTGAG
	INTRON 6 - 7	10065422	10066425			1004	GTATGTTTTACTTTTATAAAGTGAT..........CTTTTTTTCTTTTTTAATTCAACAG
7	EXON 7	10066426	10067118	0	-	693	CCTAAGAGTCAAAGAAATAAAAACCCTATTAGTCAAGGTAAATCTGATCTACCTTTACAA ATACAGACTGCATACACACATTCAGAGGGACCCTGGCTAAGCCGGCAAGAGGAGGGCCTG TACCGACAGCTAGATGGTGAAATTGAATTAAGGAGCAGAAGACCGCTTAAACAAACAAAG GAAGAAGTAGGCATTTCTGGTGCAGAACATCCAAGCCTTTCTGGCAGCGCTGGTGTCCCA GAGAGAAGAGCCCGCAGGGCTAACGAGGAGCGGGTGCTTGACAGACAGCATTGCAGAGCC GACCGAGACCCTGGTGTGAGTGAAGACATGGACGAGAGGTTTAGATTTGAAAGTGATTTT GATAGAAGACTTTTGAGAGTGTATACAAATGGCAGGTATTTACATCTTCACTTTTCTTCT CTGTATTTACTTAATACTGGTGTTTTATAGTTACATTAGGGAAAAGGAGCTTTATTTGAT TTACCGTATTTAATTTAGTTATACTGTTTTGTGAAACACCATTTTATGTGCCATTGAAGG GGGGAGATAAAGAAAACACTCTAAATGGGGACCTTGGTAAAGCTAGAAAGTGGTAAAGTG TATCCCCTTAATCTAAAAGTGAATGGAAACATTCTTAAAGAGGGGATTTCTTGTCTCAGC TTAACCAAGTAGGAGAGTAAAAAAAAAAAAAAA
	3' upstream sequence						CCCAAAAAACCCCCAAATTGTGCATGTGAATTTAAATTCTAAAGCAGCAATGGATTCAGA TCCACAGTCTGGATTCCTGTTGCCAGTGGCTTCCAAAGAAATCTCAGGTTGTTTTGGATC ATAGCTTCCCAGATGACTGACAGGGATAAAACCCAGTTCCCTACGCAGTAAGTTAAAACT AGGTTGATAGGCATCCTAATCTTACATGTTAAAATGTATGTAAAAAGGGCCATTGTAACA TAGATGAAATGCAGTTTGTGCCTTTACTGGTTGTACATATTAAGTATCTTTATGTTTTTT AAATGGACTTTTATGTAATTGAAATGACATTAACTTTTCATAGTCATATTTTCCAGTGTT TTTTTACTTCCTTTAACTATTTTGTGATGCTGTTTGGAACTTCTTAACTATAAGTCGTTG TTTTTATTTACCATATTACATAACTTGATATATGTTTTCCTAACTATTAGCTATAGAAAT ACTATAGAGCCTACATTTGTCATTGACCTGCTAACTTGAAAGATTACTTGTAAATTTTGG GGCCTGTTTTGTTTAATAGCCTGAATATTTAATTTTTTAGTATTTTAGAAAATATTATCA GGAATTAATGTTATACTGTCAGTATTTTGATTACTAATAACAATACAAAGATAACATCTG TCTTTATTCTGTATCTTAGTTTAGATAATTTAAATTCAAATTTAATATCAAGAATTAGAA ATGTGGATCGTGTACTCTAGTTTCTTTGAGCTGAATCTTAATTGTTTGTAGTTCAGGAAA TGCTCCAAATCCTTTAATAATATCTTATATTTAAAGTTTATTAAAAGACCTCTCAGTTCT CAGTTTGGGAACCACAGCACTCCTGGGATCTTGATGGTGTCTTCTCTGTACCTGAGAATT TTATAGAACTTTTATTTCCTTTTTATGATATTTACCTCCAGAATATAATGAAAACATAAC TTTAAGTTTGGAATTTTATGAGACTTTCGACAATTGATGC..........

Sequence Detail Report

Gene Symbol (Gene ID)	Cspp1 (ENSMUSG00000056763)
Transcript ID	ENSMUST00000117415

		SNP Information
Strain :
Sequence Retrieve :
Exon translate : CDS Start ( 1 ) - End ( 312 ) -
Strand :	forward reverse
Show sequence :	nucleotide amino acid
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