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Target CDS Information

Gene Symbol (Gene ID) Stau2 (ENSMUSG00000025920)
Cross Reference
EMBL AC115952, AC116695, AC162448, ...show all
GO GO:0003725, GO:0016020, GO:0044822
goslim_goa GO:0003674, GO:0003723, GO:0005575
MGI_trans_name Stau2-005
OTTP OTTMUSP00000044458
OTTT OTTMUST00000082853
UniParc UPI0001889EBF
Uniprot/SPTREMBL D6RGR9
Vega_transcript OTTMUST00000082853, Stau2-005
Vega_translation 178770, OTTMUSP00000044458
Definition protein_id:ENSMUSP00000122116
translation:
MLQINQMFSVQLSLGEQTWESEGSSIKKAQQAVANKALTESTLPKPVQKPPKSNVNNNPG
SITPTVELNGLAMKRGEPAIYRPLDPKPFPNYRANYNFRGMYNQRGICKTTH

Chromosome 1
Length
Position(start - end)
81725
16427633 - 16509359
Orient to Chromosome minus
Link Location : (1:16427633-16509359)
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Detail Map


 

Report

Polymorphisms Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Stau2 (ENSMUSG00000025920)
Transcript ID ENSMUST00000127420
Reports
substitution
cSNPs2
Insertion86
Deletion100
SNPs
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
Insertions
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
Deletions
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
coding sequence substitutions
premature termination by the nucleotide substitution0
synonymous num2
non-synonymous num0
synonymous substitutions 16440376 (p.Lys87Lys), 16463087 (p.Thr42Thr),
non-synonymous substitutions
B6 transcript
(ENSMUST00000127420)
MLQINQMFSVQLSLGEQTWESEGSSIKKAQQAVANKALTESTLPKPVQKPPKSNVNNNPG
SITPTVELNGLAMKRGEPAIYRPLDPKPFPNYRANYNFRGMYNQRGICKTTH*
MSMv4 transcript
MLQINQMFSVQLSLGEQTWESEGSSIKKAQQAVANKALTESTLPKPVQKPPKSNVNNNPG
SITPTVELNGLAMKRGEPAIYRPLDPKPFPNYRANYNFRGMYNQRGICKTTH*
homology100.00 (113 / 113)

Exon Detail Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Stau2 (ENSMUSG00000025920)
Transcript ID ENSMUST00000127420
No. Exon / Intron Start End Start Phase End Phase Length Sequence
5' upstream sequence
..........TTTTTTTTTTTTTGGTACGGGCACACAACTTTAATATATTTATTATTCAT
TTTTTCCTGATGAATGATGTGGGCCGTAGAGCAGGTGATGGGGGCTCGCTTGCGCTGCTT
GCTACCCTCCTCCCCCTTCTTCCTCCTCCAGTCTAGAAAGGTGCAGGATCCGCCGAATCC
TACGTCGCACCGCAGTGGAACGGACGCGGGATGGTCGCGCGTCCCCAGCTAGGCAGAGGC
GGGCAGTCAGCGAGCCGGGAAAGGTAGGAGCAGAGCGTCGGGGACAGGCTGCTAGAGAGC
CCAGGGGCAGCGGGTGCGGGAGAGGCTGAGCCGCCGGTGCTGGAGCACCTTCGCAGTTGC
GGGCCGGGCGCCCTCAGCGTGCTCCTGCAGCAGCTCCCGGGACGGGCCCCGGCGCGGCCC
GAGACCCCAGGCCTAAGCCCCGCAGCGCCCCGGGATGCGGGGGTCCCAGAAGCCGCCAGG
GGGCGGGAACGGCGCGGCGAACAATGGCCGCTCGACCGCGAAGGGAGGCGGGGAGAGGTG
GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA
GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACAGAGAGACA
GAGAGAGACACAGAGACACAGAGACACAGAGACACAGAGAGAGAGACAGAGACACAGAGA
GAGAGACAGACAGACAGAGAGACACAGAGAGAGGAGAGAGAGAGACAGAGAAAGAGAGGG
GGGAGAGACACAGAGAGAGAGAGACAGACAGAGAGAGGAGAGAGACAGAGAAAGAAAGGG
GAGAGAGACAGAGAGACAGAGCGAGCTGGAGAGAGAGAGCGCGAGAGAGAGCTGGCGCGG
GGGCGCGCGGCGTGGCGCGGGCGCGGCGGCGCAGGCGGGGGCGCGCGGCGCGGGCCCGGG
AGGGCGCGGCGGGAGCGCAGGGCGGCAGGCGGAGGCGGGGGGCGGGAGCC
1 EXON 1 16519173 16519253 - - 81
GAGGAGGGAGCAGGCGGCGTCGGCGGAGCTCTGGAGCGCTCGCCCATGTGGAGCCGTCTG
CCGGGCGTCCGTGGCCCGCAG
INTRON 1 - 2 16509409 16519172 9764
GTAAATCCTGGTGCGAGCGGCGCCG..........TTATTTCTTTGTTTTCATTTTCCAG
2 EXON 2 16509342 16509408 - 0 67
TTTTGTGGAGCTGTGAGGGATACGGAAGTTTGATCAATATTGTCTTAACATGCTTCAGAT
AAATCAG
INTRON 2 - 3 16463195 16509341 46147
GTGAGTATGATTAAGGCGTGTCTTA..........GTTTTCTCTATCTGGTCTTTCCAAG
3 EXON 3 16463035 16463194 0 1 160
ATGTTTTCGGTGCAGCTGAGTCTTGGCGAGCAGACATGGGAATCCGAAGGGAGCAGTATA
AAGAAGGCCCAACAAGCTGTTGCTAACAAAGCTTTGACTGAATCTACCCTTCCCAAACCA
GTTCAGAAACCACCTAAAAGTAATGTCAATAATAACCCAG
INTRON 3 - 4 16440459 16463034 22576
GTATGGCATTGGTTTGTTTCCTTCC..........GTGTATCTCTAATGTTTTTAAACAG
4 EXON 4 16440323 16440458 1 2 136
GTAGTATAACTCCAACTGTGGAACTGAATGGGCTCGCTATGAAAAGGGGAGAGCCTGCCA
TCTACAGGCCACTAGATCCAAAACCATTCCCAAATTATAGAGCTAACTACAACTTCCGGG
GCATGTACAATCAGAG
INTRON 4 - 5 16427658 16440322 12665
GTTTGTATGTCTTCTTTGGTTTTGT..........GTTTAGAAAGTTTTTTCTTTTCTAG
5 EXON 5 16427546 16427657 2 - 112
AGGTATCTGTAAGACCACACATTAGGTAAGCTTCATCAGAAAGCTCATCTTGGCCGGAGC
ACCTGGAGGAGCCATCTTGGTTTCCGGTTCCCACCGAGACAAGTTTGCACAG
INTRON 5 - 6 16394211 16427545 33335
GTGAGACTGAGGACTACAGAAGCGA..........TAATGCTTGTGCTCTCTTTCTATAG
6 EXON 6 16394051 16394210 - - 160
GTATCATTGCCCAATGCCCAAGATCTTTTATGTTCAGTTAACTGTAGGAAATAATGAATT
CTTTGGTGAAGGGAAGACTCGACAAGCTGCCAGACACAATGCTGCGATGAAAGCGCTTCA
AGCCCTACAGAATGAGCCAATTCCAGAAAAGTCTCCCCAG
INTRON 6 - 7 16392625 16394050 1426
GTGTGGCCCTGATGAGTGCGGCATT..........TTTTTTGCTTTTTGTTTTTACTTAG
7 EXON 7 16392517 16392624 - - 108
AATGGTGAATCAGGAAAAGAAATGGATGACGATAAAGATGCAAATAAATCTGAAATAAGC
TTAGTGTTTGAGATTGCGCTGAAGAGAAATATGCCTGTCAGTTTTGAG
INTRON 7 - 8 16390034 16392516 2483
GTATGTGTTCCTGTGCTTCTCTTTG..........TTAATATTTTGCTTGCATTTAATAG
8 EXON 8 16389821 16390033 - - 213
GTTATTAAAGAAAGTGGACCACCACATATGAAGAGTTTTGTAACTCGGGTGTCAGTGGGA
GAATTTTCTGCAGAAGGAGAGGGAAATAGCAAAAAACTCTCCAAGAAGCGTGCCGCAACC
ACTGTCTTACAGGAGCTTAAAAAACTCCCACCTCTTCCTGTGGTAGAGAAGCCAAAACTA
TTTTTTAAAAAACGCCCTAAAACAATAGTAAAG
INTRON 8 - 9 16374812 16389820 15009
GTAAGCATATACTTGTGACTATCCA..........TTCTGACGCTTTTCTTATGTTTTAG
9 EXON 9 16374674 16374811 - - 138
GCTGGACCCGACTATGGTCAAGGAATGAACCCCATTAGCCGCCTGGCTCAGATCCAGCAA
GCCAGAAAGGAAAAGGAGCCTGATTACATCCTACTCTCAGAACGAGGAATGCCTCGCCGT
CGAGAGTTCGTAATGCAG
INTRON 9 - 10 16369887 16374673 4787
GTATTCTTAATCTTCGTACTAAATG..........TCATGAATTTCTTTAACCTCAATAG
10 EXON 10 16369755 16369886 - - 132
GTCAAGGTAGGCAATGAAGTTGCGACTGGAACAGGACCCAATAAAAAGATAGCCAAAAAA
AATGCTGCTGAAGCAATGCTGTTACAGCTTGGCTATAAAGCGTCCACCAGTCTTCAGGAT
CCGCTCGACAAG
INTRON 10 - 11 16366140 16369754 3615
GTAAGTGTGGGCCTTAGTGGACATG..........TGTAATAATTGATTTAACCTTTCAG
11 EXON 11 16366079 16366139 - - 61
ACAGGTGAAAACAAAGGATGGAGTGGTCCAAAGCCTGGGTTTCCTGAACCAACAAATAAC
A
INTRON 11 - 12 16346012 16366078 20067
GTAAGTTACTATTTTGTGTGTGTGT..........CAGTGTACCTTTATTTTATTCATAG
12 EXON 12 16344299 16346011 - - 1713
CTCCAAAAGGAATTCTTCATCTTTCTCCTGATGTTTATCAAGAGATGGAAGCTAGCCGCC
ACAGAGTGACCTCTGGCACAACTCTAAGCTACTTATCTCCCAAAGATATGAACCAACCTT
CAAGCTCTTTCTTCAGTGTGTCTCCCTCATCAACTAGTTCAGCCACAGTTGCCAGGGAAC
TCCTTATGAATGGAACATCTCCTACTGCTGAAGCCATAGGTTTAAAAGGAAGTTCTCCTA
CTTCCCCTTGTTCTTCAGTACAGCCTTCAAAACAACTGGAATATTTAGCAAGGATTCAAG
GCTTTCAGGTATGATTTTAAAGAAAAAAACAAAAAGAGAAAATAAAACTCATTAGCCCCA
AATCCTTCATTTCTGTCCACCAGAAGGCTCATTCTTGCCTGCTAATGTGGCCTCCATGCC
ATTAACATTGTAAGTTATTTAGAAACACAAAAGACAGAAAAAAAGAGATTCATAGCACAT
GTCTTATTTTCTGTCACTACTGTCCAGGAACTCTGTTGCTGCCTGGCTTTCTGCCATATT
GATATTCACATCTGTACTCTCTGTCTCTCTCTTTCTCCCTCCCTCTCCCTCTCTTTCTTC
CCCTCCCTCTTCCTTTCCAATCCTGTCTACCTTCCTTTCTTCCCCTCCCTTCTCCCTCAT
GTCTCCATCCTTGCCTTCCTCCTGGGTCCTGTCTTTCAGTTGGTCTTGATTGGCACATCC
ATCTTCTCATTTTGTTTTGCACAACCAAGATTCTCCCAGGAGACATTTGGTGTTAGTGTT
TACATCACTTCCCCTTTTTACAGTCACGGTTGAGTCTTTCTGCTGTTGATTTGATTTTAT
AGCAGTTTTGAATTTCCCATCCTGCAGTTAGTAATGACACAGGTACATTTATAAGGTCCA
GCACCCTTGAAGTCTGTTACCTTAGGGGGCATTAAACATGGCACTGAGCAGTAGTGGAAC
ACTTTGTGGATGTTGGAGGTATAATGAGTATCTGTTGTACTGGATCGTGTGCTGGGCCAG
GGTGGAGAAGCATCTACCGCCACTGATACAGCAGCTGTCTCATGATGATCTCAGAGCAGC
ACACAGCTGTCATGAGTGTAGATTTGGGAATGGAGCTTCTTTCCCACTTATTCTTGTTCC
CTTTGGGGGGAAATACCCCATGAAACCAACAGGAGAGATTTTAAAGGAATTGTTAATTGT
GGGAAGGGAAGTTTATGTGTGCCGACTCCTAGTTGCCTTGAAAGCCAAGTACTGAAGCAT
AACTGTCAACCGACGGGATGAAACTGCAGCTTGCGTGTGCACAGGACACTCTGGCTCCCC
ACATTTCACTGCTTCACCTTCCATCTTAGTCTTCCTTCTTAAGACCAAACTCTGTAATTT
CTTGTAGAAATGTTCTAGATCTGTATTATGTAGAAGATATCATGTATTATAAATGTTTCA
TGGCATCAGTTATACAATGAGAAAGAAGATGATGTGTTGGGAGTATTTTGCATGTTTGGT
TTGGTTTTTCTACTTCACAGATCCCTTCTGATTCTTTCAATTCTATTGCCAGGTAGTCGC
TAGTGTTTCTAATCACACGATTGATTTAATTAATACGATGCTGAAGAAGCTGTACTAATT
ATTGACTCTGTCATCGGAAATTTAAATGATTAATTTCAAGTTATAATTTCAGAATTTGTT
ATTTACCTTAAGAATTACAATAAATCACTGTTT
3' upstream sequence
AAACAAAAGACTTTGATTCATATAGTGAAAGCACTAGACTAATACTTAGTTCTACCAATA
ATCTGCATAGTATAAATTAAAATAAACTGTGATGAAAAGTGACCCACTGCTCATTTATAA
ATGTCTGCAAGTGATGGCTCGGCTCTGTGCACGCAGTACATGTTGCACTCTGGCTTTTGG
CTGAGTTTTGAAGTTTCTGAGTTCCTTATGCATTAGTCCTCGGCCATGACAGCAGCTATA
ATCTTATCCTATCTTCACTTTAACCGAATTAGAGTCTACTACCCCTATTGCTGGGCTCGC
TGCTTACACCTATCTCAAAAGCTTGCTCTGTGGTAATATTCTCTTCCTCATGGACAAGGT
AAACATCTCCAGATCTGTGACAGTGGTGGTTACACATTGCTGTGCTGTGTCACTGGAGTG
AGCGGGTGCTGCTCGTGGACCACAGCCTGCAGCCGCAAGGCAGTCTCTGGAGAGTGGCCT
CTGGTCTGCGATGAGTGCACACATCATCATGTCACCCTAGATGGTTCTTGTGATAAGAGT
TTTAAAGTGTATTTCTTTCTTGGTAATTTTCTCAGGTAGGAAAATATACGGATTTTTTTT
TTGTTTGTTTCTTACATGATTTAATTAGACTGTAGCTAGAAAGTGGAAGACCAGCTTGTT
AGAAATTATATGCTCTTCTGTTACTTTTATTTCTGGAATTTGAAAACAATAAATTCATTT
TCTTTGTAGGTCAGTAGCTTTTCATCTCATTCCACATTGAACAGTTGTCATTCCTACTGA
ATGTGTAGGCTCTGCTTAGGCCTTCCATTGCCCACTGTGGTATGATTTAAGCCTAACTAA
GCTACTGCGCTCTCTTGTAGTGCCAAATTAAGTCAGATGAGTCTGTGGAAAAAGAAGTTG
CTGTAACTTAATTTTATTTTCATTTCCCAGTCTTTAATTGAAATTTACAAATGACAAAAA
GGTAATTTGCTCAGGCACATGTAGGTATTAAGTTCACTTT..........

Sequence Detail Report

Gene Symbol (Gene ID) Stau2 (ENSMUSG00000025920)
Transcript ID ENSMUST00000127420
SNP Information
Strain :
Sequence Retrieve :
Exon translate :
CDS Start ( 1 ) - End ( 113 )
-
Strand : forward reverse
Show sequence : nucleotide amino acid
Color information